Title: Robust Ordinal Regression MCDA library
Diff between ror versions 0.6 dated 2011-12-30 and 0.6.1 dated 2011-12-31
Description: An R package for computing both exact- and stochastic robust ordinal regression.
Author: Tommi Tervonen
Maintainer: Tommi Tervonen
ror-0.6.1/ror/DESCRIPTION | 9 ++++-----
ror-0.6.1/ror/MD5 | 4 ++--
ror-0.6.1/ror/inst/java/libror-0.4.1-jar-with-dependencies.jar |only
ror-0.6/ror/inst/java/libror-0.4-jar-with-dependencies.jar |only
4 files changed, 6 insertions(+), 7 deletions(-)
Title: Parametric bootstrap and Kenward Roger based methods for mixed
model comparison
Diff between pbkrtest versions 0.1.3 dated 2011-12-06 and 0.2.0 dated 2011-12-31
Description: Test in linear mixed effects models based on parametric bootstrap approaches and Kenward-Roger modification of F-tests
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
pbkrtest-0.1.3/pbkrtest/INDEX |only
pbkrtest-0.2.0/pbkrtest/ChangeLog | 17 ++
pbkrtest-0.2.0/pbkrtest/DESCRIPTION | 6
pbkrtest-0.2.0/pbkrtest/MD5 | 11 -
pbkrtest-0.2.0/pbkrtest/R/KenRog-General.R | 69 +++++---
pbkrtest-0.2.0/pbkrtest/R/KenRog-linearAlgebra.R | 10 +
pbkrtest-0.2.0/pbkrtest/R/PB_ParmBoot.R | 192 +++++++++++++----------
7 files changed, 194 insertions(+), 111 deletions(-)
Title: Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics".
Diff between languageR versions 1.3 dated 2011-12-21 and 1.4 dated 2011-12-31
Description: Data sets exemplifying statistical methods, and some
facilitatory utility functions used in "Analyzing Linguistic
Data: A practical introduction to statistics using R",
Cambridge University Press, 2008.
Author: R. H. Baayen
Maintainer:
DESCRIPTION | 12 +-
MD5 | 24 +++--
NAMESPACE | 6 -
R/aovlmer.fnc.R | 38 ---------
R/pvals.fnc.R | 135 --------------------------------
R/simulateLatinsquare.fnc.R | 166 +---------------------------------------
R/simulateQuasif.fnc.R | 91 +--------------------
data/aovlmerfnc.rda |only
data/datalist | 4
data/pvalsfnc.rda |only
data/simulateLatinsquarefnc.rda |only
data/simulateQuasiffnc.rda |only
man/aovlmer.fnc.Rd | 23 ++---
man/pvals.fnc.Rd | 5 -
man/simulateQuasif.fnc.Rd | 5 -
15 files changed, 62 insertions(+), 447 deletions(-)
Title: GeneticStudio packages for R.
Diff between gstudio versions 0.3 dated 2011-11-25 and 0.5 dated 2011-12-31
Description: This package was created to support population
genetics and landscape genetic courses I teach at
Virginia Commonwealth University. This package
contains classes and functions for the analysis of
marker data to include structure statistics, analyses
based upon allele frequencies, and the Population
Graphs network analysis of spatial conditional genetic
covariance.
Author: Rodney J. Dyer
Maintainer: Rodney J. Dyer
gstudio-0.3/gstudio/inst/doc |only
gstudio-0.5/gstudio/ChangeLog | 71 ++++----
gstudio-0.5/gstudio/DESCRIPTION | 8
gstudio-0.5/gstudio/MD5 | 127 +++++++--------
gstudio-0.5/gstudio/R/Locus-class.R | 7
gstudio-0.5/gstudio/R/minus.mom.R | 21 +-
gstudio-0.5/gstudio/inst/docs |only
gstudio-0.5/gstudio/man/Locus-accessors.Rd | 4
gstudio-0.5/gstudio/man/Population-accessors.Rd | 12 -
gstudio-0.5/gstudio/man/allele.frequencies_Population.Rd | 2
gstudio-0.5/gstudio/man/araptus_attenuatus.Rd | 1
gstudio-0.5/gstudio/man/as.character.Rd | 2
gstudio-0.5/gstudio/man/as.vector.Rd | 2
gstudio-0.5/gstudio/man/column.class_Population.Rd | 4
gstudio-0.5/gstudio/man/column.names_Population.Rd | 2
gstudio-0.5/gstudio/man/congruence.graph.Rd | 6
gstudio-0.5/gstudio/man/congruence.probability.Rd | 4
gstudio-0.5/gstudio/man/cornus_florida.Rd | 1
gstudio-0.5/gstudio/man/dim.Rd | 2
gstudio-0.5/gstudio/man/genetic.distance.Rd | 3
gstudio-0.5/gstudio/man/genetic.diversity.Rd | 5
gstudio-0.5/gstudio/man/genetic.structure.Rd | 8
gstudio-0.5/gstudio/man/genotype.counts_Population.Rd | 2
gstudio-0.5/gstudio/man/get.frequencies_Frequencies.Rd | 2
gstudio-0.5/gstudio/man/he_Frequencies.Rd | 2
gstudio-0.5/gstudio/man/ho_Frequencies.Rd | 2
gstudio-0.5/gstudio/man/indices_Population.Rd | 2
gstudio-0.5/gstudio/man/is.heterozygote_Locus.Rd | 2
gstudio-0.5/gstudio/man/is.na.Rd | 2
gstudio-0.5/gstudio/man/length.Rd | 2
gstudio-0.5/gstudio/man/minus.mom.Rd | 8
gstudio-0.5/gstudio/man/multivariate.loci_Population.Rd | 2
gstudio-0.5/gstudio/man/names.Rd | 2
gstudio-0.5/gstudio/man/offspring.array.Rd | 4
gstudio-0.5/gstudio/man/partition_Population.Rd | 2
gstudio-0.5/gstudio/man/paternity.Rd | 6
gstudio-0.5/gstudio/man/paternity.spiderplot.Rd | 4
gstudio-0.5/gstudio/man/pies.on.map.Rd | 4
gstudio-0.5/gstudio/man/population.graph.Rd | 6
gstudio-0.5/gstudio/man/print.Rd | 2
gstudio-0.5/gstudio/man/print_summary.gstudio.Rd | 2
gstudio-0.5/gstudio/man/read.population.Rd | 3
gstudio-0.5/gstudio/man/row.names.Rd | 2
gstudio-0.5/gstudio/man/show.Rd | 2
gstudio-0.5/gstudio/man/stratum.distance.Rd | 6
gstudio-0.5/gstudio/man/summary.Rd | 2
gstudio-0.5/gstudio/man/validate_gstudio_tests.Rd | 3
47 files changed, 192 insertions(+), 176 deletions(-)
Title: Mixed Effects Cox Models.
Diff between coxme versions 2.1-3 dated 2011-06-20 and 2.2-1 dated 2011-12-31
Description: Cox proportional hazards models containing Gaussian random
effects, also known as frailty models.
Author: Terry Therneau
Maintainer: Terry Therneau
coxme-2.1-3/coxme/COPYING |only
coxme-2.1-3/coxme/R/coxvarFull.R |only
coxme-2.1-3/coxme/R/coxvarMlist.R |only
coxme-2.1-3/coxme/man/ranef.coxme.Rd |only
coxme-2.2-1/coxme/DESCRIPTION | 16
coxme-2.2-1/coxme/MD5 |only
coxme-2.2-1/coxme/NAMESPACE | 14
coxme-2.2-1/coxme/R/coxme.R | 25
coxme-2.2-1/coxme/R/coxme.control.R | 6
coxme-2.2-1/coxme/R/coxme.fit.R | 150 ++--
coxme-2.2-1/coxme/R/coxmeFull.R | 6
coxme-2.2-1/coxme/R/coxmeMlist.R | 6
coxme-2.2-1/coxme/R/lmekin.R |only
coxme-2.2-1/coxme/R/lmekin.control.R |only
coxme-2.2-1/coxme/R/print.coxme.R | 25
coxme-2.2-1/coxme/R/print.lmekin.R |only
coxme-2.2-1/coxme/R/ranef.R | 20
coxme-2.2-1/coxme/inst/NEWS.Rd | 32
coxme-2.2-1/coxme/inst/doc/coxme.Rnw |only
coxme-2.2-1/coxme/inst/doc/coxme.pdf |only
coxme-2.2-1/coxme/inst/doc/laplace.Rnw |only
coxme-2.2-1/coxme/inst/doc/laplace.pdf |only
coxme-2.2-1/coxme/inst/doc/lmekin.Rnw |only
coxme-2.2-1/coxme/inst/doc/lmekin.pdf |only
coxme-2.2-1/coxme/inst/doc/variance.Rnw | 22
coxme-2.2-1/coxme/inst/doc/variance.pdf |binary
coxme-2.2-1/coxme/man/coxme.control.Rd | 12
coxme-2.2-1/coxme/man/fixef.coxme.Rd | 29
coxme-2.2-1/coxme/man/fixef.lmekin.Rd |only
coxme-2.2-1/coxme/man/lmekin.Rd |only
coxme-2.2-1/coxme/man/lmekin.object.Rd |only
coxme-2.2-1/coxme/man/print.lmekin.Rd |only
coxme-2.2-1/coxme/noweb/Makefile | 3
coxme-2.2-1/coxme/noweb/all.nw | 1003 +++++++++++++++++++++++++++---
coxme-2.2-1/coxme/noweb/bdsmatrix.Rnw |only
coxme-2.2-1/coxme/noweb/build.Rnw | 57 +
coxme-2.2-1/coxme/noweb/fit.Rnw | 168 +++--
coxme-2.2-1/coxme/noweb/lmekin.Rnw |only
coxme-2.2-1/coxme/noweb/main.Rnw | 1
coxme-2.2-1/coxme/noweb/ranef.Rnw | 24
coxme-2.2-1/coxme/noweb/varfun.Rnw | 10
coxme-2.2-1/coxme/noweb/varfun2.Rnw | 6
coxme-2.2-1/coxme/src/coxfit6c.c | 6
coxme-2.2-1/coxme/tests/bdstest.R |only
coxme-2.2-1/coxme/tests/bdstest.Rout.save |only
coxme-2.2-1/coxme/tests/lmekin1.R |only
coxme-2.2-1/coxme/tests/lmekin1.Rout.save |only
coxme-2.2-1/coxme/tests/nest1.R | 2
coxme-2.2-1/coxme/tests/nest1.Rout.save | 26
coxme-2.2-1/coxme/tests/nest2.Rout.save | 24
coxme-2.2-1/coxme/tests/refine.R | 36 -
coxme-2.2-1/coxme/tests/refine.Rout.save | 57 +
coxme-2.2-1/coxme/tests/refine1.R |only
coxme-2.2-1/coxme/tests/refine1.Rout.save |only
coxme-2.2-1/coxme/tests/refine2.R | 58 +
coxme-2.2-1/coxme/tests/refine2.Rout.save | 87 +-
coxme-2.2-1/coxme/tests/refine3.R | 8
coxme-2.2-1/coxme/tests/refine3.Rout.save | 28
coxme-2.2-1/coxme/tests/shrink.R | 5
coxme-2.2-1/coxme/tests/shrink.Rout.save | 30
coxme-2.2-1/coxme/tests/slope1.R | 26
coxme-2.2-1/coxme/tests/slope1.Rout.save | 240 +++----
coxme-2.2-1/coxme/tests/slope2.R | 9
coxme-2.2-1/coxme/tests/slope2.Rout.save | 29
coxme-2.2-1/coxme/tests/slope3.R | 4
coxme-2.2-1/coxme/tests/slope3.Rout.save | 24
coxme-2.2-1/coxme/tests/slope4.R | 12
coxme-2.2-1/coxme/tests/slope4.Rout.save | 32
coxme-2.2-1/coxme/tests/strata1.Rout.save | 24
coxme-2.2-1/coxme/tests/test0.Rout.save | 24
coxme-2.2-1/coxme/tests/test1.R | 20
coxme-2.2-1/coxme/tests/test1.Rout.save | 40 -
coxme-2.2-1/coxme/tests/test2.R | 10
coxme-2.2-1/coxme/tests/test2.Rout.save | 30
coxme-2.2-1/coxme/tests/test3.R | 2
coxme-2.2-1/coxme/tests/test3.Rout.save | 22
coxme-2.2-1/coxme/tests/test4.R | 12
coxme-2.2-1/coxme/tests/test4.Rout.save | 36 -
coxme-2.2-1/coxme/tests/twoterm.R | 8
coxme-2.2-1/coxme/tests/twoterm.Rout.save | 28
coxme-2.2-1/coxme/vignettes |only
81 files changed, 2004 insertions(+), 630 deletions(-)
Title: doBy - Groupwise summary statistics, general linear contrasts,
LSMEANS (least-squares-means), and other utilities
Diff between doBy versions 4.4.3 dated 2011-11-11 and 4.4.4 dated 2011-12-31
Description: doBy contains a variety of utilities including: 1) Facilities for groupwise computations of
summary statistics and other facilities for working with grouped data. 2) General linear
contrasts and LSMEANS (least-squares-means also known as population means), 3) Rscript2HTML for
autmatic generation of HTML file from R-script with a minimum of markup, 4) implementation of
the Kenward-Roger method for estimating denominator degrees of freedom various for tests in
linear mixed models, 5) methods for determining p-values based on parametric bootstrap in
linear mixed models 6) other utilities. doBy originally contained facilities for 'doing
something to data where data would be partitioned by some variables which define groupings of
data' - hence the name doBy.
Author: S
Maintainer: S
ChangeLog | 6 +++
DESCRIPTION | 21 +++---------
MD5 | 70 +++++++++++++++++++++---------------------
data/beets.txt.gz |binary
data/budworm.txt.gz |binary
data/codstom.rda |binary
data/dietox.rda |binary
data/milkman.RData |binary
inst/doc/doBy.pdf |binary
inst/doc/figures/doBy-042.pdf |binary
inst/doc/figures/doBy-043.pdf |binary
inst/doc/figures/doBy-044.pdf |binary
inst/doc/figures/doBy-046.pdf |binary
inst/doc/figures/doBy-048.pdf |binary
inst/doc/figures/doBy-052.pdf |binary
inst/doc/figures/doBy-053.pdf |binary
inst/doc/popMeans.pdf |binary
man/Rscript2HTML.Rd | 2 -
man/doBy.Rd | 2 -
man/esticon.Rd | 2 -
man/firstlastobs.Rd | 2 -
man/lapplyBy.Rd | 2 -
man/lmBy.Rd | 2 -
man/lsmeans.Rd | 2 -
man/orderBy.Rd | 2 -
man/recodeVar.Rd | 2 -
man/renameCol.Rd | 2 -
man/sampleBy.Rd | 2 -
man/scaleBy.Rd | 2 -
man/splitBy.Rd | 2 -
man/subSeq.Rd | 2 -
man/subsetBy.Rd | 2 -
man/summaryBy.Rd | 2 -
man/timeSinceEvent.Rd | 2 -
man/transformBy.Rd | 2 -
man/which.maxn.Rd | 2 -
36 files changed, 66 insertions(+), 69 deletions(-)
Title: One-Dimensional Cellular Automata
Diff between CellularAutomaton versions 1.0 dated 2007-11-26 and 1.1 dated 2011-12-31
More information about CellularAutomaton at CRAN
Description: This package is an object-oriented implementation of one-dimensional cellular automata. It supports many of the features offered by Mathematica, including elementary rules, user-defined rules, radii, user-defined seeding, and plotting.
Author: John Hughes
Maintainer: John Hughes
DESCRIPTION | 24 +++++++++++++-----------
MD5 |only
man/CellularAutomaton-package.Rd | 6 +++---
man/CellularAutomaton.Rd | 8 ++++----
man/getLattice.CellularAutomaton.Rd | 2 +-
man/getLattice.Rd | 2 +-
man/getNumberOfColors.CellularAutomaton.Rd | 2 +-
man/getNumberOfColors.Rd | 2 +-
man/getRadius.CellularAutomaton.Rd | 2 +-
man/getRadius.Rd | 2 +-
man/getRuleNumber.CellularAutomaton.Rd | 2 +-
man/getRuleNumber.Rd | 2 +-
man/getSteps.CellularAutomaton.Rd | 2 +-
man/getSteps.Rd | 2 +-
man/getTotalistic.CellularAutomaton.Rd | 2 +-
man/getTotalistic.Rd | 2 +-
man/plot.CellularAutomaton.Rd | 2 +-
man/plot.Rd | 2 +-
18 files changed, 34 insertions(+), 32 deletions(-)
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