Title: Analysis of Mark-Recapture data
Diff between mra versions 2.9 dated 2012-01-03 and 2.10 dated 2012-01-05
Description: Analysis of mark-recapture data using covariates. Models: CJS open population; Huggin's closed population. Link functions: logit, sine, hazard. Model selection and model averaging routines. Plot methods. Simulation routine. CJS methods produce estimates of population size using the Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/zzz.R | 2 +-
src/Mrawin.f90 | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Event History Analysis
Diff between eha versions 2.0-6 dated 2011-12-10 and 2.0-7 dated 2012-01-05
Description: Event history analysis: Sampling of risk sets in Cox regression,
selections in the Lexis diagram, bootstrapping. Parametric
proportional hazards fitting with left truncation and right
censoring for common families of distributions, piecewise
constant hazards, and discrete models. AFT regression for
left truncated and right censored data. Binary and Poisson
regression for clustered data, fixed and random effects with
bootstrapping.
Author: Göran Broström
Maintainer: Göran Broström
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
R/check.dist.R | 11 ++++++++---
inst/doc/glmmML.pdf |binary
inst/doc/parametric.pdf |binary
man/check.dist.Rd | 6 ++++--
src/aftexpreg.c | 18 +++++++++---------
src/aftreg.c | 4 ++--
src/aftregGomp.c | 4 ++--
src/eha_fun.c | 8 ++++----
src/expreg.c | 2 +-
src/fun.c | 20 ++++++++++----------
src/glmmb0.c | 4 ++--
src/glmmml.c | 4 ++--
15 files changed, 68 insertions(+), 56 deletions(-)
Title: Distributed Lag Non-linear Models
Diff between dlnm versions 1.4.1 dated 2011-07-21 and 1.5.2 dated 2012-01-05
Description: The package dlnm contains functions to specify and run distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini
dlnm-1.4.1/dlnm/R/onAttach.R |only
dlnm-1.5.2/dlnm/DESCRIPTION | 13 -
dlnm-1.5.2/dlnm/MD5 |only
dlnm-1.5.2/dlnm/NAMESPACE | 28 +-
dlnm-1.5.2/dlnm/R/coef.crosspred.R |only
dlnm-1.5.2/dlnm/R/coef.crossreduce.R |only
dlnm-1.5.2/dlnm/R/crossbasis.R | 185 +++++++++-----
dlnm-1.5.2/dlnm/R/crossplot.R | 355 +++++++++++++--------------
dlnm-1.5.2/dlnm/R/crosspred.R | 203 +++++++--------
dlnm-1.5.2/dlnm/R/crossreduce.R |only
dlnm-1.5.2/dlnm/R/internal.R |only
dlnm-1.5.2/dlnm/R/lines.crosspred.R | 160 +++++-------
dlnm-1.5.2/dlnm/R/lines.crossreduce.R |only
dlnm-1.5.2/dlnm/R/mkbasis.R | 203 +++++++--------
dlnm-1.5.2/dlnm/R/mklagbasis.R | 28 +-
dlnm-1.5.2/dlnm/R/onebasis.R |only
dlnm-1.5.2/dlnm/R/plot.crosspred.R | 287 ++++++++++------------
dlnm-1.5.2/dlnm/R/plot.crossreduce.R |only
dlnm-1.5.2/dlnm/R/points.crosspred.R | 164 +++++-------
dlnm-1.5.2/dlnm/R/points.crossreduce.R |only
dlnm-1.5.2/dlnm/R/summary.crossbasis.R | 58 ++--
dlnm-1.5.2/dlnm/R/summary.crosspred.R | 22 -
dlnm-1.5.2/dlnm/R/summary.crossreduce.R |only
dlnm-1.5.2/dlnm/R/summary.onebasis.R |only
dlnm-1.5.2/dlnm/R/vcov.crosspred.R |only
dlnm-1.5.2/dlnm/R/vcov.crossreduce.R |only
dlnm-1.5.2/dlnm/inst/CITATION | 4
dlnm-1.5.2/dlnm/inst/ChangeLog | 57 ++++
dlnm-1.5.2/dlnm/inst/Changesince151 |only
dlnm-1.5.2/dlnm/inst/doc/biblioVignette.bib | 10
dlnm-1.5.2/dlnm/inst/doc/dlnmOverview.Rnw | 361 ++++++++++++++++------------
dlnm-1.5.2/dlnm/inst/doc/dlnmOverview.pdf |binary
dlnm-1.5.2/dlnm/man/chicagoNMMAPS.Rd | 2
dlnm-1.5.2/dlnm/man/coef.crosspred.Rd |only
dlnm-1.5.2/dlnm/man/crossbasis.Rd | 102 +++----
dlnm-1.5.2/dlnm/man/crosspred.Rd | 99 +++----
dlnm-1.5.2/dlnm/man/crossreduce.Rd |only
dlnm-1.5.2/dlnm/man/dlnm-internal.Rd | 82 +-----
dlnm-1.5.2/dlnm/man/dlnm-package.Rd | 14 -
dlnm-1.5.2/dlnm/man/onebasis.Rd |only
dlnm-1.5.2/dlnm/man/plot.crosspred.Rd | 74 ++---
dlnm-1.5.2/dlnm/man/plot.crossreduce.Rd |only
42 files changed, 1291 insertions(+), 1220 deletions(-)
Title: Analysis of Quaternary Science Data
Diff between rioja versions 0.7-2 dated 2011-12-25 and 0.7-3 dated 2012-01-05
Description: Functions for the analysis of Quaternary science data, including
constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer
functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins
rioja-0.7-2/rioja/R/First.lib.r |only
rioja-0.7-2/rioja/R/ZZZ.r |only
rioja-0.7-3/rioja/DESCRIPTION | 6 -
rioja-0.7-3/rioja/MD5 | 27 +++---
rioja-0.7-3/rioja/NAMESPACE | 139 +++++++++++++++++++++++++++++++--
rioja-0.7-3/rioja/R/PTF.r | 6 -
rioja-0.7-3/rioja/R/WA.r | 4
rioja-0.7-3/rioja/R/readC2Model.r | 8 +
rioja-0.7-3/rioja/R/utils.r | 10 +-
rioja-0.7-3/rioja/R/zzz.r |only
rioja-0.7-3/rioja/inst/CITATION | 4
rioja-0.7-3/rioja/inst/COPYING | 4
rioja-0.7-3/rioja/inst/ChangeLog | 7 +
rioja-0.7-3/rioja/man/chclust.Rd | 2
rioja-0.7-3/rioja/man/rioja.package.Rd | 7 -
rioja-0.7-3/rioja/src/mlrc.cpp | 7 +
16 files changed, 183 insertions(+), 48 deletions(-)
Title: Truncated Multivariate Normal and Student t Distribution
Diff between tmvtnorm versions 1.4-1 dated 2011-12-27 and 1.4-3 dated 2012-01-05
Description: Random number generation for the truncated multivariate normal and Student t distribution.
Computes probabilities, quantiles and densities,
including one-dimensional and bivariate marginal densities. Computes first and second moments (i.e. mean and covariance matrix) for the double-truncated multinormal case.
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm
DESCRIPTION | 9 +++++----
MD5 | 14 +++++++++-----
NEWS | 5 +++++
Rplots.pdf |only
inst/doc |only
man/ptmvt.Rd | 3 ---
src/linked_list.f90 | 16 ++++++++++++++++
src/rtmvnormgibbs.f90 | 4 +++-
8 files changed, 38 insertions(+), 13 deletions(-)
Title: Map experimental data on custom-made SVG file
Diff between SVGMapping versions 1.41 dated 2012-01-03 and 1.42 dated 2012-01-05
Description: This package allows you to display experimental data on a custom-made SVG image.
Author: Jean-Christophe AUDE, Raphael CHAMPEIMONT
Maintainer: Jean-Christophe AUDE
DESCRIPTION | 10 ++++------
MD5 | 10 +++++-----
R/init.R | 9 +++------
data/yeastAnnotMatrix.rda |binary
data/yeastExprData.rda |binary
inst/doc/SVGMapping-tutorial.pdf |binary
6 files changed, 12 insertions(+), 17 deletions(-)
Title: ODBC Database Access
Diff between RODBC versions 1.3-3 dated 2011-07-26 and 1.3-4 dated 2012-01-05
Description: An ODBC database interface
Author: Brian Ripley, and from 1999 to Oct 2002 Michael Lapsley
Maintainer: Brian Ripley
ChangeLog | 4 ++++
DESCRIPTION | 10 +++++-----
MD5 |only
R/RODBC.R | 7 +------
R/TypeInfo.R | 50 ++++++++++++++++++++++++++------------------------
src/RODBC.c | 15 +++++++++------
6 files changed, 45 insertions(+), 41 deletions(-)
Title: multivariate polynomials
Diff between multipol versions 1.0-4 dated 2009-10-15 and 1.0-5 dated 2012-01-05
Description: Various utilities to manipulate multivariate polynomials
Author: Robin K. S. Hankin
Maintainer:
multipol-1.0-4/multipol/inst/doc/multipol.bib |only
multipol-1.0-5/multipol/DESCRIPTION | 7 +++---
multipol-1.0-5/multipol/MD5 |only
multipol-1.0-5/multipol/inst/doc/multipol.Rnw | 27 ++++++++++----------------
multipol-1.0-5/multipol/inst/doc/multipol.pdf |binary
multipol-1.0-5/multipol/man/Extract.Rd | 2 -
multipol-1.0-5/multipol/man/Ops.multipol.Rd | 2 -
multipol-1.0-5/multipol/man/as.function.Rd | 4 +--
multipol-1.0-5/multipol/man/is.constant.Rd | 2 -
multipol-1.0-5/multipol/man/trim.Rd | 2 -
multipol-1.0-5/multipol/vignettes |only
11 files changed, 21 insertions(+), 25 deletions(-)