CRANberries

CRANberries aggregates information about new, updated and removed packages from the
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Created and provided by Dirk Eddelbuettel.

Thu, 05 Jan 2012

Package mra updated to version 2.10 with previous version 2.9 dated 2012-01-03

Title: Analysis of Mark-Recapture data
Description: Analysis of mark-recapture data using covariates. Models: CJS open population; Huggin's closed population. Link functions: logit, sine, hazard. Model selection and model averaging routines. Plot methods. Simulation routine. CJS methods produce estimates of population size using the Horvitz-Thompson estimator.
Author: Trent McDonald
Maintainer: Trent McDonald

Diff between mra versions 2.9 dated 2012-01-03 and 2.10 dated 2012-01-05 

 DESCRIPTION    |    8 ++++----
 MD5            |    6 +++---
 R/zzz.R        |    2 +-
 src/Mrawin.f90 |    2 +-
 4 files changed, 9 insertions(+), 9 deletions(-)

More information about mra at CRAN
Path: /cran/updated | permanent link

Package eha updated to version 2.0-7 with previous version 2.0-6 dated 2011-12-10

Title: Event History Analysis
Description: Event history analysis: Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. AFT regression for left truncated and right censored data. Binary and Poisson regression for clustered data, fixed and random effects with bootstrapping.
Author: Göran Broström
Maintainer: Göran Broström

Diff between eha versions 2.0-6 dated 2011-12-10 and 2.0-7 dated 2012-01-05 

 ChangeLog               |    7 ++++++-
 DESCRIPTION             |    8 ++++----
 MD5                     |   28 ++++++++++++++--------------
 R/check.dist.R          |   11 ++++++++---
 inst/doc/glmmML.pdf     |binary
 inst/doc/parametric.pdf |binary
 man/check.dist.Rd       |    6 ++++--
 src/aftexpreg.c         |   18 +++++++++---------
 src/aftreg.c            |    4 ++--
 src/aftregGomp.c        |    4 ++--
 src/eha_fun.c           |    8 ++++----
 src/expreg.c            |    2 +-
 src/fun.c               |   20 ++++++++++----------
 src/glmmb0.c            |    4 ++--
 src/glmmml.c            |    4 ++--
 15 files changed, 68 insertions(+), 56 deletions(-)

More information about eha at CRAN
Path: /cran/updated | permanent link

Package dlnm updated to version 1.5.2 with previous version 1.4.1 dated 2011-07-21

Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify and run distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini

Diff between dlnm versions 1.4.1 dated 2011-07-21 and 1.5.2 dated 2012-01-05 

 dlnm-1.4.1/dlnm/R/onAttach.R                |only
 dlnm-1.5.2/dlnm/DESCRIPTION                 |   13 -
 dlnm-1.5.2/dlnm/MD5                         |only
 dlnm-1.5.2/dlnm/NAMESPACE                   |   28 +-
 dlnm-1.5.2/dlnm/R/coef.crosspred.R          |only
 dlnm-1.5.2/dlnm/R/coef.crossreduce.R        |only
 dlnm-1.5.2/dlnm/R/crossbasis.R              |  185 +++++++++-----
 dlnm-1.5.2/dlnm/R/crossplot.R               |  355 +++++++++++++--------------
 dlnm-1.5.2/dlnm/R/crosspred.R               |  203 +++++++--------
 dlnm-1.5.2/dlnm/R/crossreduce.R             |only
 dlnm-1.5.2/dlnm/R/internal.R                |only
 dlnm-1.5.2/dlnm/R/lines.crosspred.R         |  160 +++++-------
 dlnm-1.5.2/dlnm/R/lines.crossreduce.R       |only
 dlnm-1.5.2/dlnm/R/mkbasis.R                 |  203 +++++++--------
 dlnm-1.5.2/dlnm/R/mklagbasis.R              |   28 +-
 dlnm-1.5.2/dlnm/R/onebasis.R                |only
 dlnm-1.5.2/dlnm/R/plot.crosspred.R          |  287 ++++++++++------------
 dlnm-1.5.2/dlnm/R/plot.crossreduce.R        |only
 dlnm-1.5.2/dlnm/R/points.crosspred.R        |  164 +++++-------
 dlnm-1.5.2/dlnm/R/points.crossreduce.R      |only
 dlnm-1.5.2/dlnm/R/summary.crossbasis.R      |   58 ++--
 dlnm-1.5.2/dlnm/R/summary.crosspred.R       |   22 -
 dlnm-1.5.2/dlnm/R/summary.crossreduce.R     |only
 dlnm-1.5.2/dlnm/R/summary.onebasis.R        |only
 dlnm-1.5.2/dlnm/R/vcov.crosspred.R          |only
 dlnm-1.5.2/dlnm/R/vcov.crossreduce.R        |only
 dlnm-1.5.2/dlnm/inst/CITATION               |    4 
 dlnm-1.5.2/dlnm/inst/ChangeLog              |   57 ++++
 dlnm-1.5.2/dlnm/inst/Changesince151         |only
 dlnm-1.5.2/dlnm/inst/doc/biblioVignette.bib |   10 
 dlnm-1.5.2/dlnm/inst/doc/dlnmOverview.Rnw   |  361 ++++++++++++++++------------
 dlnm-1.5.2/dlnm/inst/doc/dlnmOverview.pdf   |binary
 dlnm-1.5.2/dlnm/man/chicagoNMMAPS.Rd        |    2 
 dlnm-1.5.2/dlnm/man/coef.crosspred.Rd       |only
 dlnm-1.5.2/dlnm/man/crossbasis.Rd           |  102 +++----
 dlnm-1.5.2/dlnm/man/crosspred.Rd            |   99 +++----
 dlnm-1.5.2/dlnm/man/crossreduce.Rd          |only
 dlnm-1.5.2/dlnm/man/dlnm-internal.Rd        |   82 +-----
 dlnm-1.5.2/dlnm/man/dlnm-package.Rd         |   14 -
 dlnm-1.5.2/dlnm/man/onebasis.Rd             |only
 dlnm-1.5.2/dlnm/man/plot.crosspred.Rd       |   74 ++---
 dlnm-1.5.2/dlnm/man/plot.crossreduce.Rd     |only
 42 files changed, 1291 insertions(+), 1220 deletions(-)

More information about dlnm at CRAN
Path: /cran/updated | permanent link

Package rioja updated to version 0.7-3 with previous version 0.7-2 dated 2011-12-25

Title: Analysis of Quaternary Science Data
Description: Functions for the analysis of Quaternary science data, including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins

Diff between rioja versions 0.7-2 dated 2011-12-25 and 0.7-3 dated 2012-01-05 

 rioja-0.7-2/rioja/R/First.lib.r        |only
 rioja-0.7-2/rioja/R/ZZZ.r              |only
 rioja-0.7-3/rioja/DESCRIPTION          |    6 -
 rioja-0.7-3/rioja/MD5                  |   27 +++---
 rioja-0.7-3/rioja/NAMESPACE            |  139 +++++++++++++++++++++++++++++++--
 rioja-0.7-3/rioja/R/PTF.r              |    6 -
 rioja-0.7-3/rioja/R/WA.r               |    4 
 rioja-0.7-3/rioja/R/readC2Model.r      |    8 +
 rioja-0.7-3/rioja/R/utils.r            |   10 +-
 rioja-0.7-3/rioja/R/zzz.r              |only
 rioja-0.7-3/rioja/inst/CITATION        |    4 
 rioja-0.7-3/rioja/inst/COPYING         |    4 
 rioja-0.7-3/rioja/inst/ChangeLog       |    7 +
 rioja-0.7-3/rioja/man/chclust.Rd       |    2 
 rioja-0.7-3/rioja/man/rioja.package.Rd |    7 -
 rioja-0.7-3/rioja/src/mlrc.cpp         |    7 +
 16 files changed, 183 insertions(+), 48 deletions(-)

More information about rioja at CRAN
Path: /cran/updated | permanent link

New package BBmisc with initial version 1.0-58
Package: BBmisc
Title: Miscellaneous helper functions for B. Bischl.
Description: Miscellaneous helper functions for and from B. Bischl and some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl , Michel Lang , Olaf Mersmann
Maintainer: Bernd Bischl
License: BSD
Depends: stringr
LazyData: yes
ByteCompile: yes
Version: 1.0-58
Collate: 'catf.R' 'checkArg.R' 'checkListElementClass.R' 'coalesce.R' 'collapse.R' 'convertInteger.R' 'directory.R' 'extractSubList.R' 'factor.R' 'insert.R' 'is_error.R' 'isProperlyNamed.R' 'listToShortString.R' 'makeProgressBar.R' 'messagef.R' 'namedList.R' 'printToChar.R' 'requirePackages.R' 'save2.R' 'splitTime.R' 'stopf.R' 'suppressAll.R' 'warningf.R'
Packaged: 2012-01-05 13:52:18 UTC; bischl
Repository: CRAN
Date/Publication: 2012-01-05 14:34:57

More information about BBmisc at CRAN
Path: /cran/new | permanent link

Package tmvtnorm updated to version 1.4-3 with previous version 1.4-1 dated 2011-12-27

Title: Truncated Multivariate Normal and Student t Distribution
Description: Random number generation for the truncated multivariate normal and Student t distribution. Computes probabilities, quantiles and densities, including one-dimensional and bivariate marginal densities. Computes first and second moments (i.e. mean and covariance matrix) for the double-truncated multinormal case.
Author: Stefan Wilhelm with contributions from Manjunath B G
Maintainer: Stefan Wilhelm

Diff between tmvtnorm versions 1.4-1 dated 2011-12-27 and 1.4-3 dated 2012-01-05 

 DESCRIPTION           |    9 +++++----
 MD5                   |   14 +++++++++-----
 NEWS                  |    5 +++++
 Rplots.pdf            |only
 inst/doc              |only
 man/ptmvt.Rd          |    3 ---
 src/linked_list.f90   |   16 ++++++++++++++++
 src/rtmvnormgibbs.f90 |    4 +++-
 8 files changed, 38 insertions(+), 13 deletions(-)

More information about tmvtnorm at CRAN
Path: /cran/updated | permanent link

Package SVGMapping updated to version 1.42 with previous version 1.41 dated 2012-01-03

Title: Map experimental data on custom-made SVG file
Description: This package allows you to display experimental data on a custom-made SVG image.
Author: Jean-Christophe AUDE, Raphael CHAMPEIMONT
Maintainer: Jean-Christophe AUDE

Diff between SVGMapping versions 1.41 dated 2012-01-03 and 1.42 dated 2012-01-05 

 DESCRIPTION                      |   10 ++++------
 MD5                              |   10 +++++-----
 R/init.R                         |    9 +++------
 data/yeastAnnotMatrix.rda        |binary
 data/yeastExprData.rda           |binary
 inst/doc/SVGMapping-tutorial.pdf |binary
 6 files changed, 12 insertions(+), 17 deletions(-)

More information about SVGMapping at CRAN
Path: /cran/updated | permanent link

Package RODBC updated to version 1.3-4 with previous version 1.3-3 dated 2011-07-26

Title: ODBC Database Access
Description: An ODBC database interface
Author: Brian Ripley, and from 1999 to Oct 2002 Michael Lapsley
Maintainer: Brian Ripley

Diff between RODBC versions 1.3-3 dated 2011-07-26 and 1.3-4 dated 2012-01-05 

 ChangeLog    |    4 ++++
 DESCRIPTION  |   10 +++++-----
 MD5          |only
 R/RODBC.R    |    7 +------
 R/TypeInfo.R |   50 ++++++++++++++++++++++++++------------------------
 src/RODBC.c  |   15 +++++++++------
 6 files changed, 45 insertions(+), 41 deletions(-)

More information about RODBC at CRAN
Path: /cran/updated | permanent link

Package multipol updated to version 1.0-5 with previous version 1.0-4 dated 2009-10-15

Title: multivariate polynomials
Description: Various utilities to manipulate multivariate polynomials
Author: Robin K. S. Hankin
Maintainer:

Diff between multipol versions 1.0-4 dated 2009-10-15 and 1.0-5 dated 2012-01-05 

 multipol-1.0-4/multipol/inst/doc/multipol.bib |only
 multipol-1.0-5/multipol/DESCRIPTION           |    7 +++---
 multipol-1.0-5/multipol/MD5                   |only
 multipol-1.0-5/multipol/inst/doc/multipol.Rnw |   27 ++++++++++----------------
 multipol-1.0-5/multipol/inst/doc/multipol.pdf |binary
 multipol-1.0-5/multipol/man/Extract.Rd        |    2 -
 multipol-1.0-5/multipol/man/Ops.multipol.Rd   |    2 -
 multipol-1.0-5/multipol/man/as.function.Rd    |    4 +--
 multipol-1.0-5/multipol/man/is.constant.Rd    |    2 -
 multipol-1.0-5/multipol/man/trim.Rd           |    2 -
 multipol-1.0-5/multipol/vignettes             |only
 11 files changed, 21 insertions(+), 25 deletions(-)

More information about multipol at CRAN
Path: /cran/updated | permanent link

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