Title: R Interface to C API of GLPK
Diff between glpkAPI versions 1.1.5 dated 2011-07-28 and 1.1.7 dated 2012-01-10
Description: R Interface to C API of GLPK, needs GLPK Version >= 4.42
Author: Gabriel Gelius-Dietrich
Maintainer: Gabriel Gelius-Dietrich
DESCRIPTION | 8 +--
INSTALL | 15 +++----
MD5 |only
NEWS | 19 +++++++++
configure | 103 +++++++++++++++++++++++++++++++++----------------
configure.ac | 81 ++++++++++++++++++++++++++++----------
configure.win | 3 -
man/glpkAPI-package.Rd | 4 -
src/Makevars.win | 5 --
9 files changed, 165 insertions(+), 73 deletions(-)
Title: Plots of the Empirical Attainment Function
Diff between eaf versions 1.03 dated 2011-12-04 and 1.04 dated 2012-01-10
Description: Plots of the empirical attainment function for two
objectives.
Author: Carlos Fonseca, Luis Paquete, Thomas Stützle, Manuel
López-Ibáñez and Marco Chiarandini.
Maintainer: Manuel López-Ibáñez
eaf-1.03/eaf/file |only
eaf-1.04/eaf/DESCRIPTION | 14 +++---
eaf-1.04/eaf/MD5 | 31 +++++++-------
eaf-1.04/eaf/NEWS | 3 +
eaf-1.04/eaf/R/eaf.R | 10 ++--
eaf-1.04/eaf/R/zzz.R | 3 -
eaf-1.04/eaf/inst/scripts/eaf/eaf.c | 19 +++++++--
eaf-1.04/eaf/inst/scripts/eaf/eaf_input.c | 2
eaf-1.04/eaf/inst/scripts/eaf/eaf_io.h | 7 ++-
eaf-1.04/eaf/inst/scripts/eaf/eaf_io_priv.h | 15 +++----
eaf-1.04/eaf/inst/scripts/eaf/svn_version | 2
eaf-1.04/eaf/man/eafplot.Rd | 59 ++++++++++++++--------------
eaf-1.04/eaf/src/Makevars | 4 -
eaf-1.04/eaf/src/eaf.c | 19 +++++++--
eaf-1.04/eaf/src/eaf_input.c | 2
eaf-1.04/eaf/src/eaf_io.h | 7 ++-
eaf-1.04/eaf/src/eaf_io_priv.h | 15 +++----
17 files changed, 123 insertions(+), 89 deletions(-)
Title: Word Clouds
Diff between wordcloud versions 1.4 dated 2011-11-02 and 2.0 dated 2012-01-10
Description: Pretty word clouds
Author: Ian Fellows
Maintainer: Ian Fellows
DESCRIPTION | 12 +--
MD5 | 12 ++-
NEWS | 3
R/cloud.R | 181 +++++++++++++++++++++++++++++++++++++++++++++--
data |only
man/SOTU.Rd |only
man/commonality.cloud.Rd |only
man/comparison.cloud.Rd |only
man/wordcloud.Rd | 3
9 files changed, 196 insertions(+), 15 deletions(-)
Title: Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Diff between RSNNS versions 0.4-2 dated 2011-09-30 and 0.4-3 dated 2012-01-10
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks.
This package wraps the SNNS functionality to make it available
from within R. Using the RSNNS low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be
accessed. Furthermore, the package contains a convenient
high-level interface, so that the most common neural network
topologies and learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir and José M. Benítez
Maintainer: Christoph Bergmeir
ChangeLog | 10 +++++++++-
DESCRIPTION | 10 +++++-----
MD5 | 35 +++++++++++++++++++----------------
R/RSNNS-package.R | 9 ++++++++-
R/elman.R | 4 ++--
R/reg_class.R | 35 +++++++++++++----------------------
data/snnsData.RData |binary
demo/00Index | 1 +
demo/eight_elman.R | 4 ++--
demo/mlp_irisSnnsR.R |only
demo/rbf_irisSnnsR.R | 2 +-
inst/CITATION | 28 ++++++++++++++++++++--------
man/RSNNS-package.Rd | 11 +++++++++--
man/decodeClassLabels.Rd | 3 +++
man/elman.Rd | 4 ++--
src/SnnsCLibGenericR_util.c |only
src/SnnsCLibGeneric_util.h |only
src/cc_learn.cpp | 1 +
src/cc_prune.cpp | 27 +++++++++++++++------------
src/kr_pat_scan.cpp | 7 +++++--
20 files changed, 115 insertions(+), 76 deletions(-)
Title: Flexibly reshape data: a reboot of the reshape package.
Diff between reshape2 versions 1.2 dated 2011-11-18 and 1.2.1 dated 2012-01-10
Description: Reshape lets you flexibly restructure and aggregate data
using just two functions: melt and cast.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 10 +++++-----
MD5 | 14 +++++++-------
NEWS | 6 ++++++
R/helper-margins.r | 2 +-
inst/tests/test-margins.r | 10 +++++++---
man/french_fries.Rd | 1 -
man/smiths.Rd | 1 -
man/tips.Rd | 1 -
8 files changed, 26 insertions(+), 19 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.39-4 dated 2011-11-13 and 0.40-1 dated 2012-01-10
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
pomp-0.39-4/pomp/inst/doc/fullnat.bst |only
pomp-0.39-4/pomp/inst/doc/ricker-probe-plot.png |only
pomp-0.40-1/pomp/DESCRIPTION | 34 ++--
pomp-0.40-1/pomp/MD5 | 143 ++++++++--------
pomp-0.40-1/pomp/NAMESPACE | 4
pomp-0.40-1/pomp/R/bsmc.R | 64 ++++---
pomp-0.40-1/pomp/R/parmat.R |only
pomp-0.40-1/pomp/R/plugins.R | 2
pomp-0.40-1/pomp/R/pomp.R | 106 ++++--------
pomp-0.40-1/pomp/R/profile-design.R | 5
pomp-0.40-1/pomp/R/slice-design.R | 5
pomp-0.40-1/pomp/R/sobol.R | 5
pomp-0.40-1/pomp/R/trajectory-pomp.R | 8
pomp-0.40-1/pomp/data/LondonYorke.rda |binary
pomp-0.40-1/pomp/data/blowflies.rda |binary
pomp-0.40-1/pomp/data/dacca.rda |binary
pomp-0.40-1/pomp/data/euler.sir.rda |binary
pomp-0.40-1/pomp/data/gillespie.sir.rda |binary
pomp-0.40-1/pomp/data/gompertz.rda |binary
pomp-0.40-1/pomp/data/ou2.rda |binary
pomp-0.40-1/pomp/data/ricker.rda |binary
pomp-0.40-1/pomp/data/rw2.rda |binary
pomp-0.40-1/pomp/data/verhulst.rda |binary
pomp-0.40-1/pomp/inst/ChangeLog | 128 +++++++++++++++
pomp-0.40-1/pomp/inst/NEWS | 21 ++
pomp-0.40-1/pomp/inst/TODO | 2
pomp-0.40-1/pomp/inst/data-R/blowflies.R | 2
pomp-0.40-1/pomp/inst/data-R/dacca.R | 2
pomp-0.40-1/pomp/inst/data-R/euler.sir.R | 7
pomp-0.40-1/pomp/inst/data-R/gillespie.sir.R | 2
pomp-0.40-1/pomp/inst/data-R/gompertz.R | 2
pomp-0.40-1/pomp/inst/data-R/ou2.R | 2
pomp-0.40-1/pomp/inst/data-R/ricker.R | 2
pomp-0.40-1/pomp/inst/data-R/rw2.R | 2
pomp-0.40-1/pomp/inst/data-R/verhulst.R | 2
pomp-0.40-1/pomp/inst/doc/advanced_topics_in_pomp.Rnw | 37 +++-
pomp-0.40-1/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary
pomp-0.40-1/pomp/inst/doc/gompertz-multi-mif.rda |binary
pomp-0.40-1/pomp/inst/doc/gompertz-trajmatch.rda |binary
pomp-0.40-1/pomp/inst/doc/index.html | 3
pomp-0.40-1/pomp/inst/doc/intro_to_pomp.Rnw | 32 ++-
pomp-0.40-1/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.40-1/pomp/inst/doc/manual.Rnw |only
pomp-0.40-1/pomp/inst/doc/manual.pdf |only
pomp-0.40-1/pomp/inst/doc/nlf-block-boot.rda |binary
pomp-0.40-1/pomp/inst/doc/nlf-boot.rda |binary
pomp-0.40-1/pomp/inst/doc/nlf-fit-from-truth.rda |binary
pomp-0.40-1/pomp/inst/doc/nlf-fits.rda |binary
pomp-0.40-1/pomp/inst/doc/nlf-lag-tests.rda |binary
pomp-0.40-1/pomp/inst/doc/nlf-multi-short.rda |binary
pomp-0.40-1/pomp/inst/doc/ricker-mif.rda |binary
pomp-0.40-1/pomp/inst/doc/ricker-probe-match.rda |binary
pomp-0.40-1/pomp/inst/examples/sir.R | 5
pomp-0.40-1/pomp/inst/examples/sir.c | 5
pomp-0.40-1/pomp/man/bsmc.Rd | 17 +-
pomp-0.40-1/pomp/man/parmat.Rd |only
pomp-0.40-1/pomp/man/pomp-class.Rd | 6
pomp-0.40-1/pomp/man/pomp.Rd | 55 +++---
pomp-0.40-1/pomp/man/profile-design.Rd | 3
pomp-0.40-1/pomp/man/slice-design.Rd | 7
pomp-0.40-1/pomp/man/sobol.Rd | 3
pomp-0.40-1/pomp/man/trajectory-pomp.Rd | 4
pomp-0.40-1/pomp/src/euler.c | 153 ++++++++++++++----
pomp-0.40-1/pomp/src/lpa.c |only
pomp-0.40-1/pomp/src/pomp_internal.h | 4
pomp-0.40-1/pomp/src/rprocess.c | 2
pomp-0.40-1/pomp/src/sir.c | 2
pomp-0.40-1/pomp/src/trajectory.c | 52 ++++--
pomp-0.40-1/pomp/tests/fhn.R | 3
pomp-0.40-1/pomp/tests/fhn.Rout.save | 7
pomp-0.40-1/pomp/tests/ou2-bsmc.R | 5
pomp-0.40-1/pomp/tests/ou2-bsmc.Rout.save | 19 +-
pomp-0.40-1/pomp/tests/ou2-probe.Rout.save | 6
pomp-0.40-1/pomp/tests/ricker-probe.Rout.save | 18 +-
pomp-0.40-1/pomp/tests/sir.R | 2
pomp-0.40-1/pomp/tests/sir.Rout.save | 27 +--
76 files changed, 658 insertions(+), 369 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-9 dated 2011-11-30 and 0.4-10 dated 2012-01-10
Description: An R interface to Weka (Version 3.7.5). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Maintainer: Kurt Hornik
RWeka-0.4-10/RWeka/CHANGELOG | 5 +++++
RWeka-0.4-10/RWeka/DESCRIPTION | 22 +++++++++++-----------
RWeka-0.4-10/RWeka/MD5 | 11 ++++++-----
RWeka-0.4-10/RWeka/inst/doc/RWeka.Rnw | 2 +-
RWeka-0.4-10/RWeka/inst/doc/RWeka.pdf |binary
RWeka-0.4-10/RWeka/vignettes |only
RWeka-0.4-9/RWeka/inst/doc/RWeka.bib |only
7 files changed, 23 insertions(+), 17 deletions(-)
Title: Test of accuracy of formatting numbers.
Diff between numConversion versions 0.1-1 dated 2011-04-07 and 0.2-4 dated 2012-01-10
Description: Functions scientific.mpfr() and get.format.from.sci()
allow to compute format information for numbers with high
accuracy using Rmpfr package. Function check.format() compares
this to the output of R base function format.info(). On
platforms with a proper "long double" type, the error should
not exceed 1 ulp of the input number.
Author: Petr Savicky
Maintainer: Petr Savicky
numConversion-0.1-1/numConversion/R/check.all.R |only
numConversion-0.1-1/numConversion/R/check.as.character.R |only
numConversion-0.1-1/numConversion/man/check.as.character.Rd |only
numConversion-0.2-4/numConversion/DESCRIPTION | 23 +++++------
numConversion-0.2-4/numConversion/MD5 |only
numConversion-0.2-4/numConversion/NAMESPACE |only
numConversion-0.2-4/numConversion/R/check.R |only
numConversion-0.2-4/numConversion/R/scientific.R |only
numConversion-0.2-4/numConversion/man/check.format.Rd |only
numConversion-0.2-4/numConversion/man/check.random.Rd |only
numConversion-0.2-4/numConversion/man/get.format.from.sci.Rd |only
numConversion-0.2-4/numConversion/man/scientific.mpfr.Rd |only
numConversion-0.2-4/numConversion/tests |only
13 files changed, 12 insertions(+), 11 deletions(-)
Title: Epidemiological calculator
Diff between epicalc versions 2.14.0.0 dated 2011-11-16 and 2.14.0.2 dated 2012-01-10
Description: Functions making R easy for epidemiological calculation.
Author: Virasakdi Chongsuvivatwong
Maintainer: Virasakdi Chongsuvivatwong
DESCRIPTION | 8 ++---
MD5 | 6 +--
R/epicalc.R | 91 +++++++++++++++++++++++++++++++++-------------------------
man/adjust.rd | 3 +
4 files changed, 63 insertions(+), 45 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-01 1.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-01 1.0-1
Title: An R Package for the Calculation and Visualization of Student
Growth Percentiles & Percentile Growth Trajectories.
Diff between SGP versions 0.7-1.0 dated 2011-10-12 and 0.8-0.0 dated 2012-01-10
Description: Functions to calculate student growth percentiles and
percentile growth projections/trajectories for students using
large scale, longitudinal assessment data. Functions use
quantile regression to estimate the conditional density
associated with each student's achievement history. Percentile
growth projections/trajectories are calculated using the
coefficient matrices derived from the quantile regression
analyses and specify what percentile growth is required for
students to reach future achievement targets.
Author: Damian W. Betebenner
Maintainer: Damian W. Betebenner
SGP-0.7-1.0/SGP/R/baselineSGPshort.R |only
SGP-0.7-1.0/SGP/data/sgpData.rda |only
SGP-0.7-1.0/SGP/data/sgpData_LONG.rda |only
SGP-0.7-1.0/SGP/data/stateData.rda |only
SGP-0.7-1.0/SGP/man/baselineSGPshort.Rd |only
SGP-0.7-1.0/SGP/man/sgpData.Rd |only
SGP-0.7-1.0/SGP/man/sgpData_LONG.Rd |only
SGP-0.7-1.0/SGP/man/stateData.Rd |only
SGP-0.7-1.0/SGP/tests |only
SGP-0.8-0.0/SGP/DESCRIPTION | 51 +
SGP-0.8-0.0/SGP/LICENSE | 4
SGP-0.8-0.0/SGP/MD5 | 85 +--
SGP-0.8-0.0/SGP/NAMESPACE | 3
SGP-0.8-0.0/SGP/R/abcSGP.R | 37 -
SGP-0.8-0.0/SGP/R/analyzeSGP.R | 626 ++++++++++++++++--------
SGP-0.8-0.0/SGP/R/as.splineMatrix.R |only
SGP-0.8-0.0/SGP/R/baselineSGP.R | 400 +++++++++++----
SGP-0.8-0.0/SGP/R/bubblePlot.R | 36 -
SGP-0.8-0.0/SGP/R/bubblePlot_Styles.R | 29 -
SGP-0.8-0.0/SGP/R/combineSGP.R | 275 +++++++---
SGP-0.8-0.0/SGP/R/growthAchievementPlot.R | 98 ++-
SGP-0.8-0.0/SGP/R/is.splineMatrix.R |only
SGP-0.8-0.0/SGP/R/outputSGP.R | 14
SGP-0.8-0.0/SGP/R/prepareSGP.R | 75 ++
SGP-0.8-0.0/SGP/R/studentGrowthPercentiles.R | 183 ++++---
SGP-0.8-0.0/SGP/R/studentGrowthPlot.R | 27 -
SGP-0.8-0.0/SGP/R/studentGrowthPlot_Styles.R | 47 +
SGP-0.8-0.0/SGP/R/studentGrowthProjections.R | 245 ++++++---
SGP-0.8-0.0/SGP/R/summarizeSGP.R | 8
SGP-0.8-0.0/SGP/R/visualizeSGP.R | 219 +++++---
SGP-0.8-0.0/SGP/data/SGPstateData.rda |only
SGP-0.8-0.0/SGP/data/datalist | 4
SGP-0.8-0.0/SGP/inst/CITATION | 10
SGP-0.8-0.0/SGP/inst/NEWS | 77 ++
SGP-0.8-0.0/SGP/man/SGP-package.Rd | 10
SGP-0.8-0.0/SGP/man/SGPstateData.Rd |only
SGP-0.8-0.0/SGP/man/abcSGP.Rd | 21
SGP-0.8-0.0/SGP/man/analyzeSGP.Rd | 34 -
SGP-0.8-0.0/SGP/man/baselineSGP.Rd | 74 +-
SGP-0.8-0.0/SGP/man/bubblePlot.Rd | 8
SGP-0.8-0.0/SGP/man/bubblePlot_Styles.Rd | 2
SGP-0.8-0.0/SGP/man/combineSGP.Rd | 5
SGP-0.8-0.0/SGP/man/growthAchievementPlot.Rd | 8
SGP-0.8-0.0/SGP/man/splineMatrix-class.Rd | 12
SGP-0.8-0.0/SGP/man/studentGrowthPercentiles.Rd | 31 -
SGP-0.8-0.0/SGP/man/studentGrowthPlot.Rd | 2
SGP-0.8-0.0/SGP/man/studentGrowthPlot_Styles.Rd | 9
SGP-0.8-0.0/SGP/man/studentGrowthProjections.Rd | 20
SGP-0.8-0.0/SGP/man/summarizeSGP.Rd | 2
SGP-0.8-0.0/SGP/man/visualizeSGP.Rd | 10
50 files changed, 1905 insertions(+), 896 deletions(-)
Title: Regularized Random Forest
Diff between RRF versions 1.0 dated 2011-11-14 and 1.1 dated 2012-01-10
Description: Feature Selection with Regularized Random Forest. This
package is based on the 'randomForest' package by Andy Liaw.
The key difference is the RRF function that builds a
regularized random forest.
Author: Fortran original by Leo Breiman and Adele Cutler, R port by
Andy Liaw and Matthew Wiener, Regularized random forest by
Houtao Deng.
Maintainer: Houtao Deng
DESCRIPTION | 16 +++++++++++-----
MD5 | 10 +++++-----
NEWS | 2 ++
inst/CITATION | 22 +++++++++++-----------
inst/NEWS | 2 ++
man/RRF.Rd | 14 ++++----------
6 files changed, 35 insertions(+), 31 deletions(-)
Title: Rainbow plots, bagplots and boxplots for functional data
Diff between rainbow versions 2.7 dated 2011-10-17 and 2.8 dated 2012-01-10
Description: Functions and datasets for functional data display and
outlier detection.
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang
CHANGELOG | 30 +++++++++++++++++-------------
DESCRIPTION | 8 ++++----
MD5 | 9 ++++++---
data/ElNino2011.rda |only
data/ElNino2011smooth.rda |only
man/ElNino.Rd | 7 ++-----
man/ElNino2011.Rd |only
7 files changed, 29 insertions(+), 25 deletions(-)
Title: Tools for the analysis of air pollution data
Diff between openair versions 0.5-11 dated 2011-10-05 and 0.5-16 dated 2012-01-10
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically hourly time series and both monitoring
data and dispersion model output can be analysed. Many
functions can also be applied to other data, including
meteorological and traffic data.
Author: David Carslaw and Karl Ropkins
Maintainer: David Carslaw
DESCRIPTION | 15 -
MD5 | 136 +++++-----
NAMESPACE | 10
NEWS | 50 +++
R/GoogleMapsPlot.R | 137 +++++++++-
R/TaylorDiagram.R | 161 +++++++-----
R/TheilSen.R | 33 +-
R/aqStats.R | 1
R/calcFno2.R | 15 -
R/calendarPlot.R | 7
R/checkPrep.R | 4
R/corPlot.R | 20 -
R/importAURNCsv.R | 1
R/modStats.R | 20 +
R/openColours.R | 82 +++++-
R/percentileRose.R | 34 +-
R/polarAnnulus.R | 47 ++-
R/polarCluster.R |only
R/polarPlot.R | 575 ++++++++++++++++++++++++---------------------
R/quickText.R | 2
R/scatterPlot.R | 52 ++--
R/smoothTrend.R | 67 ++---
R/timeAverage.R | 86 +++++-
R/timeVariation.R | 511 ++++++++++++++++++++++++---------------
R/trajPlot.R | 93 ++++++-
R/utilities.R | 181 ++++++++++++--
R/windRose.R | 60 ++--
R/zzz.R | 120 ++++-----
data/mydata.RData |binary
inst/CITATION | 17 +
man/GoogleMapsPlot.Rd | 53 ++--
man/TaylorDiagram.Rd | 62 +++-
man/TheilSen.Rd | 30 +-
man/aqStats.Rd | 2
man/calcFno2.Rd | 15 -
man/calcPercentile.Rd | 7
man/calendarPlot.Rd | 16 -
man/conditionalQuantile.Rd | 14 -
man/corPlot.Rd | 6
man/cutData.Rd | 6
man/drawOpenKey.Rd | 12
man/import.Rd | 24 +
man/importADMS.Rd | 26 +-
man/importAURN.Rd | 2
man/importAURNCsv.Rd | 20 -
man/importKCL.Rd | 2
man/importTraj.Rd | 4
man/kernelExceed.Rd | 15 -
man/linearRelation.Rd | 20 -
man/modStats.Rd | 8
man/openColours.Rd | 41 ++-
man/percentileRose.Rd | 33 +-
man/polarAnnulus.Rd | 44 ++-
man/polarCluster.Rd |only
man/polarFreq.Rd | 23 -
man/polarPlot.Rd | 138 ++++++----
man/quickText.Rd | 2
man/rollingMean.Rd | 4
man/scatterPlot.Rd | 27 +-
man/selectByDate.Rd | 30 +-
man/selectRunning.Rd | 2
man/smoothTrend.Rd | 27 +-
man/splitByDate.Rd | 4
man/summaryPlot.Rd | 15 -
man/timeAverage.Rd | 24 +
man/timePlot.Rd | 28 +-
man/timeVariation.Rd | 101 +++++--
man/trajPlot.Rd | 41 ++-
man/trendLevel.Rd | 23 -
man/windRose.Rd | 26 +-
70 files changed, 2258 insertions(+), 1256 deletions(-)
Title: Multivariate meta-analysis and meta-regression
Diff between mvmeta versions 0.2.3 dated 2011-06-28 and 0.2.4 dated 2012-01-10
Description: The package mvmeta contains functions to run fixed and
random effects meta-analysis and meta-regression on multiple
outcomes.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini
DESCRIPTION | 8 ++--
MD5 |only
R/blup.mvmeta.R | 15 ++++---
R/coef.mvmeta.R | 2 -
R/fitted.mvmeta.R | 2 -
R/mvmeta.R | 83 ++++++++++++++++++++++++++---------------
R/mvmeta.igls.R | 6 +--
R/mvmeta.ml.R | 6 +--
R/mvmeta.ml.grad.R | 6 +--
R/mvmeta.reml.R | 8 ++--
R/mvmeta.reml.grad.R | 6 +--
R/predict.mvmeta.R | 65 ++++++++++++++++++--------------
R/print.mvmeta.R | 97 ++++++++++++-------------------------------------
R/print.qtest.mvmeta.R | 23 +++++++----
R/qtest.mvmeta.R | 41 +-------------------
R/summary.mvmeta.R | 45 +++++++++++++---------
inst/ChangeLog | 21 ++++++++++
man/mvmeta-package.Rd | 15 ++++---
man/mvmeta.Rd | 9 ++--
man/mvmeta.check.Rd | 1
man/mvmeta.ml.Rd | 34 ++++++++---------
man/predict.mvmeta.Rd | 2 -
man/qtest.mvmeta.Rd | 18 ++++++---
man/summary.mvmeta.Rd | 8 +---
24 files changed, 256 insertions(+), 265 deletions(-)
Title: Make dealing with dates a little easier
Diff between lubridate versions 0.2.5 dated 2011-05-12 and 0.2.6 dated 2012-01-10
Description: Lubridate makes it easier to work with dates and times by
providing functions to identify and parse date-time data,
extract and modify components of a date-time (years, months,
days, hours, minutes, and seconds), perform accurate math on
date-times, handle time zones and Daylight Savings Time.
Lubridate has a consistent, memorable syntax, that makes
working with dates fun instead of frustrating.
Author: Garrett Grolemund
Maintainer: Garrett Grolemund
DESCRIPTION | 8 -
MD5 |only
NAMESPACE | 331 ++++++++++++++++++++++++++++-------------------
NEWS | 8 +
R/help.r | 2
R/zzz.r | 20 +-
data/lakers.rda |binary
man/DateCoercion.Rd | 4
man/DateUpdate.Rd | 78 +++++++----
man/add_dates.Rd | 19 +-
man/add_epoch_to_date.Rd | 26 ++-
man/am.Rd | 29 ++--
man/as.duration.Rd | 43 +++---
man/as.interval.Rd | 47 +++---
man/as.period.Rd | 39 +++--
man/ceiling_date.Rd | 41 +++--
man/decimal_date.Rd | 25 ++-
man/dseconds.Rd | 95 +++++++------
man/dst.Rd | 32 ++--
man/duration.Rd | 62 ++++----
man/floor_date.Rd | 41 +++--
man/force_tz.Rd | 41 +++--
man/hm.Rd | 35 ++--
man/hms.Rd | 36 ++---
man/hour.Rd | 40 ++---
man/int_end.Rd | 33 ++--
man/int_start.Rd | 33 ++--
man/is.Date.Rd | 29 ++--
man/is.POSIXt.Rd | 36 +++--
man/is.difftime.Rd | 30 ++--
man/is.duration.Rd | 31 ++--
man/is.instant.Rd | 44 +++---
man/is.interval.Rd | 31 ++--
man/is.period.Rd | 31 ++--
man/is.timespan.Rd | 33 +++-
man/lakers.Rd | 15 --
man/leap_year.Rd | 30 ++--
man/lubridate.Rd | 44 +++---
man/make_difftime.Rd | 27 ++-
man/minute.Rd | 40 ++---
man/month.Rd | 55 ++++---
man/ms.Rd | 35 ++--
man/new_difftime.Rd | 40 +++--
man/new_duration.Rd | 46 +++---
man/new_epoch.Rd | 25 +--
man/new_interval.Rd | 44 +++---
man/new_period.Rd | 40 +++--
man/now.Rd | 32 ++--
man/origin.Rd | 22 +--
man/parse_date.Rd | 43 +++---
man/pretty.dates.Rd | 58 ++++----
man/reclass_date.Rd | 6
man/round_date.Rd | 41 +++--
man/second.Rd | 40 ++---
man/seconds.Rd | 80 ++++++-----
man/subtract_dates.Rd | 19 +-
man/sundays.Rd | 30 +---
man/today.Rd | 32 ++--
man/tz.Rd | 48 +++---
man/wday.Rd | 61 +++++---
man/week.Rd | 40 ++---
man/with_tz.Rd | 41 +++--
man/yday.Rd | 56 ++++---
man/year.Rd | 41 +++--
man/ymd.Rd | 57 ++++----
man/ymd_hms.Rd | 64 ++++-----
tests/test-all.R | 2
67 files changed, 1543 insertions(+), 1144 deletions(-)
Title: Grain-size Statistics and Description of Sediment
Diff between G2Sd versions 1.1 dated 2012-01-09 and 1.2 dated 2012-01-10
Description: G2Sd package gives full descriptive statistics and a
physical description of sediment obtained with AFNOR or phi
sieves according to the grain size distribution.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon
DESCRIPTION | 11 +++++++----
MD5 | 2 +-
2 files changed, 8 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-20 1.0.4.1
2009-11-09 1.0.3.4
2009-11-01 1.0.3.3
2009-10-11 1.0.3.2
2009-02-08 1.0.3.1
2008-11-11 1.0.3
2008-02-11 1.0.2
2007-10-11 1.0.1
2007-09-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-04-16 0.7-2
2009-04-15 0.7-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-10 0.4.6
2010-06-11 0.4.5
Title: Spatial and Phylogenetic Analysis of Community Diversity
Diff between spacodiR versions 0.11.07292011 dated 2011-07-30 and 0.12.0108 dated 2012-01-10
Description: SPACoDi is primarily designed to characterise the
structure and phylogenetic diversity of communities using
abundance or presence-absence data of species among community
plots.
Author: Jonathan Eastman, Timothy Paine, and Olivier Hardy
Maintainer: Jonathan Eastman
ChangeLog | 6 +++
DESCRIPTION | 8 ++---
MD5 |only
R/dataManipulation.R | 4 +-
R/temporalAnalysis.R | 2 -
man/spacodi.calc.Rd | 81 ++++++++++++++++++++++++++++++++++++++++++++-------
src/Makevars | 28 +----------------
src/Makevars.win | 4 --
src/spacodi.c | 64 ++++++++++++++++++++--------------------
9 files changed, 118 insertions(+), 79 deletions(-)
Title: Bayesian sampler of the trait-evolutionary process
Diff between auteur versions 0.12.0102 dated 2012-01-04 and 0.12.0108 dated 2012-01-10
Description: Identifies shifts in process of continuous-trait evolution
on phylogenetic trees
Author: JM Eastman, ME Alfaro, AL Hipp, P Joyce, Matthew Pennell, and
LJ Harmon
Maintainer: Jonathan Eastman
ChangeLog | 2 +-
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/rjmcmc.R | 2 +-
src/Makevars | 29 ++---------------------------
src/Makevars.win | 4 +---
6 files changed, 14 insertions(+), 41 deletions(-)