Title: Poisson-Gamma Additive Models.
Diff between pgam versions 0.4.11 dated 2011-01-03 and 0.4.12 dated 2012-01-13
Description: This work is an extension of the state space model for
Poisson count data, Poisson-Gamma model, towards a
semiparametric specification. Just like the generalized
additive models (GAM), cubic splines are used for covariate
smoothing. The semiparametric models are fitted by an iterative
process that combines maximization of likelihood and
backfitting algorithm.
Author: Washington Junger
Maintainer: Washington Junger
DESCRIPTION | 10 +++++-----
MD5 |only
NAMESPACE |only
R/zzz.r | 6 +++---
data/aihrio.rda |binary
5 files changed, 8 insertions(+), 8 deletions(-)
Title: Generalised Linear Mixed Models and Spatial Models with WinBUGS,
BRugs, or OpenBUGS
Diff between glmmBUGS versions 1.9 dated 2010-11-08 and 2.0 dated 2012-01-13
Description: Write bugs model files for hierarchical and spatial
models, arranges unbalanced data in ragged arrays, and creates
starting values.
Author: Patrick Brown
Maintainer: Patrick Brown
DESCRIPTION | 14 +---
MD5 |only
NAMESPACE | 2
R/CondSimuPosterior.R |only
R/addSpatial.R | 145 +++++++++++++++++++++++++++++++++++----------
R/checkChain.R | 2
R/getStartingValues.R | 43 ++++++++++---
R/glmmBUGS.R | 19 ++++-
R/spatialFittedValues.R |only
R/startingFunction.R | 13 +++-
R/summaryChain.R | 52 +++++++++++++++-
R/writeBugsModel.R | 50 +++++++++++----
data/muscleResult.rda |binary
data/ontario.RData |binary
data/ontarioResult.RData |binary
data/popDataAdjMat.RData |binary
data/rongelapResult.RData |only
data/rongelapUTM.RData |only
man/CondSimuPosterior.Rd |only
man/glmmBUGS.Rd | 79 ++++++++++++++++++++++--
man/rongelapResult.Rd |only
man/rongelapUTM.Rd |only
man/spatialFittedValues.Rd |only
man/startingFunction.Rd | 4 -
man/summaryChain.Rd | 3
man/writeBugsModel.Rd | 2
26 files changed, 352 insertions(+), 76 deletions(-)
Title: Weighted Correlation Network Analysis
Diff between WGCNA versions 1.18-1 dated 2012-01-04 and 1.18-2 dated 2012-01-13
Description: Functions necessary to perform Weighted Correlation
Network Analysis
Author: Peter Langfelder
Maintainer: Peter Langfelder
Changelog | 4 ++++
DESCRIPTION | 15 +++++++++------
MD5 | 8 ++++----
R/Functions.R | 2 +-
man/WGCNA-package.Rd | 4 ++--
5 files changed, 20 insertions(+), 13 deletions(-)
Title: Tool for sending interactive plots with tool-tip content.
Diff between sendplot versions 3.8.7 dated 2011-02-08 and 3.8.8 dated 2012-01-13
Description: A tool for visualizing data
Author: Daniel P Gaile
Maintainer: Lori A. Shepherd
sendplot-3.8.7/sendplot/inst/doc/hand.jpg |only
sendplot-3.8.7/sendplot/inst/doc/heatmap.pdf |only
sendplot-3.8.7/sendplot/inst/doc/legend.pdf |only
sendplot-3.8.7/sendplot/inst/doc/numbers.jpg |only
sendplot-3.8.7/sendplot/inst/doc/sendplot.R |only
sendplot-3.8.7/sendplot/inst/doc/sendplot.dvi |only
sendplot-3.8.7/sendplot/inst/doc/testDot.tif |only
sendplot-3.8.8/sendplot/.Rinstignore |only
sendplot-3.8.8/sendplot/DESCRIPTION | 8 ++++----
sendplot-3.8.8/sendplot/MD5 |only
sendplot-3.8.8/sendplot/R/makeImap.R | 6 ++++--
sendplot-3.8.8/sendplot/inst/doc/iExHeat.png |binary
sendplot-3.8.8/sendplot/inst/doc/iExPlotXY.png |binary
sendplot-3.8.8/sendplot/inst/doc/sendplot.pdf |binary
14 files changed, 8 insertions(+), 6 deletions(-)
Title: toolbox for pseudo and quasi random number generation and RNG
tests.
Diff between randtoolbox versions 1.10 dated 2011-04-25 and 1.11 dated 2012-01-13
Description: The package provides (1) pseudo random generators -
general linear congruential generators (Park Miller) and
multiple recursive generators (Knuth TAOCP), generalized
feedback shift register (SF-Mersenne Twister algorithm and WELL
generators); (2) quasi random generators - the Torus algorithm,
the Sobol sequence, the Halton sequence (thus include Van der
Corput sequence) and (3) some additional tests such as the gap
test, the serial test, the poker test... The package depends on
rngWELL package but it can be provided without this dependency
on demand to the maintainer. For true random number generation,
use the 'random' package, for Latin Hypercube Sampling (a
hybrid QMC method), use the 'lhs' package, a number of RNGs and
tests for RNGs are provided by 'RDieHarder', all available on
CRAN. There is also a small stand-alone package 'rngwell19937'
for the WELL19937a RNG.
Author: Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm
Wuertz (except underlying C codes of (i) the SFMT algorithm
from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from
D. Knuth). See LICENCE file for details.
Maintainer: Christophe Dutang
DESCRIPTION | 12 +-
MD5 |only
NAMESPACE | 4
R/pseudoRNG.R | 6 -
R/quasiRNG.R | 8 -
R/rngWELLScriptR.R |only
R/runifInterface.R | 35 +++----
R/testRNG.R | 127 +++++++++++++++++--------
R/zzz.R | 12 +-
inst/CITATION | 6 -
inst/NEWS | 24 ++++
inst/doc/randtoolbox.Rnw | 2
inst/doc/randtoolbox.pdf |binary
inst/doc/src/fullpres.Rnw | 17 +--
inst/doc/src/shortintro.Rnw | 1
man/colltest.Rd | 9 +
man/colltestsparse.Rd |only
man/getWELLState.Rd |only
man/rngWELLScriptR.Rd |only
man/runifInterface.Rd | 120 +++++++++++-------------
src/LowDiscrepancy.f | 216 ++++++++++++++++++++++----------------------
src/Makevars | 1
src/WRITE2remove.txt |only
src/assert2remove.txt |only
src/congruRand.c | 8 -
src/init.c | 2
src/knuthTAOCP2002.c | 10 +-
src/mt19937ar.c | 8 -
src/printf2remove.txt |only
src/randtoolbox.c | 7 +
src/runifInterface.c | 7 -
src/runifInterface.h | 5 -
tests |only
33 files changed, 358 insertions(+), 289 deletions(-)
Title: OpenCPU Demo apps.
Diff between opencpu.demo versions 0.4 dated 2012-01-12 and 0.4-1 dated 2012-01-13
Description: Some demo R functions and apps for OpenCPU
Author: Various contributors
Maintainer: Jeroen Ooms
DESCRIPTION | 8 ++++----
MD5 | 20 +++++++++++---------
NAMESPACE | 1 +
R/liveplot.R | 3 +++
R/makefunction.R |only
R/testplothandlers.R | 2 ++
inst/opencpu/apps/index.html | 4 ++--
inst/opencpu/apps/storefunction/index.html | 2 +-
man/liveplot.Rd | 2 +-
man/makefunction.Rd |only
man/testplothandlers.Rd | 2 +-
opencpu.demo-Ex.R | 6 ++----
12 files changed, 28 insertions(+), 22 deletions(-)
Title: Random number generator based on AES cipher
Diff between randaes versions 0.1 dated 2005-09-10 and 0.3 dated 2012-01-13
Description: The deterministic part of the Fortuna cryptographic
pseudorandom number generator, described by Schneier & Ferguson
"Practical Cryptography"
Author: Thomas Lumley
Maintainer: Thomas Lumley
randaes-0.1/randaes/R/firstlib.R |only
randaes-0.3/randaes/DESCRIPTION | 16 ++++++++++------
randaes-0.3/randaes/MD5 |only
randaes-0.3/randaes/NAMESPACE |only
randaes-0.3/randaes/R/test.R |only
randaes-0.3/randaes/src/raes.c | 11 +++++------
6 files changed, 15 insertions(+), 12 deletions(-)
Title: Mobilize plots and functions
Diff between Mobilize versions 2.9 dated 2011-12-27 and 2.9-4 dated 2012-01-13
Description: Some canned plots and functions designed for the mobilize
project. Designed to be called remotely.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 20 +++++++++-----------
MD5 | 28 ++++++++++++++++++++--------
NAMESPACE | 2 ++
R/biplot.R | 4 +++-
R/campaigndata.R | 10 +++++-----
R/distributionplot.R | 1 +
R/gmapdata.R | 5 +++++
R/responseplot.R | 1 +
R/userplot.R | 3 ++-
debian |only
test |only
11 files changed, 48 insertions(+), 26 deletions(-)
Title: Extra Map Databases
Diff between mapdata versions 2.2-0 dated 2011-11-03 and 2.2-1 dated 2012-01-13
Description: Supplement to maps package, providing the larger and/or
higher-resolution databases.
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Maintainer: Ray Brownrigg
DESCRIPTION | 16
MD5 | 10
R/zzz.R | 2
src/worldHires.gon | 2
src/worldHires.line | 1677 +++++++++++++++++++++++------------------------
src/worldHires.linestats | 2
6 files changed, 861 insertions(+), 848 deletions(-)
Title: Gaussian Copula Marginal Regression
Diff between gcmr versions 0.1 dated 2011-08-10 and 0.2 dated 2012-01-13
Description: likelihood inference in Gaussian copula marginal
regression models
Author: Guido Masarotto and Cristiano Varin
Maintainer: Guido Masarotto
DESCRIPTION | 8 +++---
MD5 | 29 +++++++++++------------
NAMESPACE | 26 ++++++++++++--------
R/cormat.R | 26 ++++----------------
R/gcmr.R | 13 +++++++++-
R/marginals.R | 63 ++++++++------------------------------------------
inst |only
man/cluster.cormat.Rd | 2 -
man/estfun.gcmr.Rd | 8 +++---
man/gcmr-package.Rd | 8 ++++--
man/gcmr.Rd | 14 +++++++----
man/gcmr.options.Rd | 4 +--
man/gs.marg.Rd | 14 +----------
man/marginal.gcmr.Rd | 2 -
man/matern.cormat.Rd | 12 ++++-----
man/profile.gcmr.Rd | 6 ++--
16 files changed, 97 insertions(+), 138 deletions(-)
Title: eiPack: Ecological Inference and Higher-Dimension Data
Management
Diff between eiPack versions 0.1-6 dated 2009-10-14 and 0.1-7 dated 2012-01-13
Description: Provides methods for analyzing RxC ecological contingency
tables using the extreme case analysis, ecological regression,
and Multinomial-Dirichlet ecological inference models. Also
provides tools for manipulating higher-dimension data objects.
Author: Olivia Lau
Maintainer: Olivia Lau
eiPack-0.1-6/eiPack/data/redistrict.tab |only
eiPack-0.1-6/eiPack/data/senc.tab |only
eiPack-0.1-6/eiPack/data/tuneA.tab |only
eiPack-0.1-6/eiPack/data/tuneB.tab |only
eiPack-0.1-6/eiPack/inst |only
eiPack-0.1-7/eiPack/DESCRIPTION | 8 ++++----
eiPack-0.1-7/eiPack/MD5 |only
eiPack-0.1-7/eiPack/data/redistrict.tab.gz |only
eiPack-0.1-7/eiPack/data/senc.tab.gz |only
eiPack-0.1-7/eiPack/data/tuneA.tab.gz |only
eiPack-0.1-7/eiPack/data/tuneB.tab.gz |only
11 files changed, 4 insertions(+), 4 deletions(-)
Title: Species distribution modeling
Diff between dismo versions 0.7-14 dated 2011-12-24 and 0.7-15 dated 2012-01-13
Description: Functions for species distribution modeling, that is,
predicting entire geographic distributions form occurences at
specific sites.
Author: Robert J. Hijmans, Steven Phillips, John Leathwick and Jane
Elith
Maintainer:
DESCRIPTION | 17 ++++++++++-------
MD5 | 10 +++++-----
R/gbif.R | 46 ++++++++++++++++++----------------------------
R/randomPoints.R | 11 ++++++-----
R/shp.R | 6 ++----
man/shp.Rd | 7 +++++--
6 files changed, 46 insertions(+), 51 deletions(-)
Title: Continuous Time Autoregressive Models
Diff between cts versions 1.0-8 dated 2011-11-22 and 1.0-9 dated 2012-01-13
Description: Continuous Time Autoregressive Models and the Kalman
Filter
Author: Fortran original by G. Tunnicliffe-Wilson and Zhu Wang, R port
by Zhu Wang with contribution from John Nash.
Maintainer: Zhu Wang
cts-1.0-8/cts/R/plot.spec.car.R |only
cts-1.0-8/cts/R/plot.spec.ls.R |only
cts-1.0-8/cts/man/plot.spec.car.Rd |only
cts-1.0-8/cts/man/plot.spec.ls.Rd |only
cts-1.0-9/cts/DESCRIPTION | 12 ++-
cts-1.0-9/cts/MD5 | 50 +++++++-------
cts-1.0-9/cts/NAMESPACE | 2
cts-1.0-9/cts/NEWS | 5 +
cts-1.0-9/cts/R/plotSpecCar.R |only
cts-1.0-9/cts/R/plotSpecLs.R |only
cts-1.0-9/cts/R/spec.ls.R | 2
cts-1.0-9/cts/R/spectrum.car.R | 2
cts-1.0-9/cts/inst/doc/kf.Rnw | 12 ---
cts-1.0-9/cts/inst/doc/kf.bib | 2
cts-1.0-9/cts/inst/doc/kf.pdf |binary
cts-1.0-9/cts/man/plotSpecCar.Rd |only
cts-1.0-9/cts/man/plotSpecLs.Rd |only
cts-1.0-9/cts/man/spec.ls.Rd | 4 -
cts-1.0-9/cts/src/a9rntc.f | 13 ++-
cts-1.0-9/cts/src/a9rntd.f | 11 ++-
cts-1.0-9/cts/src/a9rnti.f | 11 ++-
cts-1.0-9/cts/src/a9rntl.f | 11 ++-
cts-1.0-9/cts/src/a9rntr.f | 11 ++-
cts-1.0-9/cts/src/d1mach.f | 26 ++++---
cts-1.0-9/cts/src/e9rint.f | 7 +-
cts-1.0-9/cts/src/envirn.f | 8 ++
cts-1.0-9/cts/src/i1mach.f | 22 ++++--
cts-1.0-9/cts/src/seterr.f | 36 ++++++----
cts-1.0-9/cts/src/stkdmp.f | 126 ++++++++++++++++++++++---------------
cts-1.0-9/cts/src/u9dmp.f | 20 ++---
30 files changed, 233 insertions(+), 160 deletions(-)
Title: Color Space Manipulation
Diff between colorspace versions 1.1-0 dated 2011-05-16 and 1.1-1 dated 2012-01-13
Description: Carries out mapping between assorted color spaces
including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV),
CIELAB and polar CIELAB. Qualitative, sequential, and diverging
color palettes based on HCL colors are provided.
Author: Ross Ihaka [aut, cre], Paul Murrell [aut], Kurt Hornik [aut],
Achim Zeileis [aut]
Maintainer: Ross Ihaka
DESCRIPTION | 19 +++++++++++++------
MD5 |only
NAMESPACE | 1 +
NEWS | 8 ++++++++
R/desaturate.R |only
inst/doc/color.bib | 2 +-
inst/doc/hcl-colors.pdf |binary
man/desaturate.Rd |only
man/rainbow_hcl.Rd | 39 ++++++++++++++++++++++++++++++++-------
src/colorspace.c | 4 ++--
10 files changed, 57 insertions(+), 16 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 5.10-13 dated 2012-01-04 and 5.11-06 dated 2012-01-13
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 20 ++++++++--------
MD5 | 42 +++++++++++++++++-----------------
R/createGrid.R | 9 +++++++
R/createModel.R | 24 +++++++++++++++++--
R/modelLookup.R | 54 +++++++++++++++++++++++++++++++++-----------
R/predictionFunction.R | 5 ++++
R/probFunction.R | 6 ++++
R/selection.R | 1
R/workflows.R | 47 +++++++++++++++++---------------------
inst/NEWS | 14 +++++++++++
inst/doc/allPred.pdf |binary
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.Rnw | 42 +++-------------------------------
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
inst/doc/compact.Rout | 2 -
inst/doc/filteredPred.pdf |binary
inst/doc/min.pdf |binary
inst/doc/speedup.pdf |binary
inst/modelKey.txt | 2 -
man/train.Rd | 4 ++-
22 files changed, 160 insertions(+), 112 deletions(-)