Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.9-58 dated 2011-12-22 and 1.9-63 dated 2012-01-15
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions, as well as map algebra. Processing of
very large files is supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-1.9-58/raster/R/Arithvector.R |only
raster-1.9-58/raster/R/aggregateSP.R |only
raster-1.9-58/raster/R/appendSP.R |only
raster-1.9-58/raster/R/cropSP.R |only
raster-1.9-58/raster/R/disaggregateSP.R |only
raster-1.9-58/raster/R/mergeSP.R |only
raster-1.9-58/raster/R/roundCoords.R |only
raster-1.9-58/raster/R/select.R |only
raster-1.9-58/raster/man/ArithVector.Rd |only
raster-1.9-58/raster/man/aggregateSP.Rd |only
raster-1.9-58/raster/man/disaggregateSP.Rd |only
raster-1.9-58/raster/man/mergeSP.Rd |only
raster-1.9-58/raster/man/mergeSP2.Rd |only
raster-1.9-58/raster/man/select.Rd |only
raster-1.9-63/raster/ChangeLog | 9 +
raster-1.9-63/raster/DESCRIPTION | 13 +-
raster-1.9-63/raster/MD5 | 129 +++++++++++++---------------
raster-1.9-63/raster/R/artith.R | 13 +-
raster-1.9-63/raster/R/bilinearValue.R | 25 +++--
raster-1.9-63/raster/R/buffer.R |only
raster-1.9-63/raster/R/cellsFromExtent.R | 5 -
raster-1.9-63/raster/R/click.R | 22 ----
raster-1.9-63/raster/R/commonDataType.R | 9 +
raster-1.9-63/raster/R/crop.R | 5 -
raster-1.9-63/raster/R/direction.R | 2
raster-1.9-63/raster/R/disaggregate.R | 2
raster-1.9-63/raster/R/distanceRows.R | 2
raster-1.9-63/raster/R/drivers.R | 2
raster-1.9-63/raster/R/expand.R | 3
raster-1.9-63/raster/R/extension.R | 2
raster-1.9-63/raster/R/extract.R | 4
raster-1.9-63/raster/R/extractLines.R | 2
raster-1.9-63/raster/R/extractPolygons.R | 10 +-
raster-1.9-63/raster/R/focal.R | 12 +-
raster-1.9-63/raster/R/gdalFormats.R | 2
raster-1.9-63/raster/R/gridDistance2.R |only
raster-1.9-63/raster/R/hdrBIL.R | 2
raster-1.9-63/raster/R/hdrPRJ.R | 4
raster-1.9-63/raster/R/imageplot2.R | 15 +--
raster-1.9-63/raster/R/index.R | 2
raster-1.9-63/raster/R/intersect.R |only
raster-1.9-63/raster/R/mask.R | 2
raster-1.9-63/raster/R/merge.R | 6 -
raster-1.9-63/raster/R/mosaic.R | 2
raster-1.9-63/raster/R/optionsGet.R | 18 ++-
raster-1.9-63/raster/R/plotRaster.R | 2
raster-1.9-63/raster/R/plotRaster2.R | 2
raster-1.9-63/raster/R/projectRaster.R | 76 +++++++++++-----
raster-1.9-63/raster/R/rasterFromBIL.R | 8 +
raster-1.9-63/raster/R/rasterFromFile.R | 16 +--
raster-1.9-63/raster/R/rasterFromGDAL.R | 4
raster-1.9-63/raster/R/readCells.R | 1
raster-1.9-63/raster/R/resample.R | 2
raster-1.9-63/raster/R/rotate.R | 2
raster-1.9-63/raster/R/roundExtent.R |only
raster-1.9-63/raster/R/tmpFile.R | 51 ++++++-----
raster-1.9-63/raster/R/union.R |only
raster-1.9-63/raster/inst/doc/Raster.Rnw | 82 ++++++++++-------
raster-1.9-63/raster/inst/doc/Raster.pdf |binary
raster-1.9-63/raster/inst/doc/functions.Rnw | 3
raster-1.9-63/raster/inst/doc/functions.pdf |binary
raster-1.9-63/raster/man/aggregate.Rd | 4
raster-1.9-63/raster/man/buffer.Rd |only
raster-1.9-63/raster/man/cellsFromExtent.Rd | 2
raster-1.9-63/raster/man/click.Rd | 17 +--
raster-1.9-63/raster/man/disaggregate.Rd | 2
raster-1.9-63/raster/man/intersect.Rd |only
raster-1.9-63/raster/man/intersectExtent.Rd | 11 +-
raster-1.9-63/raster/man/merge.Rd | 14 ---
raster-1.9-63/raster/man/raster-package.Rd | 8 -
raster-1.9-63/raster/man/rasterTmpFile.Rd | 6 -
raster-1.9-63/raster/man/roundExtent.Rd | 40 ++++----
raster-1.9-63/raster/man/union.Rd |only
raster-1.9-63/raster/man/unionExtent.Rd | 13 +-
raster-1.9-63/raster/src/broom.c |only
raster-1.9-63/raster/src/focal_fun.c | 89 +++++++++----------
raster-1.9-63/raster/src/focal_sum.c | 129 +++++++++++++++-------------
77 files changed, 489 insertions(+), 419 deletions(-)
Title: Draw Geographical Maps
Diff between maps versions 2.2-4 dated 2012-01-12 and 2.2-5 dated 2012-01-15
Description: Display of maps. Projection code and larger maps are in
separate packages (mapproj and mapdata).
Author: Original S code by Richard A. Becker and Allan R. Wilks. R
version by Ray Brownrigg
Maintainer: Ray Brownrigg
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/map.r | 6 +++---
man/map.Rd | 10 +++++-----
src/county.gon | 2 +-
5 files changed, 17 insertions(+), 17 deletions(-)
Title: mRm: An R package for conditional maximum likelihood estimation
in mixed Rasch models.
Diff between mRm versions 1.0 dated 2011-05-26 and 1.1.1 dated 2012-01-15
Description: Conditional maximum likelihood estimation via the EM
algorithm and information-criterion-based model selection in
binary mixed Rasch models.
Author: David Preinerstorfer
Maintainer: David Preinerstorfer
DESCRIPTION | 8 ++--
MD5 |only
R/mrm.R | 94 +++++++++++++++++++++++++----------------------------
R/zzz.R | 31 ++++++++---------
man/mRm-package.Rd | 12 +++---
src/em.cpp | 3 +
src/error.h | 37 +++++++++++++++++---
7 files changed, 104 insertions(+), 81 deletions(-)
Title: memory-efficient storage of large data on disk and fast access
functions
Diff between ff versions 2.2-3 dated 2011-07-25 and 2.2-4 dated 2012-01-15
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by
transparently mapping only a section (pagesize) in main memory
- the effective virtual memory consumption per ff object. ff
supports R's standard atomic data types 'double', 'logical',
'raw' and 'integer' and non-standard atomic types boolean (1
bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1
byte signed with NAs), ubyte (1 byte unsigned), short (2 byte
signed with NAs), ushort (2 byte unsigned), single (4 byte
float with NAs). For example 'quad' allows efficient storage of
genomic data as an 'A','T','G','C' factor. The unsigned types
support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date'
and custom close-to-atomic types. ff not only has native
C-support for vectors, matrices and arrays with flexible
dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf class not
unlike data.frames and import/export filters for csv files. ff
objects store raw data in binary flat files in native encoding,
and complement this with metadata stored in R as physical and
virtual attributes. ff objects have well-defined hybrid copying
semantics, which gives rise to certain performance improvements
through virtualization. ff objects can be stored and reopened
across R sessions. ff files can be shared by multiple ff R
objects (using different data en/de-coding schemes) in the same
process or from multiple R processes to exploit parallelism. A
wide choice of finalizer options allows to work with
'permanent' files as well as creating/removing 'temporary' ff
files completely transparent to the user. On certain
OS/Filesystem combinations, creating the ff files works without
notable delay thanks to using sparse file allocation. Several
access optimization techniques such as Hybrid Index
Preprocessing and Virtualization are implemented to achieve
good performance even with large datasets, for example virtual
matrix transpose without touching a single byte on disk.
Further, to reduce disk I/O, 'logicals' and non-standard data
types get stored native and compact on binary flat files i.e.
logicals take up exactly 2 bits to represent TRUE, FALSE and
NA. Beyond basic access functions, the ff package also
provides compatibility functions that facilitate writing code
for ff and ram objects and support for batch processing on ff
objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely
with functionality from package 'bit': chunked looping, fast
bit operations and coercions between different objects that can
store subscript information ('bit', 'bitwhich', ff 'boolean',
ri range index, hi hybrid index). This allows to work
interactively with selections of large datasets and quickly
modify selection criteria. Further high-performance
enhancements can be made available upon request.
Author: Daniel Adler
Maintainer: Jens Oehlschl\xE4gel
DESCRIPTION | 29 +++++++++++++++--------------
MD5 |only
NEWS | 6 +++++-
R/ff.R | 4 ++--
R/ffbit.R | 4 ++--
R/ffdf.R | 4 ++--
R/hi.R | 4 ++--
man/as.ff.bit.rd | 4 ++--
man/clone.ffdf.rd | 2 +-
man/hi.rd | 4 ++--
man/length.ffdf.rd | 2 +-
man/update.ff.rd | 4 ++--
src/ordermerge.c | 4 ++--
13 files changed, 38 insertions(+), 33 deletions(-)
Title: A class for vectors of 1-bit booleans
Diff between bit versions 1.1-7 dated 2011-04-24 and 1.1-8 dated 2012-01-15
Description: bitmapped vectors of booleans (no NAs), coercion from and
to logicals, integers and integer subscripts; fast boolean
operators and fast summary statistics. With 'bit' vectors you
can store true binary booleans {FALSE,TRUE} at the expense of 1
bit only, on a 32 bit architecture this means factor 32 less
RAM and ~ factor 32 more speed on boolean operations. Due to
overhead of R calls, actual speed gain depends on the size of
the vector: expect gains for vectors of size > 10000 elements.
Even for one-time boolean operations it can pay-off to convert
to bit, the pay-off is obvious, when such components are used
more than once. Reading from and writing to bit is
approximately as fast as accessing standard logicals - mostly
due to R's time for memory allocation. The package allows to
work with pre-allocated memory for return values by calling
.Call() directly: when evaluating the speed of C-access with
pre-allocated vector memory, coping from bit to logical
requires only 70% of the time for copying from logical to
logical; and copying from logical to bit comes at a performance
penalty of 150%. the package now contains further classes for
representing logical selections: 'bitwhich' for very skewed
selections and 'ri' for selecting ranges of values for chunked
processing. All three index classes can be used for subsetting
'ff' objects (ff-2.1-0 and higher).
Author: Jens Oehlschl\xE4gel
Maintainer: Jens Oehlschl\xE4gel
DESCRIPTION | 13 +++++++------
MD5 |only
NAMESPACE | 3 +--
R/chunkutil.R | 3 +--
R/rle.R | 4 ++--
R/zzz.R | 18 +++++++++---------
man/rlepack.rd | 4 ++--
7 files changed, 22 insertions(+), 23 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.1-17 dated 2012-01-07 and 0.2-1 dated 2012-01-15
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries.
Author: Roger Bivand and Colin Rundel
Maintainer: Roger Bivand
rgeos-0.1-17/rgeos/inst/tests/test-translate.R |only
rgeos-0.1-17/rgeos/src/gpc_geos.c |only
rgeos-0.2-1/rgeos/ChangeLog | 141 ++++
rgeos-0.2-1/rgeos/DESCRIPTION | 12
rgeos-0.2-1/rgeos/MD5 | 43 -
rgeos-0.2-1/rgeos/inst/ChangeLog | 141 ++++
rgeos-0.2-1/rgeos/inst/SVN_VERSION | 2
rgeos-0.2-1/rgeos/inst/tests/process_testxml.R |only
rgeos-0.2-1/rgeos/inst/tests/test-jts-xml.R | 144 ----
rgeos-0.2-1/rgeos/inst/tests/test-translate-lines.R |only
rgeos-0.2-1/rgeos/inst/tests/test-translate-points.R |only
rgeos-0.2-1/rgeos/inst/tests/test-translate-polygon-collection.R |only
rgeos-0.2-1/rgeos/inst/tests/test-translate-polygons.R |only
rgeos-0.2-1/rgeos/inst/tests/test-translate-rings.R |only
rgeos-0.2-1/rgeos/src/init.c | 1
rgeos-0.2-1/rgeos/src/rgeos.h | 33
rgeos-0.2-1/rgeos/src/rgeos_R2geos.c | 268 +------
rgeos-0.2-1/rgeos/src/rgeos_R2geosMP.c |only
rgeos-0.2-1/rgeos/src/rgeos_bbox.c | 63 -
rgeos-0.2-1/rgeos/src/rgeos_coord.c | 4
rgeos-0.2-1/rgeos/src/rgeos_geos2R.c | 343 +++++-----
rgeos-0.2-1/rgeos/src/rgeos_poly2nb.c | 1
rgeos-0.2-1/rgeos/src/rgeos_predicate_binary.c | 126 +--
rgeos-0.2-1/rgeos/src/rgeos_predicate_unary.c | 69 --
rgeos-0.2-1/rgeos/src/rgeos_topology.c | 65 -
rgeos-0.2-1/rgeos/src/rgeos_topology_binary.c | 26
rgeos-0.2-1/rgeos/src/rgeos_validate.c | 5
27 files changed, 737 insertions(+), 750 deletions(-)
Title: Tools for reading and handling spatial objects
Diff between maptools versions 0.8-12 dated 2011-12-19 and 0.8-14 dated 2012-01-15
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Jonathan Callahan, Stéphane Dray, David Forrest, Michael
Friendly, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez
Rubio, Patrick Hausmann, Karl Ove Hufthammer, Thomas Jagger,
Sebastian P. Luque, Don MacQueen, Andrew Niccolai, Tom Short,
Greg Snow, Ben Stabler and Rolf Turner
Maintainer: Roger Bivand
ChangeLog | 18 +++++++++++++
DESCRIPTION | 23 ++++++++++++-----
MD5 | 16 ++++++++---
NAMESPACE | 2 -
R/kmlPoints.R |only
data/SplashDams.rda |only
data/state.vbm.rda |only
inst/ChangeLog | 18 +++++++++++++
man/SplashDams.Rd |only
man/kmlPoints.Rd |only
man/state.vbm.Rd |only
maptools-Ex.R | 70 ++++++++++++++++++++++++++++++++++++++++++++++++++++
12 files changed, 135 insertions(+), 12 deletions(-)
Title: Clustering for Business Analytics
Diff between cba versions 0.2-8 dated 2011-09-14 and 0.2-9 dated 2012-01-15
Description: Implements clustering techniques such as Proximus and
Rock, utility functions for efficient computation of cross
distances and data manipulation.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta
CHANGELOG | 10 +++++-
DESCRIPTION | 8 ++--
MD5 | 26 +++++++--------
R/sdists.r | 74 ++++++++++++++++++++++++++++++++++-----------
R/sdists.util.R | 4 +-
data/Mushroom.rda |binary
data/Votes.rda |binary
data/townships.rda |binary
man/plot.sdists.graph.Rd | 12 +++++--
man/sdists.Rd | 8 +++-
man/sdists.center.Rd | 2 -
man/sdists.center.align.Rd | 2 -
man/sdists.trace.Rd | 21 ++++++++----
src/sdists.c | 17 +++++-----
14 files changed, 124 insertions(+), 60 deletions(-)
Title: Mining frequent sequences
Diff between arulesSequences versions 0.1-11 dated 2010-10-18 and 0.2-0 dated 2012-01-15
More information about arulesSequences at CRAN
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta
arulesSequences-0.1-11/arulesSequences/README |only
arulesSequences-0.1-11/arulesSequences/src_exec |only
arulesSequences-0.2-0/arulesSequences/CHANGELOG | 29 ++++++
arulesSequences-0.2-0/arulesSequences/COPYRIGHTS | 8 +
arulesSequences-0.2-0/arulesSequences/DESCRIPTION | 14 +--
arulesSequences-0.2-0/arulesSequences/MD5 |only
arulesSequences-0.2-0/arulesSequences/R/04parameter.R | 2
arulesSequences-0.2-0/arulesSequences/R/05read_write.R | 43 ++++++----
arulesSequences-0.2-0/arulesSequences/WINDOWS |only
arulesSequences-0.2-0/arulesSequences/cleanup |only
arulesSequences-0.2-0/arulesSequences/cleanup.win |only
arulesSequences-0.2-0/arulesSequences/configure | 36 ++++----
arulesSequences-0.2-0/arulesSequences/configure.win |only
arulesSequences-0.2-0/arulesSequences/data/zaki.rda |binary
arulesSequences-0.2-0/arulesSequences/man/SPcontrol-class.Rd | 10 +-
arulesSequences-0.2-0/arulesSequences/src/TPOSE |only
arulesSequences-0.2-0/arulesSequences/src/cSPADE |only
arulesSequences-0.2-0/arulesSequences/src/makebin.c | 10 +-
arulesSequences-0.2-0/arulesSequences/tests/makebin.R | 14 +--
arulesSequences-0.2-0/arulesSequences/tests/makebin.Rout.save | 21 ++--
arulesSequences-0.2-0/arulesSequences/tests/similarity.Rout.save | 7 -
arulesSequences-0.2-0/arulesSequences/tests/zaki.Rout.save | 18 +---
22 files changed, 134 insertions(+), 78 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-28 0.9
2010-09-23 0.08
2010-03-11 0.07
2008-09-03 0.04
2007-08-25 0.03
2007-05-11 0.02
Title: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Diff between xlsx versions 0.3.0 dated 2011-03-03 and 0.4.0 dated 2012-01-15
Description: Provide R functions to read/write/format Excel 2007 and
Excel 97/2000/XP/2003 file formats.
Author: Adrian A. Dragulescu
Maintainer: Adrian A. Dragulescu
xlsx-0.3.0/xlsx/inst/doc/docMethods.txt |only
xlsx-0.3.0/xlsx/inst/tests/test.comments.R |only
xlsx-0.3.0/xlsx/inst/tests/test.dataFormats.R |only
xlsx-0.3.0/xlsx/inst/tests/test.export.R |only
xlsx-0.3.0/xlsx/inst/tests/test.formats.R |only
xlsx-0.3.0/xlsx/inst/tests/test.lowlevel.R |only
xlsx-0.3.0/xlsx/inst/tests/test.otherEffects.R |only
xlsx-0.3.0/xlsx/inst/tests/test.picture.R |only
xlsx-0.3.0/xlsx/inst/tests/test.ranges.R |only
xlsx-0.3.0/xlsx/inst/tests/test.workbook.R |only
xlsx-0.4.0/xlsx/DESCRIPTION | 9
xlsx-0.4.0/xlsx/MD5 |only
xlsx-0.4.0/xlsx/NEWS | 45 +++
xlsx-0.4.0/xlsx/R/Alignment.R |only
xlsx-0.4.0/xlsx/R/Border.R |only
xlsx-0.4.0/xlsx/R/Cell.R | 1
xlsx-0.4.0/xlsx/R/CellProtection.R |only
xlsx-0.4.0/xlsx/R/CellStyle.R | 210 +++++++++++++----
xlsx-0.4.0/xlsx/R/DataFormat.R |only
xlsx-0.4.0/xlsx/R/Fill.R |only
xlsx-0.4.0/xlsx/R/Font.R | 31 +-
xlsx-0.4.0/xlsx/R/PrintSetup.R | 2
xlsx-0.4.0/xlsx/R/Workbook.R | 297 +------------------------
xlsx-0.4.0/xlsx/R/addDataFrame.R |only
xlsx-0.4.0/xlsx/R/otherEffects.R | 59 ++++
xlsx-0.4.0/xlsx/R/read.xlsx.R | 2
xlsx-0.4.0/xlsx/R/read.xlsx2.R | 66 ++---
xlsx-0.4.0/xlsx/R/readColumns.R |only
xlsx-0.4.0/xlsx/R/utilities.R | 182 ++++++++-------
xlsx-0.4.0/xlsx/R/write.xlsx.R | 42 +--
xlsx-0.4.0/xlsx/R/write.xlsx2.R | 46 ---
xlsx-0.4.0/xlsx/inst/doc/xlsx.pdf |binary
xlsx-0.4.0/xlsx/inst/java/RInterface.jar |binary
xlsx-0.4.0/xlsx/inst/tests/crash_write_xlsx.R |only
xlsx-0.4.0/xlsx/inst/tests/lib_tests_xlsx.R |only
xlsx-0.4.0/xlsx/inst/tests/test.import.R | 4
xlsx-0.4.0/xlsx/inst/tests/test_import.xls |binary
xlsx-0.4.0/xlsx/inst/tests/test_import.xlsx |binary
xlsx-0.4.0/xlsx/man/Alignment.Rd |only
xlsx-0.4.0/xlsx/man/Border.Rd |only
xlsx-0.4.0/xlsx/man/Cell.Rd | 6
xlsx-0.4.0/xlsx/man/CellProtection.Rd |only
xlsx-0.4.0/xlsx/man/CellStyle-plus.Rd |only
xlsx-0.4.0/xlsx/man/CellStyle.Rd | 88 ++-----
xlsx-0.4.0/xlsx/man/DataFormat.Rd |only
xlsx-0.4.0/xlsx/man/Fill.Rd |only
xlsx-0.4.0/xlsx/man/Font.Rd | 43 ++-
xlsx-0.4.0/xlsx/man/OtherEffects.Rd | 53 ++--
xlsx-0.4.0/xlsx/man/POI_constants.Rd |only
xlsx-0.4.0/xlsx/man/Sheet.Rd | 4
xlsx-0.4.0/xlsx/man/addDataFrame.Rd |only
xlsx-0.4.0/xlsx/man/addHyperlink.Rd |only
xlsx-0.4.0/xlsx/man/read.xlsx.Rd | 29 +-
xlsx-0.4.0/xlsx/man/readColumns.Rd |only
xlsx-0.4.0/xlsx/man/write.xlsx.Rd | 25 +-
xlsx-0.4.0/xlsx/man/xlsx-package.Rd | 16 -
xlsx-0.4.0/xlsx/other/RInterface.java | 74 +++++-
xlsx-0.4.0/xlsx/other/TestRInterface.java | 47 ++-
xlsx-0.4.0/xlsx/other/make.package.R | 46 ++-
59 files changed, 714 insertions(+), 713 deletions(-)
Title: toolbox for WELL random number generators.
Diff between rngWELL versions 0.9 dated 2009-12-11 and 0.10-0 dated 2012-01-15
Description: It is a dedicated package to WELL pseudo random
generators. But it is not intended to use it directly, you are
strongly __encouraged__ to directly use the 'randtoolbox'
package, which depends on this package.
Author: C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R port
by Christophe Dutang and Petr Savicky
Maintainer: Christophe Dutang
DESCRIPTION | 10 +---
MD5 |only
inst/CITATION | 8 +--
inst/NEWS | 4 +
src/Makevars | 1
src/WELL19937a.c | 2
src/WELL19937b.c | 2
src/WELL21701a.c | 2
src/WELL23209a.c | 2
src/WELL23209b.c | 2
src/WELL44497a.c | 2
src/WELL521a.c | 2
src/WELL521b.c | 2
src/WELL607a.c | 2
src/WELL607b.c | 2
src/WELL800a.c | 2
src/WELL800b.c | 2
src/runifInterface.c | 112 +++++++++++++++++----------------------------------
src/version.c | 2
19 files changed, 62 insertions(+), 99 deletions(-)
Title: Multitaper Spectral Analysis
Diff between multitaper versions 0.1-2 dated 2010-08-23 and 0.1-3 dated 2012-01-15
Description: Generates Discrete Prolate Spheroidal Sequences and
provides functions to perform general multitaper spectral
analysis.
Author: Karim Rahim
Maintainer: Karim Rahim
DESCRIPTION | 8 ++++----
MD5 |only
man/centre.Rd | 2 +-
man/spec.mtm.Rd | 7 +++++--
4 files changed, 10 insertions(+), 7 deletions(-)
Title: L-moments and quantile mixtures
Diff between Lmoments versions 1.1-4 dated 2011-01-19 and 1.1-5 dated 2012-01-15
Description: The Lmoments package contains functions to estimate
L-moments and trimmed L-moments from the data. The package also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Author: Juha Karvanen
Maintainer: Juha Karvanen
DESCRIPTION | 9 ++++-----
MD5 |only
NAMESPACE |only
man/Lmoments.Rd | 4 ++--
man/cauchypoly.Rd | 4 ++--
man/covnormpoly4.Rd | 4 ++--
man/data2cauchypoly.Rd | 4 ++--
man/data2normpoly.Rd | 4 ++--
man/normpoly.Rd | 4 ++--
man/t1lmoments.Rd | 4 ++--
10 files changed, 18 insertions(+), 19 deletions(-)
Title: Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
Diff between LEAPFrOG versions 1.0 dated 2011-11-12 and 1.0.1 dated 2012-01-15
Description: Contains LEAPFrOG Gradient Optimisation and Expectation
Maximisation functions for inferring parental admixture
proportions from an offspring with SNP genotypes.
Author: Daniel JM Crouch & Michael E Weale
Maintainer: Daniel JM Crouch
DESCRIPTION | 10 ++++++----
LEAPFrOG.zip |binary
MD5 | 9 +++++----
NAMESPACE |only
R/LEAPFrOG.R | 3 ++-
man/constrOptim2.Rd | 7 +++++--
6 files changed, 18 insertions(+), 11 deletions(-)
Title: Estimation of various latent class mixed models and joint latent
class mixed models
Diff between lcmm versions 1.4-1 dated 2011-07-07 and 1.4-3 dated 2012-01-15
Description: This package provides functions for the estimation of
various latent class mixed models and joint latent latent class
mixed models using a maximum likelihood method
Author: Cecile Proust-Lima, Amadou Diakite and Benoit Liquet
Maintainer:
DESCRIPTION | 8
MD5 |only
R/Jointlcmm.R | 35
man/lcmm-package.Rd | 106
man/lcmm.Rd | 8
man/plot.baselinerisk.Rd | 113
man/plot.linkfunction.Rd | 181 -
man/plot.survival.Rd | 115
man/postprob.Rd | 86
src/Jointhet.f90 | 7883 +++++++++++++++++++++++------------------------
src/hetmixCont.f90 | 5918 +++++++++++++++++------------------
11 files changed, 7220 insertions(+), 7233 deletions(-)
Title: Stochastic Frontier Analysis
Diff between frontier versions 0.997-4 dated 2011-12-30 and 0.997-6 dated 2012-01-15
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Author: Tim Coelli, Arne Henningsen
Maintainer: Arne Henningsen
DESCRIPTION | 21 ++++++++++-----------
MD5 | 6 +++---
NEWS | 6 ++++++
man/efficiencies.frontier.Rd | 16 ++++++++++++----
4 files changed, 31 insertions(+), 18 deletions(-)
Title: Functions for extreme value distributions
Diff between evd versions 2.2-4 dated 2008-07-17 and 2.2-5 dated 2012-01-15
Description: Extends simulation, distribution, quantile and density
functions to univariate and multivariate parametric extreme
value distributions, and provides fitting functions which
calculate maximum likelihood estimates for univariate and
bivariate maxima models, and for univariate and bivariate
threshold models.
Author: Alec Stephenson. Function fbvpot by Chris Ferro.
Maintainer: Alec Stephenson
evd-2.2-4/evd/data/failure.R |only
evd-2.2-4/evd/data/fox.R |only
evd-2.2-4/evd/data/lisbon.R |only
evd-2.2-4/evd/data/lossalae.R |only
evd-2.2-4/evd/data/ocmulgee.R |only
evd-2.2-4/evd/data/oldage.R |only
evd-2.2-4/evd/data/oxford.R |only
evd-2.2-4/evd/data/portpirie.R |only
evd-2.2-4/evd/data/sask.R |only
evd-2.2-4/evd/data/sealevel.R |only
evd-2.2-4/evd/data/sealevel2.R |only
evd-2.2-4/evd/data/uccle.R |only
evd-2.2-4/evd/data/venice.R |only
evd-2.2-4/evd/inst/doc/guide22.tex |only
evd-2.2-5/evd/DESCRIPTION | 22 ++++++++++++----------
evd-2.2-5/evd/MD5 |only
evd-2.2-5/evd/NAMESPACE |only
evd-2.2-5/evd/R/profile.R | 2 +-
evd-2.2-5/evd/data/failure.rda |only
evd-2.2-5/evd/data/fox.rda |only
evd-2.2-5/evd/data/lisbon.rda |only
evd-2.2-5/evd/data/lossalae.rda |only
evd-2.2-5/evd/data/ocmulgee.rda |only
evd-2.2-5/evd/data/oldage.rda |only
evd-2.2-5/evd/data/oxford.rda |only
evd-2.2-5/evd/data/portpirie.rda |only
evd-2.2-5/evd/data/sask.rda |only
evd-2.2-5/evd/data/sealevel.rda |only
evd-2.2-5/evd/data/sealevel2.rda |only
evd-2.2-5/evd/data/uccle.rda |only
evd-2.2-5/evd/data/venice.rda |only
evd-2.2-5/evd/inst/CHANGES | 16 +++++++++++++++-
evd-2.2-5/evd/inst/doc/guide22.txt |only
33 files changed, 28 insertions(+), 12 deletions(-)
Title: CircNNTSR: An R package for the statistical analysis of circular
data using nonnegative trigonometric sums (NNTS) models
Diff between CircNNTSR versions 1.0-1 dated 2010-11-03 and 2.0 dated 2012-01-15
Description: Functions for the analysis of circular data using
distributions based on Nonnegative Trigonometric Sums (NNTS).
Functions for calculation of densities and distributions, the
estimation of parameters, plotting and more
Author: Juan Jose Fernandez-Duran and Maria Mercedes Gregorio-Dominguez
Maintainer: Maria Mercedes Gregorio-Dominguez
CrearCircNNTSR20.RData |only
DESCRIPTION | 8 -
MD5 |only
NAMESPACE |only
R/mnntsdensity.R |only
R/mnntsdensity2d.R |only
R/mnntsloglik.R |only
R/mnntsmanifoldnewtonestimation.R |only
R/mnntsmarginal.R |only
R/mnntsplot.R |only
R/mnntsplotmarginal.R |only
R/mnntsplotwithmarginals.R |only
R/mnntsrandominitial.R |only
R/nntsABDensitySymmetric.R | 26 ++--
R/nntsABcoefficientsSymmetric.R | 29 ++---
R/nntsDistributioninterval0to1.R | 40 +++---
R/nntsDistributioninterval0to2pi.R | 28 ++--
R/nntsSymmetricDensity.R | 55 +++++----
R/nntsestimationSymmetric.R | 3
R/nntsloglikInterval0to2pi.R | 14 +-
R/nntsloglikSymmetric.R | 32 +++--
R/nntsmanifoldnewtonestimation.R | 17 ++
R/nntsmanifoldnewtonestimationinterval0to2pi.R | 126 ++++++++++++----------
R/nntsplot.R | 2
R/nntsplotSymmetric.R | 40 ++++--
R/nntsrandominitialSymmetric.R | 18 +--
R/snntsdensity.R |only
R/snntsdensityplot.R |only
R/snntsloglik.R |only
R/snntsmanifoldnewtonestimation.R |only
R/snntsmarginallatitude.R |only
R/snntsmarginallongitude.R |only
R/trans3d.R |only
data/Datab3fisher.rda |only
data/Datab3fisher_ready.rda |only
data/Datab6fisher.rda |only
data/Datab6fisher_ready.rda |only
data/Nest.rda |only
man/Ants.Rd | 7 -
man/Ants_radians.Rd | 11 +
man/CircNNTSR-package.Rd | 74 +++++++-----
man/Datab3fisher.rd |only
man/Datab3fisher_ready.rd |only
man/Nest.Rd |only
man/Turtles.Rd | 4
man/Turtles_radians.Rd | 4
man/datab6fisher.rd |only
man/datab6fisher_ready.rd |only
man/mnntsdensity.Rd |only
man/mnntsdensity2d.Rd |only
man/mnntsloglik.Rd |only
man/mnntsmanifoldnewtonestimation.Rd |only
man/mnntsmarginal.Rd |only
man/mnntsplot.Rd |only
man/mnntsplotmarginal.Rd |only
man/mnntsplotwithmarginals.Rd |only
man/mnntsrandominitial.Rd |only
man/nntsABDensity.Rd | 22 +--
man/nntsABDensitySymmetric.Rd | 29 ++---
man/nntsABcoefficients.Rd | 37 +++---
man/nntsABcoefficientsSymmetric.Rd | 32 ++---
man/nntsDensityInterval0to1.Rd | 28 ++--
man/nntsDistribution.Rd | 18 +--
man/nntsDistributioninterval0to1.Rd | 20 +--
man/nntsDistributioninterval0to2pi.Rd | 22 +--
man/nntsSymmetricDensity.Rd | 14 +-
man/nntsdensity.Rd | 20 +--
man/nntsestimationSymmetric.Rd | 7 -
man/nntsloglik.Rd | 18 +--
man/nntsloglikInterval0to1.Rd | 29 ++---
man/nntsloglikInterval0to2pi.Rd | 28 ++--
man/nntsloglikSymmetric.Rd | 14 +-
man/nntsmanifoldnewtonestimation.Rd | 23 +---
man/nntsmanifoldnewtonestimationinterval0to1.Rd | 65 ++++++-----
man/nntsmanifoldnewtonestimationinterval0to2pi.Rd | 52 ++++-----
man/nntsplot.Rd | 26 ++--
man/nntsplotInterval0to1.Rd | 28 ++--
man/nntsplotSymmetric.Rd | 12 +-
man/nntsrandominitial.Rd | 22 +--
man/nntsrandominitialSymmetric.Rd | 26 ++--
man/snntsdensity.Rd |only
man/snntsdensityplot.Rd |only
man/snntsloglik.Rd |only
man/snntsmanifoldnewtonestimation.Rd |only
man/snntsmarginallatitude.Rd |only
man/snntsmarginallongitude.Rd |only
man/trans3d.Rd |only
87 files changed, 597 insertions(+), 533 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 5.11-06 dated 2012-01-13 and 5.12-04 dated 2012-01-15
Description: Misc functions for training and plotting classification
and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Maintainer: Max Kuhn
DESCRIPTION | 10 ++++----
MD5 | 50 ++++++++++++++++++++++----------------------
NAMESPACE | 3 ++
R/createGrid.R | 2 -
R/createModel.R | 4 +--
R/misc.R | 2 -
R/modelLookup.R | 26 +++++++++++++++++-----
R/preProcess.R | 2 +
R/predictionFunction.R | 2 -
R/probFunction.R | 2 -
R/selection.R | 2 -
R/train.default.R | 4 +++
R/workflows.R | 1
inst/NEWS | 22 +++++++++++++++++++
inst/doc/allPred.pdf |binary
inst/doc/caretMisc.pdf |binary
inst/doc/caretSelection.pdf |binary
inst/doc/caretTrain.pdf |binary
inst/doc/caretVarImp.pdf |binary
inst/doc/compact.Rout | 2 -
inst/doc/filteredPred.pdf |binary
inst/doc/min.pdf |binary
inst/doc/speedup.pdf |binary
inst/modelKey.txt | 2 -
man/preProcess.Rd | 2 -
man/train.Rd | 3 +-
26 files changed, 94 insertions(+), 47 deletions(-)