More information about endorse at CRAN
Path: /cran/new | permanent link
Title: R/GNU Linear Programming Kit Interface
Diff between Rglpk versions 0.3-7 dated 2012-01-12 and 0.3-8 dated 2012-01-16
More information about Rglpk at CRAN
Description: R interface to the GNU Linear Programing Kit (GLPK version
4.47 is shipped with the source package). GLPK is open source
software for solving large-scale linear programming (LP), mixed
integer linear programming (MILP) and other related problems.
Author: Kurt Hornik [aut], Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
R/filereader.R | 4 ++--
src/Rglpk_read_file.c | 18 +++++++-----------
4 files changed, 19 insertions(+), 23 deletions(-)
Path: /cran/updated | permanent link
More information about NlsyLinks at CRAN
Path: /cran/new | permanent link
Title: Conditionally Specified Logistic Regression
Diff between cslogistic versions 0.1-1 dated 2005-06-22 and 0.1-2 dated 2012-01-16
More information about cslogistic at CRAN
Description: This package contains functions for likelihood and
posterior analysis of conditionally specified logistic
regression models. All calculus and simulation is done in
compiled FORTRAN.
Author: Alejandro Jara
Maintainer: Alejandro Jara
cslogistic-0.1-1/cslogistic/R/MleCslogistic.r |only
cslogistic-0.1-1/cslogistic/src/cslogistic_res.rc |only
cslogistic-0.1-2/cslogistic/DESCRIPTION | 34 +-
cslogistic-0.1-2/cslogistic/MD5 |only
cslogistic-0.1-2/cslogistic/NAMESPACE | 3
cslogistic-0.1-2/cslogistic/R/BayesCslogistic.R | 320 ++++++++++-----------
cslogistic-0.1-2/cslogistic/R/MleCslogistic.R |only
cslogistic-0.1-2/cslogistic/R/cslogistic.R | 18 -
cslogistic-0.1-2/cslogistic/R/hidden.R | 107 +++----
cslogistic-0.1-2/cslogistic/man/BayesCslogistic.Rd | 68 ++--
cslogistic-0.1-2/cslogistic/man/MleCslogistic.Rd | 57 +--
cslogistic-0.1-2/cslogistic/src/Makevars |only
cslogistic-0.1-2/cslogistic/src/cslogistic.f | 30 +
13 files changed, 339 insertions(+), 298 deletions(-)
Path: /cran/updated | permanent link
Title: Functions to access vegetation databases (Turboveg) and prepare
data for analysis
Diff between vegdata versions 0.5.3 dated 2012-01-12 and 0.5.4 dated 2012-01-16
More information about vegdata at CRAN
Description: Handling of vegetation data sets from Turboveg. Taxonomic
harmonization of datasets with the help of the German
taxonomical standard list "GermanSL".
Author: Florian Jansen
Maintainer: Florian Jansen
vegdata-0.5.3/vegdata/inst/doc/SweaveC.sty |only
vegdata-0.5.3/vegdata/inst/doc/ecol_let.bst |only
vegdata-0.5.3/vegdata/inst/doc/gVis.jpg |only
vegdata-0.5.3/vegdata/inst/doc/vegdata.bib |only
vegdata-0.5.3/vegdata/inst/doc/veronica.png |only
vegdata-0.5.3/vegdata/new |only
vegdata-0.5.4/vegdata/DESCRIPTION | 6 +-
vegdata-0.5.4/vegdata/MD5 | 31 +++++------
vegdata-0.5.4/vegdata/R/syntab.r | 10 ++-
vegdata-0.5.4/vegdata/R/tax.r | 74 +++++++++++++++++----------
vegdata-0.5.4/vegdata/data/elbaue.rda |binary
vegdata-0.5.4/vegdata/inst/ChangeLog | 11 +++-
vegdata-0.5.4/vegdata/inst/doc/vegdata.pdf |binary
vegdata-0.5.4/vegdata/man/syntab.Rd | 5 +
vegdata-0.5.4/vegdata/man/tax.Rd | 3 -
vegdata-0.5.4/vegdata/man/vegdata-package.Rd | 6 +-
vegdata-0.5.4/vegdata/vignettes |only
17 files changed, 93 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Title: Segmented relationships in regression models
Diff between segmented versions 0.2-8.2 dated 2011-07-05 and 0.2-8.3 dated 2012-01-16
More information about segmented at CRAN
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
NEWS | 6 ++++++
R/plot.segmented.R | 2 +-
R/seg.glm.fit.r | 9 +++++++++
R/seg.lm.fit.r | 9 +++++++++
R/segmented.glm.R | 12 ++++++++----
R/segmented.lm.R | 8 ++++++--
data/down.rda |binary
data/plant.rda |binary
data/stagnant.rda |binary
man/segmented-package.Rd | 4 ++--
13 files changed, 45 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Title: mixed-effects Cox models, sparse matrices, and modeling data
from large pedigrees
Diff between kinship versions 1.1.2 dated 2011-12-02 and 1.1.3 dated 2012-01-16
More information about kinship at CRAN
Description: coxme: general mixed-effects Cox models; kinship: routines
to create and manipulate n by n matrices that describe the
genetic relationships between n persons; pedigree: create and
plot pedigrees; bdsmatrix: a class of objects for sparse
block-diagonal matrices (which is how kinship matrices are
stored); gchol: generalized cholesky decompositions
Author: Beth Atkinson (atkinson@mayo.edu) for pedigree functions. Terry
Therneau (therneau@mayo.edu) for all other functions.
Maintainer: Jing hua Zhao
ChangeLog | 1 +
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
R/BDSmatrix_%_%.R | 2 +-
R/gchol.R | 2 +-
inst/doc/current.pdf |binary
inst/doc/kinship.pdf |binary
inst/doc/releasep.pdf |binary
8 files changed, 16 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Title: Documentation for packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse
Diff between distrDoc versions 2.3.1 dated 2011-02-15 and 2.3.3 dated 2012-01-16
More information about distrDoc at CRAN
Description: provides documentation in form of a common vignette to
packages distr, distrEx, distrMod, distrSim, distrTEst,
distrTeach, and distrEllipse
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Maintainer: Peter Ruckdeschel
distrDoc-2.3.1/distrDoc/inst/doc/BiasType.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/BiasType.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/Confint.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/Confint.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/Estimate.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/Estimate.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/EvaluationList.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/EvaluationList.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/NormType.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/NormType.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/ParamFamParameter.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/ParamFamParameter.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/ProbFamily.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/ProbFamily.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/RiskType.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/RiskType.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/Symmetry.eps |only
distrDoc-2.3.1/distrDoc/inst/doc/Symmetry.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/dataclass.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/dataclass.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/distribution.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/distribution.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/evaluation.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/evaluation.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/parameter.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/parameter.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/rspace.pdf |only
distrDoc-2.3.1/distrDoc/inst/doc/rspace.ps |only
distrDoc-2.3.1/distrDoc/inst/doc/svn-multi.sty |only
distrDoc-2.3.1/distrDoc/inst/doc/svnkw.sty |only
distrDoc-2.3.3/distrDoc/DESCRIPTION | 18 ++++++++---------
distrDoc-2.3.3/distrDoc/MD5 |only
distrDoc-2.3.3/distrDoc/NAMESPACE |only
distrDoc-2.3.3/distrDoc/R/distrDoc.R | 8 +++----
distrDoc-2.3.3/distrDoc/inst/doc/distr.Rnw | 6 ++---
distrDoc-2.3.3/distrDoc/inst/doc/distr.pdf |binary
distrDoc-2.3.3/distrDoc/vignettes |only
37 files changed, 16 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Title: Bayesian analysis for exponential random graph models
Diff between Bergm versions 2.0 dated 2011-11-25 and 2.1 dated 2012-01-16
More information about Bergm at CRAN
Description: Set of tools to analyse Bayesian exponential random graph
models
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo
DESCRIPTION | 13 ++++++------
MD5 | 23 +++++++++++----------
NAMESPACE |only
R/bergm.R | 15 +++++---------
R/bergm.output.R | 38 +++++++++++++++--------------------
R/bergmS.R | 8 ++-----
R/bergmS.output.R | 20 ++++++++++++------
man/Bergm-package.Rd | 14 +++++++------
man/bergm.Rd | 48 +++++++++++++++++++++------------------------
man/bergm.output.Rd | 3 --
man/bergmS.Rd | 54 ++++++++++++++++++++++++---------------------------
man/bergmS.output.Rd | 2 -
man/bgof.Rd | 13 +++++-------
13 files changed, 122 insertions(+), 129 deletions(-)
Path: /cran/updated | permanent link
More information about StressStrength at CRAN
Path: /cran/new | permanent link
Title: Recursive Partitioning
Diff between rpart versions 3.1-50 dated 2011-04-13 and 3.1-51 dated 2012-01-16
More information about rpart at CRAN
Description: Recursive partitioning and regression trees
Author: Terry M Therneau and Beth Atkinson
Maintainer: Brian Ripley
rpart-3.1-50/rpart/data/car.test.frame.csv.gz |only
rpart-3.1-50/rpart/data/kyphosis.tab.gz |only
rpart-3.1-50/rpart/data/solder.tab.gz |only
rpart-3.1-51/rpart/ChangeLog | 5 ++++-
rpart-3.1-51/rpart/DESCRIPTION | 13 +++++++------
rpart-3.1-51/rpart/MD5 |only
rpart-3.1-51/rpart/R/summary.rpart.s | 2 +-
rpart-3.1-51/rpart/R/zzz.R | 2 --
rpart-3.1-51/rpart/data/car.test.frame.csv |only
rpart-3.1-51/rpart/data/kyphosis.tab |only
rpart-3.1-51/rpart/data/solder.tab |only
rpart-3.1-51/rpart/man/plot.rpart.Rd | 2 +-
rpart-3.1-51/rpart/src/usersplit.c | 2 +-
13 files changed, 14 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Title: Generate PMML for various models
Diff between pmml versions 1.2.27 dated 2011-01-03 and 1.2.28 dated 2012-01-16
More information about pmml at CRAN
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models using XML in an application
independent way. Such models can then be shared with other
applications that support PMML (see
http://www.dmg.org/products.html). The generic pmml() function
takes an R model as its argument and returns the corresponding
PMML. Currently supported models for export include linear
regression (lm and glm), support vector machines (ksvm),
decision trees (rpart), neural networks (nnet, multinom),
association rules (arules), survival models (coxph, survreg),
random survival forests (randomSurvivalForest), and clusters
(kmeans, hclust).
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Maintainer: Graham Williams
DESCRIPTION | 29 +++++++++++++------------
MD5 |only
R/pmml.R | 64 ++++++++++----------------------------------------------
R/pmml.arules.R | 27 +++++++++++------------
R/pmml.lm.R | 14 ++++++++++--
inst |only
6 files changed, 52 insertions(+), 82 deletions(-)
Path: /cran/updated | permanent link
Title: Linear and Nonlinear Mixed Effects Models
Diff between nlme versions 3.1-102 dated 2011-07-23 and 3.1-103 dated 2012-01-16
More information about nlme at CRAN
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
Author: Jose Pinheiro (S version), Douglas Bates (up to 2007), Saikat
DebRoy (up to 2002), Deepayan Sarkar (up to 2005), the R Core
team.
Maintainer: R-core
ChangeLog | 8 ++++++++
DESCRIPTION | 16 +++++++++++-----
MD5 |only
3 files changed, 19 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Title: mRm: An R package for conditional maximum likelihood estimation
in mixed Rasch models.
Diff between mRm versions 1.1.1 dated 2012-01-15 and 1.1.2 dated 2012-01-16
More information about mRm at CRAN
Description: Conditional maximum likelihood estimation via the EM
algorithm and information-criterion-based model selection in
binary mixed Rasch models.
Author: David Preinerstorfer
Maintainer: David Preinerstorfer
mRm-1.1.1/mRm/src/distributions.h |only
mRm-1.1.1/mRm/src/rng.h |only
mRm-1.1.2/mRm/DESCRIPTION | 8 ++++----
mRm-1.1.2/mRm/MD5 | 12 +++++-------
mRm-1.1.2/mRm/R/zzz.R | 2 +-
mRm-1.1.2/mRm/src/em.cpp | 1 -
mRm-1.1.2/mRm/src/selcol.cpp | 5 -----
mRm-1.1.2/mRm/src/symfuncomplete.cpp | 1 -
8 files changed, 10 insertions(+), 19 deletions(-)
Path: /cran/updated | permanent link
More information about mgraph at CRAN
Path: /cran/new | permanent link
Title: Epidemiological calculator
Diff between epicalc versions 2.14.0.2 dated 2012-01-10 and 2.14.0.3 dated 2012-01-16
More information about epicalc at CRAN
Description: Functions making R easy for epidemiological calculation.
Author: Virasakdi Chongsuvivatwong
Maintainer: Virasakdi Chongsuvivatwong
DESCRIPTION | 8 +-
MD5 | 4 -
R/epicalc.R | 193 +++++++++++++++++++++++++++++++++---------------------------
3 files changed, 114 insertions(+), 91 deletions(-)
Path: /cran/updated | permanent link
Title: Collection of Functions for Processing, Visualizing and
Analyzing Cambial Activity and Wood Formation Monitoring Data
Diff between CAVIAR versions 1.3-0 dated 2011-01-05 and 1.4-1 dated 2012-01-16
More information about CAVIAR at CRAN
Description: Allows processing, visualisation and analysis of data
coming from cambial activity and wood formation monitoring
studies.
Author: Cyrille Rathgeber
Maintainer: Cyrille Rathgeber
CAVIAR-1.3-0/CAVIAR/data/AMA2006.csv |only
CAVIAR-1.3-0/CAVIAR/data/AMA2006.xls |only
CAVIAR-1.3-0/CAVIAR/xls |only
CAVIAR-1.4-1/CAVIAR/DESCRIPTION | 14
CAVIAR-1.4-1/CAVIAR/MD5 |only
CAVIAR-1.4-1/CAVIAR/NAMESPACE |only
CAVIAR-1.4-1/CAVIAR/R/averageRadialFiles.R | 44 -
CAVIAR-1.4-1/CAVIAR/R/computeBootstrapTest.R | 4
CAVIAR-1.4-1/CAVIAR/R/computeCriticalDates.R | 498 +++++++++++--------
CAVIAR-1.4-1/CAVIAR/R/computeRingCellNb.R | 18
CAVIAR-1.4-1/CAVIAR/R/fitGompertz.R | 11
CAVIAR-1.4-1/CAVIAR/R/plotWoodFormationCalendar.R | 101 ++-
CAVIAR-1.4-1/CAVIAR/R/plotWoodFormationDynamics.R | 17
CAVIAR-1.4-1/CAVIAR/R/readXLSCellCountTable.R | 49 +
CAVIAR-1.4-1/CAVIAR/R/standardiseCellCount.R |only
CAVIAR-1.4-1/CAVIAR/data/AMA2006.csv.gz |only
CAVIAR-1.4-1/CAVIAR/inst/CITATION | 27 -
CAVIAR-1.4-1/CAVIAR/inst/extdata |only
CAVIAR-1.4-1/CAVIAR/man/AMA2006.Rd | 16
CAVIAR-1.4-1/CAVIAR/man/CAVIAR-package.Rd | 17
CAVIAR-1.4-1/CAVIAR/man/averageRadialFiles.Rd | 12
CAVIAR-1.4-1/CAVIAR/man/computeBootstrapTest.Rd | 17
CAVIAR-1.4-1/CAVIAR/man/computeCriticalDates.Rd | 17
CAVIAR-1.4-1/CAVIAR/man/computeRingCellNb.Rd | 21
CAVIAR-1.4-1/CAVIAR/man/fitGompertz.Rd | 14
CAVIAR-1.4-1/CAVIAR/man/plotWoodFormationCalendar.Rd | 29 -
CAVIAR-1.4-1/CAVIAR/man/plotWoodFormationDynamics.Rd | 15
CAVIAR-1.4-1/CAVIAR/man/readXLSCellCountTable.Rd | 31 -
CAVIAR-1.4-1/CAVIAR/man/standardiseCellCount.Rd |only
29 files changed, 586 insertions(+), 386 deletions(-)
Path: /cran/updated | permanent link
Title: Bootstrap Functions (originally by Angelo Canty for S)
Diff between boot versions 1.3-3 dated 2011-11-02 and 1.3-4 dated 2012-01-16
More information about boot at CRAN
Description: functions and datasets for bootstrapping from the book
"Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
Author: S original
Maintainer: Brian Ripley
ChangeLog | 4 ++++
DESCRIPTION | 22 +++++++++++++---------
MD5 | 6 +++---
extra-tests/parallel.R | 4 ++--
4 files changed, 22 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Title: Soil Database Interface
Diff between soilDB versions 0.3-2 dated 2012-01-03 and 0.3-3 dated 2012-01-16
More information about soilDB at CRAN
Description: A collection of functions for reading data from USDA-NCSS
soil databases.
Author: D.E. Beaudette and J.M. Skovlin
Maintainer: D.E. Beaudette
DESCRIPTION | 18 ++--
MD5 | 43 ++++++---
NEWS | 9 ++
R/MUKEYS_by_ll_bbox.R | 37 ++++----
R/SDA_query.R | 123 +++++++++++++++-------------
R/fetchPedonPC.R |only
R/getHzErrorsPedonPC.R |only
R/get_colors_from_NASIS_db.R | 95 ++++++++++-----------
R/get_colors_from_pedon_db.R | 95 ++++++++++-----------
R/get_extended_data_from_NASIS_db.R | 111 +++++++++++++------------
R/get_extended_data_from_pedon_db.R | 113 +++++++++++++-------------
R/get_hz_data_from_NASIS_db.R | 45 +++++-----
R/get_hz_data_from_pedon_db.R | 72 ++++++++--------
R/get_site_data_from_NASIS_db.R | 57 ++++++-------
R/get_site_data_from_pedon_db.R | 7 -
R/get_veg_from_AK_Site.R | 39 ++++-----
R/get_veg_from_MT_veg_db.R |only
R/get_veg_other_from_MT_veg_db.R |only
R/get_veg_species_from_MT_veg_db.R |only
R/mapunit_geom_by_ll_bbox.R | 147 ++++++++++++++++------------------
R/mix_and_clean_colors.R | 40 ++++-----
man/SDA_query.Rd | 2
man/fetchPedonPC.Rd |only
man/get_veg_from_MT_veg_db.Rd |only
man/get_veg_other_from_MT_veg_db.Rd |only
man/get_veg_species_from_MT_veg_db.Rd |only
man/soilDB-package.Rd | 4
27 files changed, 539 insertions(+), 518 deletions(-)
Path: /cran/updated | permanent link
Title: Automatic Text Classification via Supervised Learning
Diff between RTextTools versions 1.3.4 dated 2012-01-11 and 1.3.5 dated 2012-01-16
More information about RTextTools at CRAN
Description: RTextTools is a machine learning package for automatic
text classification that makes it simple for novice users to
get started with machine learning, while allowing experienced
users to easily experiment with different settings and
algorithm combinations. The package includes nine algorithms
for ensemble classification (svm, slda, boosting, bagging,
random forests, glmnet, decision trees, neural networks,
maximum entropy), comprehensive analytics, and thorough
documentation.
Author: Timothy P. Jurka, Loren Collingwood, Amber E. Boydstun,
Emiliano Grossman, Wouter van Atteveldt
Maintainer: Timothy P. Jurka
ChangeLog | 10 ++++++++++
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
R/classify_model.R | 18 +++++++++---------
R/create_analytics.R | 10 +++++++++-
R/create_corpus.R | 6 +++++-
R/create_matrix.R | 13 ++++---------
inst/examples/saved_model_demo.R |only
man/create_corpus.Rd | 6 +++---
9 files changed, 52 insertions(+), 34 deletions(-)
Path: /cran/updated | permanent link
Title: MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis
Diff between MetaQC versions 0.1.6 dated 2011-10-18 and 0.1.8 dated 2012-01-16
More information about MetaQC at CRAN
Description: MetaQC implements our proposed quantitative quality
control measures: (1) internal homogeneity of co-expression
structure among studies (internal quality control; IQC); (2)
external consistency of co-expression structure correlating
with pathway database (external quality control; EQC); (3)
accuracy of differentially expressed gene detection (accuracy
quality control; AQCg) or pathway identification (AQCp); (4)
consistency of differential expression ranking in genes
(consistency quality control; CQCg) or pathways (CQCp). (See
the reference for detailed explanation.) For each quality
control index, the p-values from statistical hypothesis testing
are minus log transformed and PCA biplots were applied to
assist visualization and decision. Results generate systematic
suggestions to exclude problematic studies in microarray
meta-analysis and potentially can be extended to GWAS or other
types of genomic meta-analysis. The identified problematic
studies can be scrutinized to identify technical and biological
causes (e.g. sample size, platform, tissue collection,
preprocessing etc) of their bad quality or irreproducibility
for final inclustion/exclusion decision.
Author: Don Kang
Maintainer: Don Kang
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/MetaQC.R | 15 ++++++++-------
man/MetaQC-package.Rd | 8 ++++----
man/MetaQC.Rd | 2 +-
man/cleanup.Rd | 2 +-
man/plot.proto.Rd | 2 +-
man/print.proto.Rd | 2 +-
man/runQC.Rd | 2 +-
9 files changed, 29 insertions(+), 28 deletions(-)
Path: /cran/updated | permanent link
Title: Graph Based Multiple Comparison Procedures
Diff between gMCP versions 0.7-2 dated 2011-12-11 and 0.7-3 dated 2012-01-16
More information about gMCP at CRAN
Description: This package provides functions and a graphical user
interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller (parametric tests,
adaptive designs), Bjoern Bornkamp (power simulations)
Maintainer: Kornelius Rohmeyer
gMCP-0.7-2/gMCP/inst/java-src/org/af/gMCP/gui/ErrorDialogSGTK.java |only
gMCP-0.7-2/gMCP/man/subGraph.Rd |only
gMCP-0.7-3/gMCP/DESCRIPTION | 12
gMCP-0.7-3/gMCP/INSTALL | 2
gMCP-0.7-3/gMCP/MD5 | 84 ++---
gMCP-0.7-3/gMCP/NAMESPACE | 3
gMCP-0.7-3/gMCP/NEWS | 42 ++
gMCP-0.7-3/gMCP/R/convertFromOldClassDefinition.R | 3
gMCP-0.7-3/gMCP/R/exampleGraphs.R | 6
gMCP-0.7-3/gMCP/R/gMCP.R | 12
gMCP-0.7-3/gMCP/R/graphMCP.R | 2
gMCP-0.7-3/gMCP/R/misc.R | 1
gMCP-0.7-3/gMCP/R/modifyGraphs.R | 2
gMCP-0.7-3/gMCP/R/startGUIs.R | 5
gMCP-0.7-3/gMCP/R/subVariables.R | 10
gMCP-0.7-3/gMCP/TODO | 12
gMCP-0.7-3/gMCP/inst/doc/AQuickStart.pdf |binary
gMCP-0.7-3/gMCP/inst/doc/gMCP.pdf |binary
gMCP-0.7-3/gMCP/inst/doc/parametric.pdf |binary
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/config/GeneralConfig.java | 9
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/config/VersionComparator.java | 6
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java | 25 +
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/ErrorDialogGMCP.java |only
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/MenuBarMGraph.java | 26 -
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/RControl.java | 7
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/DialogConfIntEstVar.java | 2
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java | 168 +++++-----
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gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/EdgeWeight.java | 8
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/GraphView.java | 14
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/NetList.java | 5
gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/PView.java | 4
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gMCP-0.7-3/gMCP/inst/java-src/org/af/gMCP/gui/graph/UpdateNode.java | 1
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47 files changed, 362 insertions(+), 196 deletions(-)
Path: /cran/updated | permanent link
Title: methods of distance-based gene set functional enrichment
analysis.
Diff between DBGSA versions 1.1 dated 2011-05-17 and 1.2 dated 2012-01-16
More information about DBGSA at CRAN
Description: This package provides methods and examples to support a
method of Gene Set Analysis (GSA). DBGSA is a novel
distance-based gene set enrichment analysis method. We consider
that, the distance between 2 groups with different phenotype by
focusing on the gene expression should be larger, if a certain
gene functional set was significantly associated with a
particular phenotype.
Author: Li Jin, Huang Meilin
Maintainer: Li Jin
DBGSA-1.1/DBGSA/data/b1.txt |only
DBGSA-1.2/DBGSA/DESCRIPTION | 20 ++++++++++----------
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DBGSA-1.2/DBGSA/data/afExp.rda |binary
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DBGSA-1.2/DBGSA/data/datalist |only
DBGSA-1.2/DBGSA/data/distance.rda |binary
DBGSA-1.2/DBGSA/data/rand.rda |binary
10 files changed, 12 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link