Title: OpenCPU Demo apps.
Diff between opencpu.demo versions 0.4-1 dated 2012-01-13 and 0.4-7 dated 2012-01-18
Description: Some demo R functions and apps for the OpenCPU framework.
See http://www.opencpu.org for more details.
Author: Jeroen Ooms and others as specified in the manual page.
Maintainer: Jeroen Ooms
opencpu.demo-0.4-1/opencpu.demo/opencpu.demo-Ex.R |only
opencpu.demo-0.4-7/opencpu.demo/DESCRIPTION | 17 +-
opencpu.demo-0.4-7/opencpu.demo/MD5 | 23 +--
opencpu.demo-0.4-7/opencpu.demo/R/liveplot.R | 9 +
opencpu.demo-0.4-7/opencpu.demo/R/makefunction.R | 2
opencpu.demo-0.4-7/opencpu.demo/R/nabel.R | 59 +++++-----
opencpu.demo-0.4-7/opencpu.demo/R/testplothandlers.R | 5
opencpu.demo-0.4-7/opencpu.demo/inst/opencpu/apps/nabel/index.html | 32 ++---
opencpu.demo-0.4-7/opencpu.demo/inst/opencpu/apps/nabel/nabel.js | 4
opencpu.demo-0.4-7/opencpu.demo/man/liveplot.Rd | 7 +
opencpu.demo-0.4-7/opencpu.demo/man/makefunction.Rd | 2
opencpu.demo-0.4-7/opencpu.demo/man/nabel.Rd | 8 -
opencpu.demo-0.4-7/opencpu.demo/man/testplothandlers.Rd | 3
13 files changed, 97 insertions(+), 74 deletions(-)
Title: Interactive exploratory spatial data analysis
Diff between GeoXp versions 1.5.2 dated 2012-01-12 and 1.5.4 dated 2012-01-18
Description: GeoXp is a tool for researchers in spatial statistics,
spatial econometrics, geography, ecology etc allowing to link
dynamically statistical plots with elementary maps. This
coupling consists in the fact that the selection of a zone on
the map results in the automatic highlighting of the
corresponding points on the statistical graph or reversely the
selection of a portion of the graph results in the automatic
highlighting of the corresponding points on the map. GeoXp
includes tools from different areas of spatial statistics
including geostatistics as well as spatial econometrics and
point processes. Besides elementary plots like boxplots,
histograms or simple scatterplos, GeoXp also couples with maps
Moran scatterplots, variogram cloud, Lorentz Curves,...In order
to make the most of the multidimensionality of the data, GeoXp
includes some dimension reduction techniques such as PCA.
Author: Yves Aragon, Thibault Laurent, Lauriane Robidou, Anne
Ruiz-Gazen, Christine Thomas-Agnan
Maintainer: Thibault Laurent
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GeoXp-1.5.4/GeoXp/DESCRIPTION | 10 +++---
GeoXp-1.5.4/GeoXp/MD5 | 36 +++++++---------------
GeoXp-1.5.4/GeoXp/inst/doc/Thumbs.db |binary
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GeoXp-1.5.4/GeoXp/man/GeoXp-package.Rd | 4 +-
33 files changed, 22 insertions(+), 31 deletions(-)
Title: Brownian bridge movement model
Diff between BBMM versions 2.2 dated 2011-02-25 and 2.3 dated 2012-01-18
Description: The model provides an empirical estimate of a movement
path using discrete location data obtained at relatively short
time intervals.
Author: Nielson, R. M., H. Sawyer, and T. L. McDonald
Maintainer: Ryan Nielson
BBMM-2.2/BBMM/R/zzz.R |only
BBMM-2.2/BBMM/src |only
BBMM-2.3/BBMM/DESCRIPTION | 18 +++-----
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BBMM-2.3/BBMM/R/bbmm.contour.R | 17 ++++----
BBMM-2.3/BBMM/R/bbmm.summary.R | 1
BBMM-2.3/BBMM/R/brownian.bridge.R | 54 ++++++++++++++------------
BBMM-2.3/BBMM/R/brownian.motion.variance.R | 27 +++++++------
BBMM-2.3/BBMM/data/locations.rda |binary
BBMM-2.3/BBMM/man/BBMM-package.Rd | 4 -
BBMM-2.3/BBMM/man/bbmm.contour.Rd | 29 +++++++------
BBMM-2.3/BBMM/man/bbmm.summary.Rd | 2
BBMM-2.3/BBMM/man/brownian.bridge.Rd | 30 +++++++++-----
BBMM-2.3/BBMM/man/brownian.motion.variance.Rd | 18 +++-----
BBMM-2.3/BBMM/man/locations.Rd | 2
16 files changed, 107 insertions(+), 95 deletions(-)
Title: adegenet: an R package for the exploratory analysis of genetic
and genomic data.
Diff between adegenet versions 1.3-3 dated 2011-12-23 and 1.3-4 dated 2012-01-18
Description: Classes and functions for genetic data analysis within the
multivariate framework.
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
adegenet-1.3-3/adegenet/inst/doc/Robjects |only
adegenet-1.3-3/adegenet/inst/doc/ascore.pdf |only
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adegenet-1.3-4/adegenet/DESCRIPTION | 17 +-
adegenet-1.3-4/adegenet/MD5 | 106 +++++++-------
adegenet-1.3-4/adegenet/R/zzz.R | 4
adegenet-1.3-4/adegenet/data/datalist | 2
adegenet-1.3-4/adegenet/inst/CITATION | 13 +
adegenet-1.3-4/adegenet/inst/doc/adegenet-basics.pdf |binary
adegenet-1.3-4/adegenet/inst/doc/adegenet-dapc.pdf |binary
adegenet-1.3-4/adegenet/inst/doc/adegenet-genomics.pdf |binary
adegenet-1.3-4/adegenet/inst/doc/adegenet-spca.pdf |binary
adegenet-1.3-4/adegenet/man/HWE.Rd | 2
adegenet-1.3-4/adegenet/man/Hs.Rd | 2
adegenet-1.3-4/adegenet/man/adegenet.package.Rd | 2
adegenet-1.3-4/adegenet/man/as-methods.Rd | 2
adegenet-1.3-4/adegenet/man/chooseCN.Rd | 2
adegenet-1.3-4/adegenet/man/colorplot.Rd | 2
adegenet-1.3-4/adegenet/man/dapcIllus.Rd | 2
adegenet-1.3-4/adegenet/man/dist.genpop.Rd | 2
adegenet-1.3-4/adegenet/man/find.clusters.Rd | 4
adegenet-1.3-4/adegenet/man/genind.Rd | 2
adegenet-1.3-4/adegenet/man/genind2genpop.Rd | 10 -
adegenet-1.3-4/adegenet/man/genpop.Rd | 2
adegenet-1.3-4/adegenet/man/glPlot.Rd | 3
adegenet-1.3-4/adegenet/man/inbreeding.Rd | 3
adegenet-1.3-4/adegenet/man/isPoly.Rd | 2
adegenet-1.3-4/adegenet/man/makefreq.Rd | 2
adegenet-1.3-4/adegenet/man/na.replace.Rd | 2
adegenet-1.3-4/adegenet/man/propTyped.Rd | 2
adegenet-1.3-4/adegenet/man/read.PLINK.Rd | 3
adegenet-1.3-4/adegenet/man/repool.Rd | 2
adegenet-1.3-4/adegenet/man/scale.Rd | 2
adegenet-1.3-4/adegenet/man/selpopsize.Rd | 3
adegenet-1.3-4/adegenet/man/seqTrack.Rd | 2
adegenet-1.3-4/adegenet/man/sequences.Rd | 2
adegenet-1.3-4/adegenet/man/spca.Rd | 8 -
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51 files changed, 131 insertions(+), 81 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.7-7 dated 2012-01-18 and 0.7-8 dated 2012-01-18
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows binaries (including GDAL, PROJ.4 and Expat) are
provided on CRAN. Mac Intel OS X binaries (including GDAL,
PROJ.4 and Expat) are not provided on CRAN, but can be
installed from the CRAN Extras repository with:
setRepositories(ind=1:2); install.packages('rgdal').
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 8 ++++++++
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
inst/ChangeLog | 8 ++++++++
src/ogrsource.cpp | 2 +-
5 files changed, 24 insertions(+), 8 deletions(-)
Title: Random ferns classifier
Diff between rFerns versions 0.2 dated 2012-01-02 and 0.3 dated 2012-01-18
Description: An R implementation of the random ferns classifier by
Ozuysal et al., modified for generic classification problems
and featuring OOB error approximation and importance measure.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
DESCRIPTION | 10 ++++++----
MD5 | 8 ++++----
inst/NEWS | 4 ++++
src/fern.h | 24 ++++++++++++++----------
src/tools.h | 2 +-
5 files changed, 29 insertions(+), 19 deletions(-)
Title: Reads mass spectrometry data in Bruker *flex format
Diff between readBrukerFlexData versions 1.2.1 dated 2011-12-19 and 1.2.2 dated 2012-01-18
More information about readBrukerFlexData at CRAN
Description: Reads files generated by MALDI-TOF MS of Bruker Daltonics'
*flex series. Successfully tested for Bruker Daltonics'
Autoflex MS.
Author: Sebastian Gibb
Maintainer: Sebastian Gibb
DESCRIPTION | 13 +++++++------
MD5 | 8 ++++----
NEWS | 3 +++
R/readBrukerFlexData.R | 6 +++---
man/readBrukerFlexData-package.Rd | 4 ++--
5 files changed, 19 insertions(+), 15 deletions(-)
Permanent link
Title: Provides Tools For Demographic Modelling Using Projection
Matrices
Diff between popdemo versions 0.1-1 dated 2011-12-19 and 0.1-2 dated 2012-01-18
Description: popdemo provides a set of tools designed for modelling
population demography using population projection matrix (PPM)
models. The focus is mainly on indices of transient dynamics,
and the use of control theory (specifically transfer
functions). However, popdemo includes a number of tools
focussing on other areas of demographic modelling. Some tools
may prove useful to anyone working with projection matrix
models of any type, or indeed matrices in general. The package
is designed to build on those tools already available in
popbio.
Author: Iain Stott
Maintainer: Iain Stott
ChangeLog.txt |only
DESCRIPTION | 30 +++++++++++++++++-------------
MD5 | 11 ++++++-----
demo/convergence.R | 7 +++++++
demo/popdemo.R | 17 ++++++++---------
demo/transfer.R | 34 ++++++++++++++++++++--------------
man/popdemo-package.Rd | 2 +-
7 files changed, 59 insertions(+), 42 deletions(-)
Title: Quantitative analysis of MALDI-TOF MS data
Diff between MALDIquant versions 0.4 dated 2011-08-05 and 0.5 dated 2012-01-18
Description: Quantitative analysis of MALDI-TOF MS data This package
provide an easy framework for quantitative analysis of
MALDI-TOF mass spectrometry data. MALDIquant supports baseline
correction, peak detection and plotting of mass spectra.
Author: Sebastian Gibb
Maintainer: Sebastian Gibb
DESCRIPTION | 10 ++++-----
MD5 |only
NEWS | 6 ++++-
R/AllClasses.R | 4 +--
R/AllGenerics.R | 6 +++--
R/as.matrix-methods.R | 4 +--
R/calibrate-functions.R | 4 +--
R/constructor-functions.R | 4 +--
R/detectPeaks-methods.R | 4 +--
R/estimateBaseline-functions.R | 16 ++++-----------
R/estimateBaseline-methods.R | 4 +--
R/estimateNoise-methods.R | 4 +--
R/findEmptyMassObjects-functions.R | 4 +--
R/findLocalMaxima-methods.R | 9 ++++++--
R/imputeMass-methods.R |only
R/intensity-methods.R | 4 +--
R/intensityMatrix-functions.R | 27 +++++++++-----------------
R/isEmpty-methods.R | 4 +--
R/isMassObjectList-functions.R | 4 +--
R/labelPeaks-methods.R | 4 +--
R/length-methods.R | 4 +--
R/lines-methods.R | 4 +--
R/mass-methods.R | 4 +--
R/metaData-methods.R | 4 +--
R/plot-methods.R | 11 +++++-----
R/points-methods.R | 4 +--
R/removeBaseline-methods.R | 4 +--
R/removeEmptyMassObjects-functions.R | 2 -
R/replaceNonEmptyMassObjects-functions.R | 2 -
R/show-methods.R | 4 +--
R/transformIntensity-methods.R | 4 +--
R/valid-methods.R | 4 +--
R/which.nearby-functions.R | 4 +--
man/MALDIquant-package.Rd | 4 +--
man/MassSpectrum-class.Rd | 6 +++++
man/imputeMass-methods.Rd |only
man/pA1.Rd | 32 +++++++++++++++++++++++++++++++
man/plot-methods.Rd | 6 ++---
38 files changed, 131 insertions(+), 94 deletions(-)
Title: Graphical Independence Networks
Diff between gRain versions 0.8.10 dated 2011-12-30 and 0.8.12 dated 2012-01-18
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems (which includes Bayesian networks as a special case).
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
gRain-0.8.10/gRain/inst/doc/R-current.lnk |only
gRain-0.8.10/gRain/inst/doc/fig |only
gRain-0.8.10/gRain/inst/doc/gRain.bib |only
gRain-0.8.12/gRain/ChangeLog | 14 ++++++++++++++
gRain-0.8.12/gRain/DESCRIPTION | 14 ++++++++------
gRain-0.8.12/gRain/MD5 | 22 +++++++++++-----------
gRain-0.8.12/gRain/R/querygrain.R | 14 +++++++-------
gRain-0.8.12/gRain/inst/doc/gRain-intro.pdf |binary
gRain-0.8.12/gRain/man/querygrain.Rd | 4 ++--
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10 files changed, 42 insertions(+), 26 deletions(-)
Title: Clinical Trial Design and Data Analysis Functions
Diff between clinfun versions 0.9.8 dated 2011-09-14 and 0.9.9 dated 2012-01-18
Description: Utilities to make your clinical collaborations easier if
not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan
CHANGES | 5 +++++
DESCRIPTION | 6 +++---
INDEX | 1 +
MD5 | 12 +++++++-----
NAMESPACE | 2 +-
R/coxphERR.R |only
R/toxbdry.R | 2 +-
man/coxphERR.Rd |only
8 files changed, 18 insertions(+), 10 deletions(-)
Title: Tools for parsing and generating XML within R and S-Plus.
Diff between XML versions 3.8-0 dated 2012-01-14 and 3.9-0 dated 2012-01-18
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Maintainer: Duncan Temple Lang
Changes | 14 ++++++++++++++
DESCRIPTION | 6 +++---
INSTALL | 2 +-
MD5 | 26 +++++++++++++-------------
R/xmlInternalSource.R | 21 ++++++++++++---------
man/readHTMLTable.Rd | 4 +++-
man/xmlSource.Rd | 2 +-
src/DocParse.c | 49 +++++++++++++++++++++++++------------------------
src/EventParse.c | 18 +++++++++---------
src/ExpatParse.c | 2 +-
src/Utils.h | 5 ++++-
src/XMLEventParse.c | 28 ++++++++++++++--------------
src/XMLHashTree.c | 4 ++--
src/XMLTree.c | 23 +++++++++++------------
14 files changed, 113 insertions(+), 91 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.7-5 dated 2011-11-17 and 0.7-7 dated 2012-01-18
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows binaries (including GDAL, PROJ.4 and Expat) are
provided on CRAN. Mac Intel OS X binaries (including GDAL,
PROJ.4 and Expat) are not provided on CRAN, but can be
installed from the CRAN Extras repository with:
setRepositories(ind=1:2); install.packages('rgdal').
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 27 +++++++++++++
DESCRIPTION | 28 ++++++++++---
MD5 | 18 ++++----
NAMESPACE | 2
R/ogr.R | 9 ++++
R/project.R | 3 +
inst/ChangeLog | 27 +++++++++++++
man/readOGR.Rd | 3 +
src/Makevars.win | 2
src/ogrsource.cpp | 112 ++++++++++++++++++++++++++++++++++++++++++++++++------
10 files changed, 201 insertions(+), 30 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Diff between HSAUR2 versions 1.0-7 dated 2011-12-19 and 1.1-0 dated 2012-01-18
Description: Functions, data sets, analyses and examples from the
second edition of the book `A Handbook of Statistical Analyses
Using R' (Brian S. Everitt and Torsten Hothorn, Chapman &
Hall/CRC, 2008). The first chapter of the book, which is
entitled `An Introduction to R', is completely included in this
package, for all other chapters, a vignette containing all data
analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
HSAUR2-1.0-7/HSAUR2/HSAUR2-Ex.R |only
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HSAUR2-1.1-0/HSAUR2/data/roomwidth.rda |binary
HSAUR2-1.1-0/HSAUR2/data/schizophrenia.rda |binary
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HSAUR2-1.1-0/HSAUR2/data/smoking.rda |binary
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HSAUR2-1.1-0/HSAUR2/data/toothpaste.rda |binary
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HSAUR2-1.1-0/HSAUR2/data/weightgain.rda |binary
HSAUR2-1.1-0/HSAUR2/inst/CHANGES | 6
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_analysis_of_variance.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_cluster_analysis.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_conditional_inference.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_density_estimation.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_errata.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_gam.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_graphical_display.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_introduction_to_R.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_logistic_regression_glm.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_meta_analysis.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_multidimensional_scaling.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_multiple_linear_regression.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_principal_components_analysis.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_recursive_partitioning.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_simple_inference.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_simultaneous_inference.pdf |binary
HSAUR2-1.1-0/HSAUR2/inst/doc/Ch_survival_analysis.pdf |binary
HSAUR2-1.1-0/HSAUR2/vignettes |only
62 files changed, 118 insertions(+), 120 deletions(-)
Title: A Handbook of Statistical Analyses Using R
Diff between HSAUR versions 1.2-6 dated 2011-12-19 and 1.3-0 dated 2012-01-18
Description: Functions, data sets, analyses and examples from the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt
and Torsten Hothorn, Chapman & Hall/CRC, 2006). The first
chapter of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
HSAUR-1.2-6/HSAUR/inst/doc/LaTeXBibTeX |only
HSAUR-1.2-6/HSAUR/inst/doc/chapman.cls |only
HSAUR-1.2-6/HSAUR/inst/doc/graphics |only
HSAUR-1.2-6/HSAUR/inst/doc/longtable.sty |only
HSAUR-1.2-6/HSAUR/inst/doc/tables |only
HSAUR-1.2-6/HSAUR/tests |only
HSAUR-1.3-0/HSAUR/DESCRIPTION | 20
HSAUR-1.3-0/HSAUR/MD5 | 213 +++++-----
HSAUR-1.3-0/HSAUR/data/BCG.rda |binary
HSAUR-1.3-0/HSAUR/data/BtheB.rda |binary
HSAUR-1.3-0/HSAUR/data/CYGOB1.rda |binary
HSAUR-1.3-0/HSAUR/data/Lanza.rda |binary
HSAUR-1.3-0/HSAUR/data/aspirin.rda |binary
HSAUR-1.3-0/HSAUR/data/birthdeathrates.rda |binary
HSAUR-1.3-0/HSAUR/data/bladdercancer.rda |binary
HSAUR-1.3-0/HSAUR/data/epilepsy.rda |binary
HSAUR-1.3-0/HSAUR/data/foster.rda |binary
HSAUR-1.3-0/HSAUR/data/gardenflowers.rda |binary
HSAUR-1.3-0/HSAUR/data/heptathlon.rda |binary
HSAUR-1.3-0/HSAUR/data/mastectomy.rda |binary
HSAUR-1.3-0/HSAUR/data/meteo.rda |binary
HSAUR-1.3-0/HSAUR/data/orallesions.rda |binary
HSAUR-1.3-0/HSAUR/data/phosphate.rda |binary
HSAUR-1.3-0/HSAUR/data/pistonrings.rda |binary
HSAUR-1.3-0/HSAUR/data/planets.rda |binary
HSAUR-1.3-0/HSAUR/data/plasma.rda |binary
HSAUR-1.3-0/HSAUR/data/polyps.rda |binary
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HSAUR-1.3-0/HSAUR/data/rearrests.rda |binary
HSAUR-1.3-0/HSAUR/data/respiratory.rda |binary
HSAUR-1.3-0/HSAUR/data/roomwidth.rda |binary
HSAUR-1.3-0/HSAUR/data/schizophrenia.rda |binary
HSAUR-1.3-0/HSAUR/data/schizophrenia2.rda |binary
HSAUR-1.3-0/HSAUR/data/schooldays.rda |binary
HSAUR-1.3-0/HSAUR/data/smoking.rda |binary
HSAUR-1.3-0/HSAUR/data/students.rda |binary
HSAUR-1.3-0/HSAUR/data/suicides.rda |binary
HSAUR-1.3-0/HSAUR/data/toothpaste.rda |binary
HSAUR-1.3-0/HSAUR/data/voting.rda |binary
HSAUR-1.3-0/HSAUR/data/water.rda |binary
HSAUR-1.3-0/HSAUR/data/watervoles.rda |binary
HSAUR-1.3-0/HSAUR/data/waves.rda |binary
HSAUR-1.3-0/HSAUR/data/weightgain.rda |binary
HSAUR-1.3-0/HSAUR/data/womensrole.rda |binary
HSAUR-1.3-0/HSAUR/inst/CHANGES | 6
HSAUR-1.3-0/HSAUR/inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_analysis_of_variance.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_cluster_analysis.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_conditional_inference.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_density_estimation.Rnw | 2
HSAUR-1.3-0/HSAUR/inst/doc/Ch_density_estimation.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_errata.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_introduction_to_R.Rnw | 7
HSAUR-1.3-0/HSAUR/inst/doc/Ch_introduction_to_R.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_logistic_regression_glm.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_meta_analysis.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_multidimensional_scaling.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_multiple_linear_regression.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_principal_components_analysis.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_recursive_partitioning.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_simple_inference.pdf |binary
HSAUR-1.3-0/HSAUR/inst/doc/Ch_survival_analysis.pdf |binary
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65 files changed, 132 insertions(+), 116 deletions(-)
Title: Functions for extreme value distributions
Diff between evd versions 2.2-5 dated 2012-01-15 and 2.2-6 dated 2012-01-18
Description: Extends simulation, distribution, quantile and density
functions to univariate and multivariate parametric extreme
value distributions, and provides fitting functions which
calculate maximum likelihood estimates for univariate and
bivariate maxima models, and for univariate and bivariate
threshold models.
Author: Alec Stephenson. Function fbvpot by Chris Ferro.
Maintainer: Alec Stephenson
evd-2.2-5/evd/R/zzz.R |only
evd-2.2-6/evd/DESCRIPTION | 8 +++---
evd-2.2-6/evd/MD5 | 7 ++---
evd-2.2-6/evd/NAMESPACE | 57 ++++++++++++++++++++++++++++++++++++++-------
evd-2.2-6/evd/inst/CHANGES | 4 +++
5 files changed, 60 insertions(+), 16 deletions(-)
Title: doBy - Groupwise summary statistics, general linear contrasts,
LSMEANS (least-squares-means), and other utilities
Diff between doBy versions 4.4.4 dated 2011-12-31 and 4.4.6 dated 2012-01-18
Description: doBy contains a variety of utilities including: 1)
Facilities for groupwise computations of summary statistics and
other facilities for working with grouped data. 2) General
linear contrasts and LSMEANS (least-squares-means also known as
population means), 3) Rscript2HTML for autmatic generation of
HTML file from R-script with a minimum of markup, 4)
implementation of the Kenward-Roger method for estimating
denominator degrees of freedom various for tests in linear
mixed models, 5) methods for determining p-values based on
parametric bootstrap in linear mixed models 6) other utilities.
doBy originally contained facilities for 'doing something to
data where data would be partitioned by some variables which
define groupings of data' - hence the name doBy.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
doBy-4.4.4/doBy/R/funBy.R |only
doBy-4.4.4/doBy/R/lapplyBy.R |only
doBy-4.4.4/doBy/R/lmBy.R |only
doBy-4.4.4/doBy/R/orderBy.R |only
doBy-4.4.4/doBy/R/sampleBy.R |only
doBy-4.4.4/doBy/R/scaleBy.R |only
doBy-4.4.4/doBy/R/splitBy.R |only
doBy-4.4.4/doBy/R/subsetBy.R |only
doBy-4.4.4/doBy/R/summaryBy.R |only
doBy-4.4.4/doBy/R/transformBy.R |only
doBy-4.4.4/doBy/inst/doc/Example1-Puromycin-REPORT.pdf |only
doBy-4.4.4/doBy/inst/doc/Example1-Puromycin.R |only
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doBy-4.4.4/doBy/inst/doc/PuromycinAnalysis-report.R |only
doBy-4.4.4/doBy/inst/doc/PuromycinAnalysis-report.pdf |only
doBy-4.4.4/doBy/inst/doc/figures |only
doBy-4.4.6/doBy/ChangeLog | 14
doBy-4.4.6/doBy/DESCRIPTION | 26
doBy-4.4.6/doBy/MD5 | 64 +-
doBy-4.4.6/doBy/R/BY-funBy.R |only
doBy-4.4.6/doBy/R/BY-lapplyBy.R |only
doBy-4.4.6/doBy/R/BY-lmBy.R |only
doBy-4.4.6/doBy/R/BY-orderBy.R |only
doBy-4.4.6/doBy/R/BY-sampleBy.R |only
doBy-4.4.6/doBy/R/BY-scaleBy.R |only
doBy-4.4.6/doBy/R/BY-splitBy.R |only
doBy-4.4.6/doBy/R/BY-subsetBy.R |only
doBy-4.4.6/doBy/R/BY-summaryBy.R |only
doBy-4.4.6/doBy/R/BY-transformBy.R |only
doBy-4.4.6/doBy/R/HTMLreportFUN.R | 449 ++++++++---------
doBy-4.4.6/doBy/doBy-Ex.R | 11
doBy-4.4.6/doBy/inst/doc/doBy.pdf |binary
doBy-4.4.6/doBy/inst/doc/popMeans.pdf |binary
doBy-4.4.6/doBy/man/Rscript2HTML.Rd | 26
doBy-4.4.6/doBy/man/doBy-internal.Rd | 11
doBy-4.4.6/doBy/man/recodeVar.Rd | 1
doBy-4.4.6/doBy/vignettes |only
37 files changed, 327 insertions(+), 275 deletions(-)
Title: R based Twitter client
Diff between twitteR versions 0.99.15 dated 2011-12-02 and 0.99.17 dated 2012-01-18
Description: Provides an interface to the Twitter web API
Author: Jeff Gentry
Maintainer: Jeff Gentry
DESCRIPTION | 6 +++---
MD5 | 16 ++++++++--------
R/base.R | 5 +++--
R/dm.R | 22 +++++++++++++++-------
R/statuses.R | 34 +++++++++++++++++++++-------------
R/trends.R | 4 ++--
R/users.R | 23 +++++++++++++++++++----
inst/doc/twitteR.pdf |binary
man/getUser.Rd | 8 ++++++--
9 files changed, 77 insertions(+), 41 deletions(-)
Title: General network (HTTP/FTP/...) client interface for R
Diff between RCurl versions 1.9-4 dated 2012-01-08 and 1.9-5 dated 2012-01-18
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang
Changes.html | 11 ++++++++++-
DESCRIPTION | 22 ++++++++++++----------
MD5 | 11 ++++++-----
R/iconv.R | 3 +++
man/basicTextGatherer.Rd | 10 +++++-----
man/getURL.Rd | 18 ++++++++++--------
url.exists.R |only
7 files changed, 46 insertions(+), 29 deletions(-)
Title: Network representations of relationships in data
Diff between qgraph versions 0.5.3 dated 2011-11-18 and 1.0.0 dated 2012-01-18
Description: The qgraph package can be used to visualize data as
networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp,
Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp
DESCRIPTION | 17 -
MD5 | 20 -
NAMESPACE | 3
NEWS | 268 +++++++++++-----------
R/centrality.R |only
R/qgraph.R | 278 +++++++++++++----------
R/qgraph.lavaan.R | 8
R/qgraph.panel.R | 18 +
R/qgraph_cfa.R | 2
R/qgraph_loadings.R | 611 ++++++++++++++++++++++++++--------------------------
man/centrality.Rd |only
man/qgraph.Rd | 14 +
12 files changed, 663 insertions(+), 576 deletions(-)
Title: Parametric bootstrap and Kenward Roger based methods for mixed
model comparison
Diff between pbkrtest versions 0.2.0 dated 2011-12-31 and 0.2.1 dated 2012-01-18
Description: Test in linear mixed effects models based on parametric
bootstrap approaches and Kenward-Roger modification of F-tests
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
ChangeLog | 7 ++++++
DESCRIPTION | 12 ++++++-----
MD5 | 6 ++---
R/PB_ParmBoot.R | 59 +++++++++++++++++++++++++++++++++++---------------------
4 files changed, 54 insertions(+), 30 deletions(-)
Title: Selected ISO codes
Diff between ISOcodes versions 2011.07.31 dated 2011-07-31 and 2012.01.18 dated 2012-01-18
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta and Kurt Hornik
Maintainer: Kurt Hornik
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
data/ISO_15924.rda |binary
data/ISO_3166_1.rda |binary
data/ISO_3166_2.rda |binary
data/ISO_3166_3.rda |binary
data/ISO_4217.rda |binary
data/ISO_4217_Historic.rda |binary
data/ISO_639_2.rda |binary
data/ISO_639_3.rda |binary
data/ISO_639_3_Retirements.rda |binary
data/ISO_639_5.rda |binary
data/ISO_8859.rda |binary
data/UN_M.49_Countries.rda |binary
data/UN_M.49_Regions.rda |binary
man/ISO_639.Rd | 3 ++-
17 files changed, 6 insertions(+), 5 deletions(-)
Title: Analysis of Discretely Observed linear
Birth-And-Death(-and-immigration) Markov Chains
Diff between DOBAD versions 1.0 dated 2011-01-03 and 1.0.1 dated 2012-01-18
Description: Frequentist (EM) and Bayesian (MCMC) Methods for Inference
of Birth-Death-Immigration Markov Chains
Author: Charles Doss, Vladimir Minin, Marc Suchard
Maintainer: Charles Doss
DOBAD-1.0.1/DOBAD/DESCRIPTION | 10 +--
DOBAD-1.0.1/DOBAD/MD5 |only
DOBAD-1.0.1/DOBAD/NAMESPACE | 1
DOBAD-1.0.1/DOBAD/R/BD_EM.R | 4 -
DOBAD-1.0.1/DOBAD/R/BD_EM_helpers.R | 38 ++++--------
DOBAD-1.0.1/DOBAD/R/BD_calc.R | 4 -
DOBAD-1.0.1/DOBAD/R/BD_calc_helpers.R | 4 -
DOBAD-1.0.1/DOBAD/R/BDclasses.R | 14 ++++
DOBAD-1.0.1/DOBAD/inst/doc/.Rhistory |only
DOBAD-1.0.1/DOBAD/inst/doc/BD_EM.Rnw | 47 ++++++++++-----
DOBAD-1.0.1/DOBAD/inst/doc/BD_EM.pdf |binary
DOBAD-1.0.1/DOBAD/inst/doc/BD_EM_wImmig.pdf |binary
DOBAD-1.0.1/DOBAD/inst/doc/BD_MCMC.Rnw | 41 ++++++-------
DOBAD-1.0.1/DOBAD/inst/doc/BD_MCMC.pdf |binary
DOBAD-1.0.1/DOBAD/inst/doc/sim_condBD.Rnw | 4 -
DOBAD-1.0.1/DOBAD/inst/doc/sim_condBD.pdf |binary
DOBAD-1.0.1/DOBAD/man/BD.EMInference.prodExpecs.Rd | 4 -
DOBAD-1.0.1/DOBAD/man/BD.MCMC.SC.Rd | 2
DOBAD-1.0.1/DOBAD/man/BDMC-class.Rd | 4 -
DOBAD-1.0.1/DOBAD/man/BDPOloglikeGradSqr.CTMC_PO_many.Rd | 34 ----------
DOBAD-1.0.1/DOBAD/man/BDloglikelihood.PO.Rd | 17 -----
DOBAD-1.0.1/DOBAD/man/BDsummaryStats.Rd | 3
DOBAD-1.0.1/DOBAD/man/CTMC-class.Rd | 4 -
DOBAD-1.0.1/DOBAD/man/CTMC.simulate.Rd | 28 --------
DOBAD-1.0.1/DOBAD/man/CTMC.simulate.piecewise.Rd | 26 --------
DOBAD-1.0.1/DOBAD/man/CTMCPO2indepIntervals.Rd | 26 --------
DOBAD-1.0.1/DOBAD/man/CTMC_PO_1-class.Rd | 6 -
DOBAD-1.0.1/DOBAD/man/CTMC_PO_many-class.Rd | 6 -
DOBAD-1.0.1/DOBAD/man/EM.BD.SC.Rd | 3
DOBAD-1.0.1/DOBAD/man/EMutilities.Rd | 8 --
DOBAD-1.0.1/DOBAD/man/Nij.Rd | 22 -------
DOBAD-1.0.1/DOBAD/man/Nplus.Rd | 3
DOBAD-1.0.1/DOBAD/man/add.joint.mean.many.Rd | 3
DOBAD-1.0.1/DOBAD/man/bdARsimCondEnd.Rd | 14 ----
DOBAD-1.0.1/DOBAD/man/bracket-methods.Rd |only
DOBAD-1.0.1/DOBAD/man/combineCTMC.Rd | 22 -------
DOBAD-1.0.1/DOBAD/man/derivType.Rd | 29 ---------
DOBAD-1.0.1/DOBAD/man/doublebracket-methods.Rd |only
DOBAD-1.0.1/DOBAD/man/getBDMCsPOlist-methods.Rd |only
DOBAD-1.0.1/DOBAD/man/getBDinform.PO.Rd | 1
DOBAD-1.0.1/DOBAD/man/getBDinform.Rd | 2
DOBAD-1.0.1/DOBAD/man/getDataSummary.CTMC_PO_many.Rd | 26 --------
DOBAD-1.0.1/DOBAD/man/getInitParams.Rd | 32 ----------
DOBAD-1.0.1/DOBAD/man/getMCstate.Rd | 29 ---------
DOBAD-1.0.1/DOBAD/man/getNewParams.SC.Rd | 28 --------
DOBAD-1.0.1/DOBAD/man/getPartialData.Rd | 22 -------
DOBAD-1.0.1/DOBAD/man/getTimes.Rd | 2
DOBAD-1.0.1/DOBAD/man/graph.CTMC.Rd | 21 ------
DOBAD-1.0.1/DOBAD/man/list2CTMC.Rd | 26 --------
DOBAD-1.0.1/DOBAD/man/num.deriv.Rd | 22 -------
DOBAD-1.0.1/DOBAD/man/power.coef.one.Rd | 26 --------
DOBAD-1.0.1/DOBAD/man/process.prob.one.Rd | 29 ---------
DOBAD-1.0.1/DOBAD/man/sampleJumpTime.Rd | 16 -----
DOBAD-1.0.1/DOBAD/man/simplify.Rd | 15 ----
DOBAD-1.0.1/DOBAD/vignettes |only
DOBAD-1.0/DOBAD/inst/doc/BD_EM.tex |only
DOBAD-1.0/DOBAD/inst/doc/BD_EM_wImmig.tex |only
DOBAD-1.0/DOBAD/inst/doc/BD_EM_wImmigRnw.rsav |only
DOBAD-1.0/DOBAD/inst/doc/BD_MCMC-lambdaPlot.eps |only
DOBAD-1.0/DOBAD/inst/doc/BD_MCMC-lambdaPlot.pdf |only
DOBAD-1.0/DOBAD/inst/doc/BD_MCMC-muPlot.eps |only
DOBAD-1.0/DOBAD/inst/doc/BD_MCMC-muPlot.pdf |only
DOBAD-1.0/DOBAD/inst/doc/BD_MCMC.tex |only
DOBAD-1.0/DOBAD/inst/doc/DOBADbiblio.bib |only
DOBAD-1.0/DOBAD/inst/doc/Makefile |only
DOBAD-1.0/DOBAD/inst/doc/Rplots.pdf |only
DOBAD-1.0/DOBAD/inst/doc/biom.bst |only
DOBAD-1.0/DOBAD/inst/doc/sim_condBD.tex |only
68 files changed, 120 insertions(+), 608 deletions(-)
Title: Cytometric diversity indices
Diff between cytoDiv versions 0.5-2 dated 2011-11-22 and 0.5-3 dated 2012-01-18
Description: Calculates ecological diversity indices for a microbial
community
Author: Francois Ribalet
Maintainer: Francois Ribalet
DESCRIPTION | 11 ++++++-----
MD5 | 7 ++++---
NAMESPACE |only
R/CytoDiv.R | 12 ++++++------
man/cytoDiv.Rd | 9 +++++----
5 files changed, 21 insertions(+), 18 deletions(-)
Title: Buckley-James Regression for Survival Data with High-Dimensional
Covariates
Diff between bujar versions 0.1 dated 2011-04-01 and 0.1-1 dated 2012-01-18
Description: Buckley-James regression for right-censoring survival data
with high-dimensional covariates. Including L_2 boosting with
componentwise linear least squares, componentwise smoothing
splines, P-splines, regression trees and boosted MARS. Other
high-dimensional tools include elastic net, MARS, ACOSSO.
Author: Zhu Wang
Maintainer: Zhu Wang
DESCRIPTION | 8 ++---
MD5 |only
NEWS |only
R/acosso.R | 16 +++++-----
R/bujar.R | 78 ++++++++++++++++++++++++++++++++------------------
R/gamplot_out.R |only
R/mypartialPlot.R |only
R/rif.R |only
man/bujar-internal.Rd | 2 +
man/bujar.Rd | 9 +++--
10 files changed, 70 insertions(+), 43 deletions(-)