Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 2.8-1 dated 2011-12-16 and 2.9-0 dated 2012-01-25
Description: Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms. Includes general time-series tools,
plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RSEIS-2.8-1/RSEIS/R/DUMPLOC.R |only
RSEIS-2.8-1/RSEIS/R/PICK.GEN.R |only
RSEIS-2.8-1/RSEIS/R/distaz.R |only
RSEIS-2.8-1/RSEIS/man/DUMPLOC.Rd |only
RSEIS-2.8-1/RSEIS/man/distaz.Rd |only
RSEIS-2.9-0/RSEIS/DESCRIPTION | 11 +-
RSEIS-2.9-0/RSEIS/MD5 | 114 +++++++++++++---------
RSEIS-2.9-0/RSEIS/NEWS | 2
RSEIS-2.9-0/RSEIS/R/ETECTG.R | 8 +
RSEIS-2.9-0/RSEIS/R/EmptyPickfile.R | 4
RSEIS-2.9-0/RSEIS/R/JGET.seis.R | 4
RSEIS-2.9-0/RSEIS/R/JSAC.seis.R | 12 +-
RSEIS-2.9-0/RSEIS/R/JSEGY.seis.R | 13 +-
RSEIS-2.9-0/RSEIS/R/Mine.seis.R | 4
RSEIS-2.9-0/RSEIS/R/SPECT.drive.R | 2
RSEIS-2.9-0/RSEIS/R/WRITEUW.R | 2
RSEIS-2.9-0/RSEIS/R/YPIX.R |only
RSEIS-2.9-0/RSEIS/R/addWPX.R |only
RSEIS-2.9-0/RSEIS/R/brune.doom.R | 1
RSEIS-2.9-0/RSEIS/R/brune.search.R | 15 ++-
RSEIS-2.9-0/RSEIS/R/buttonFUNCS.R |only
RSEIS-2.9-0/RSEIS/R/catWPX.R |only
RSEIS-2.9-0/RSEIS/R/checkWPX.R |only
RSEIS-2.9-0/RSEIS/R/cleanWPX.R |only
RSEIS-2.9-0/RSEIS/R/cleanpickfile.R | 7 -
RSEIS-2.9-0/RSEIS/R/convert2Rseis.R | 2
RSEIS-2.9-0/RSEIS/R/deleteWPX.R |only
RSEIS-2.9-0/RSEIS/R/makeDB.R | 21 +++-
RSEIS-2.9-0/RSEIS/R/parseFN2STA.R | 20 ++--
RSEIS-2.9-0/RSEIS/R/pickFUNCS.R | 164 +++++++++++----------------------
RSEIS-2.9-0/RSEIS/R/pickhandler.R | 23 ----
RSEIS-2.9-0/RSEIS/R/pickit.R | 9 +
RSEIS-2.9-0/RSEIS/R/plotJGET.R | 2
RSEIS-2.9-0/RSEIS/R/rDUMPLOC.R |only
RSEIS-2.9-0/RSEIS/R/rdistaz.R |only
RSEIS-2.9-0/RSEIS/R/repairWPX.R |only
RSEIS-2.9-0/RSEIS/R/replaceWPX.R |only
RSEIS-2.9-0/RSEIS/R/saveWPX.R |only
RSEIS-2.9-0/RSEIS/R/selAPX.R | 2
RSEIS-2.9-0/RSEIS/R/selWPX.R |only
RSEIS-2.9-0/RSEIS/R/setWPX.R |only
RSEIS-2.9-0/RSEIS/R/swig.R | 33 ++++--
RSEIS-2.9-0/RSEIS/R/wlet.drive.R | 6 -
RSEIS-2.9-0/RSEIS/inst/doc/hodo.Rnw | 4
RSEIS-2.9-0/RSEIS/inst/doc/hodo.pdf |binary
RSEIS-2.9-0/RSEIS/inst/doc/rseis.Rnw | 4
RSEIS-2.9-0/RSEIS/inst/doc/rseis.pdf |binary
RSEIS-2.9-0/RSEIS/man/JGET.seis.Rd | 18 +--
RSEIS-2.9-0/RSEIS/man/JSAC.seis.Rd | 13 +-
RSEIS-2.9-0/RSEIS/man/PLOT.SEISN.Rd | 2
RSEIS-2.9-0/RSEIS/man/RSEIS-package.Rd | 7 -
RSEIS-2.9-0/RSEIS/man/YPIX.Rd | 14 ++
RSEIS-2.9-0/RSEIS/man/addWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/brune.doom.Rd | 3
RSEIS-2.9-0/RSEIS/man/brune.search.Rd | 3
RSEIS-2.9-0/RSEIS/man/catWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/checkWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/cleanWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/deleteWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/grotseis.Rd | 4
RSEIS-2.9-0/RSEIS/man/matsquiggle.Rd | 2
RSEIS-2.9-0/RSEIS/man/parseFN2STA.Rd | 22 +++-
RSEIS-2.9-0/RSEIS/man/plotJGET.Rd | 2
RSEIS-2.9-0/RSEIS/man/prepSEIS.Rd | 2
RSEIS-2.9-0/RSEIS/man/rDUMPLOC.Rd |only
RSEIS-2.9-0/RSEIS/man/rdistaz.Rd |only
RSEIS-2.9-0/RSEIS/man/repairWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/replaceWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/saveWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/selAPX.Rd | 4
RSEIS-2.9-0/RSEIS/man/setWPX.Rd |only
RSEIS-2.9-0/RSEIS/man/swig.Rd | 4
RSEIS-2.9-0/RSEIS/man/varsquiggle.Rd | 2
73 files changed, 322 insertions(+), 269 deletions(-)
Title: Graphical User Interface (GUI) for interactive R analysis
sessions
Diff between RPMG versions 2.0-8 dated 2011-10-20 and 2.1-0 dated 2012-01-25
Description: Poor Man's Gui: create interactive R analysis sessions
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
RPMG-2.0-8/RPMG/R/GETXprofile.R |only
RPMG-2.0-8/RPMG/man/GETXprofile.Rd |only
RPMG-2.1-0/RPMG/DESCRIPTION | 6 +++---
RPMG-2.1-0/RPMG/MD5 | 8 ++++----
RPMG-2.1-0/RPMG/R/XSECDEM.R | 2 +-
RPMG-2.1-0/RPMG/R/aGETXprofile.R |only
RPMG-2.1-0/RPMG/man/aGETXprofile.Rd |only
7 files changed, 8 insertions(+), 8 deletions(-)
Title: Topographic and Geologic Mapping
Diff between GEOmap versions 1.6-01 dated 2011-10-19 and 1.6-03 dated 2012-01-25
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
GEOmap-1.6-01/GEOmap/R/ymarginfo.R |only
GEOmap-1.6-01/GEOmap/man/ymarginfo.Rd |only
GEOmap-1.6-03/GEOmap/DESCRIPTION | 6 +--
GEOmap-1.6-03/GEOmap/MD5 | 14 +++-----
GEOmap-1.6-03/GEOmap/data/EHB.LLZ.RData |binary
GEOmap-1.6-03/GEOmap/data/NSWath.RData |binary
GEOmap-1.6-03/GEOmap/data/coastmap.RData |binary
GEOmap-1.6-03/GEOmap/inst/doc/GEOmap.Rnw | 51 ++++++++++++++++++++++++++++++-
GEOmap-1.6-03/GEOmap/inst/doc/GEOmap.pdf |binary
9 files changed, 59 insertions(+), 12 deletions(-)
Title: Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry
Diff between caribou versions 0.3-0 dated 2011-11-18 and 1.0 dated 2012-01-25
Description: This is a package for estimating the population size of
migratory caribou herds based on large scale aggregations
monitored by radio telemetry. It implements the methodology
found in the article by Rivest et al. (1998) about caribou
abundance estimation. It also includes a function based on the
Lincoln-Petersen Index as applied to radio telemetry data by
White and Garrott (1990).
Author: Helene Crepeau
Maintainer: Sophie Baillargeon
caribou-0.3-0/caribou/R/caribou.r |only
caribou-1.0/caribou/DESCRIPTION | 29 +++++++++++--------
caribou-1.0/caribou/MD5 | 25 ++++++++++++----
caribou-1.0/caribou/R/abundance.R |only
caribou-1.0/caribou/R/internal.r |only
caribou-1.0/caribou/R/petersen.R |only
caribou-1.0/caribou/data/BEH00.rda |only
caribou-1.0/caribou/data/GRH01.rda |only
caribou-1.0/caribou/data/GRH10.rda |only
caribou-1.0/caribou/data/LRH01.rda |only
caribou-1.0/caribou/data/WAH09.rda |only
caribou-1.0/caribou/inst |only
caribou-1.0/caribou/man/BEH00.Rd |only
caribou-1.0/caribou/man/GRH01.Rd |only
caribou-1.0/caribou/man/GRH10.Rd |only
caribou-1.0/caribou/man/GRH93.Rd | 10 ++++--
caribou-1.0/caribou/man/LRH01.Rd |only
caribou-1.0/caribou/man/WAH09.Rd |only
caribou-1.0/caribou/man/abundance.Rd | 44 +++++++++++++++++++++--------
caribou-1.0/caribou/man/caribou.package.Rd | 41 ++++++++++++++++++++++-----
caribou-1.0/caribou/man/petersen.Rd | 38 +++++++++++++++++--------
21 files changed, 137 insertions(+), 50 deletions(-)
Title: Tools to Deal with Raster Maps
Diff between adehabitatMA versions 0.3.1 dated 2011-08-26 and 0.3.2 dated 2012-01-25
Description: A collection of tools to deal with raster maps
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
R/buffer.r | 3 ++-
R/count.points.r | 3 ++-
R/distfacmap.r | 3 ++-
R/explore.r | 3 ++-
R/getcontour.r | 3 ++-
R/hist.SpatialPixelsDataFrame.r | 3 ++-
R/join.r | 3 ++-
R/labcon.r | 3 ++-
R/lowres.r | 3 ++-
R/morphology.r | 3 ++-
R/show.r | 2 --
R/subsetmap.r | 3 ++-
inst/doc/adehabitatMA.pdf |binary
15 files changed, 40 insertions(+), 31 deletions(-)
Title: Home range Estimation
Diff between adehabitatHR versions 0.3.3 dated 2011-09-09 and 0.3.4 dated 2012-01-25
Description: A collection of tools for the estimation of animals home
range
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge
DESCRIPTION | 8
MD5 | 10
R/kernelovelaphr.r | 9
R/kerneloverlap.r | 8
inst/doc/adehabitatHR.Rnw | 2
inst/doc/adehabitatHR.pdf | 4544 ++++++++++++++++++++++------------------------
6 files changed, 2267 insertions(+), 2314 deletions(-)
Title: Calculation of the Standardised Precipitation-Evapotranspiration
Index
Diff between SPEI versions 1.0 dated 2011-10-18 and 1.1 dated 2012-01-25
Description: A set of functions for computing potential
evapotranspiration and several widely used drought indices
including the Standardized Precipitation-Evapotranspiration
Index (SPEI).
Author: Santiago Beguería
Maintainer: Santiago Beguería
DESCRIPTION | 6 +-
MD5 | 16 +++--
NAMESPACE |only
R/penman.R | 15 +++--
R/spei.R | 140 ++++++++++++++++++++++++++++++++++++++++++++++------
R/spi.R | 71 +++++++++++++++++++++++++-
SPEI-Ex.R | 56 +++++++++++++-------
man/SPEI-package.Rd | 2
man/spei-methods.Rd |only
man/spei.Rd | 101 ++++++++++++++++++++++++++-----------
10 files changed, 322 insertions(+), 85 deletions(-)
Title: The Rebmix Package
Diff between rebmix versions 2.2.1 dated 2011-05-03 and 2.3.0 dated 2012-01-25
Description: R functions for random univariate and multivariate finite
mixture generation, number of components, component weights and
component parameters estimation, printing and plotting of
finite mixtures and class membership prediction. Variables can
be either continuous or discrete.
Author: Marko Nagode
Maintainer: Marko Nagode
rebmix-2.2.1/rebmix/COPYING |only
rebmix-2.2.1/rebmix/COPYRIGHT |only
rebmix-2.3.0/rebmix/DESCRIPTION | 13
rebmix-2.3.0/rebmix/MD5 |only
rebmix-2.3.0/rebmix/NAMESPACE | 2
rebmix-2.3.0/rebmix/R/REBMIX.R | 1491 ++++++++++++++++----
rebmix-2.3.0/rebmix/data/adult.rda |only
rebmix-2.3.0/rebmix/data/galaxy.rda |binary
rebmix-2.3.0/rebmix/data/wine.rda |binary
rebmix-2.3.0/rebmix/inst/CITATION | 2
rebmix-2.3.0/rebmix/inst/NEWS.Rd |only
rebmix-2.3.0/rebmix/inst/doc/rebmix.Rnw | 1821 +++++++++++-------------
rebmix-2.3.0/rebmix/inst/doc/rebmix.bib | 8
rebmix-2.3.0/rebmix/inst/doc/rebmix.pdf |binary
rebmix-2.3.0/rebmix/man/REBMIX.Rd | 148 +-
rebmix-2.3.0/rebmix/man/RNGMIX.Rd | 81 -
rebmix-2.3.0/rebmix/man/adult.Rd |only
rebmix-2.3.0/rebmix/man/coef.REBMIX.Rd |only
rebmix-2.3.0/rebmix/man/galaxy.Rd | 6
rebmix-2.3.0/rebmix/man/plot.REBMIX.Rd | 69
rebmix-2.3.0/rebmix/man/predict.list.Rd |only
rebmix-2.3.0/rebmix/man/print.REBMIX.Rd |only
rebmix-2.3.0/rebmix/man/print.RNGMIX.Rd |only
rebmix-2.3.0/rebmix/man/summary.REBMIX.Rd |only
rebmix-2.3.0/rebmix/man/wine.Rd | 51
rebmix-2.3.0/rebmix/src/Rrebmix.c | 967 ++++++++++++-
rebmix-2.3.0/rebmix/src/rebmix.c | 5
rebmix-2.3.0/rebmix/src/rebmixf.c | 2197 ++++++++++++++++++++----------
rebmix-2.3.0/rebmix/src/rebmixf.h | 62
rebmix-2.3.0/rebmix/src/rngmixf.c | 260 ++-
rebmix-2.3.0/rebmix/src/rngmixf.h | 26
31 files changed, 4883 insertions(+), 2326 deletions(-)
Title: Various plotting functions
Diff between plotrix versions 3.3-3 dated 2011-12-28 and 3.3-5 dated 2012-01-25
Description: Lots of plots, various labeling, axis and color scaling
functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry
Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi,
Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl
Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa
Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby
Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers
Maintainer: Jim Lemon
DESCRIPTION | 26 ++++++++++++--------------
MD5 | 14 +++++++-------
NEWS | 5 +++++
R/barNest.R | 11 ++++++++++-
R/dispersion.R | 23 ++++++++++++++---------
R/drawNestedBars.R | 15 +++++++++------
man/barNest.Rd | 3 ++-
man/dispersion.Rd | 8 +++++++-
8 files changed, 66 insertions(+), 39 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 1.6.6 dated 2012-01-14 and 1.7.0 dated 2012-01-25
Description: Model selection and model averaging based on information
criteria (AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-1.6.6/MuMIn/R/coefDf.R |only
MuMIn-1.7.0/MuMIn/DESCRIPTION | 12 -
MuMIn-1.7.0/MuMIn/MD5 | 75 +++----
MuMIn-1.7.0/MuMIn/NAMESPACE | 46 ++--
MuMIn-1.7.0/MuMIn/NEWS | 18 +
MuMIn-1.7.0/MuMIn/R/beta.weights.R | 6
MuMIn-1.7.0/MuMIn/R/class-gamm.R | 2
MuMIn-1.7.0/MuMIn/R/class-unmarkedFit.R | 16 -
MuMIn-1.7.0/MuMIn/R/coefTable.R | 110 ++++++-----
MuMIn-1.7.0/MuMIn/R/dredge.R | 320 +++++++++++++++++++-------------
MuMIn-1.7.0/MuMIn/R/ext.R | 76 +++++++
MuMIn-1.7.0/MuMIn/R/get.models.R | 27 +-
MuMIn-1.7.0/MuMIn/R/getAllTerms.R | 35 +--
MuMIn-1.7.0/MuMIn/R/makeArgs.R | 14 +
MuMIn-1.7.0/MuMIn/R/misc-utils.R | 30 ++-
MuMIn-1.7.0/MuMIn/R/model-utils.R | 209 +++++++++++++-------
MuMIn-1.7.0/MuMIn/R/model.avg.R | 240 ++++++++++++++++--------
MuMIn-1.7.0/MuMIn/R/model.sel.R | 97 +++++++--
MuMIn-1.7.0/MuMIn/R/par.avg.R | 2
MuMIn-1.7.0/MuMIn/R/pdredge.R | 219 +++++++++++----------
MuMIn-1.7.0/MuMIn/data/Beetle.rda |binary
MuMIn-1.7.0/MuMIn/data/Cement.rda |binary
MuMIn-1.7.0/MuMIn/demo/pdredge.pcount.R | 4
MuMIn-1.7.0/MuMIn/inst/TODO | 13 -
MuMIn-1.7.0/MuMIn/inst/doc/gamm.Rnw | 9
MuMIn-1.7.0/MuMIn/inst/doc/gamm.pdf |binary
MuMIn-1.7.0/MuMIn/man/AICc.Rd | 2
MuMIn-1.7.0/MuMIn/man/QAIC.Rd | 3
MuMIn-1.7.0/MuMIn/man/beetle.Rd | 16 -
MuMIn-1.7.0/MuMIn/man/dredge.Rd | 25 +-
MuMIn-1.7.0/MuMIn/man/mod.sel.Rd | 30 +--
MuMIn-1.7.0/MuMIn/man/model-utils.Rd | 17 +
MuMIn-1.7.0/MuMIn/man/model.avg.Rd | 81 +++++---
MuMIn-1.7.0/MuMIn/man/pdredge.Rd | 19 +
MuMIn-1.7.0/MuMIn/tests/classes.R | 156 +++++++++++----
MuMIn-1.7.0/MuMIn/tests/coxme.R |only
MuMIn-1.7.0/MuMIn/tests/gamm.R | 8
MuMIn-1.7.0/MuMIn/tests/parallel.R | 19 +
MuMIn-1.7.0/MuMIn/tests/singularities.R |only
MuMIn-1.7.0/MuMIn/tests/unmarked.R | 18 +
40 files changed, 1284 insertions(+), 690 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-23 0.1
Title: Partitioning using deletion, substitution, and addition moves
Diff between partDSA versions 0.7.1 dated 2010-04-27 and 0.8.4 dated 2012-01-25
Description: partDSA is a novel tool for generating a piecewise
constant estimation list of increasingly complex predictors
based on an intensive and comprehensive search over the entire
covariate space.
Author: Annette Molinaro
Maintainer: Annette Molinaro
partDSA-0.7.1/partDSA/examples/boston.xml |only
partDSA-0.7.1/partDSA/examples/test1.xml |only
partDSA-0.7.1/partDSA/examples/test2.xml |only
partDSA-0.7.1/partDSA/examples/test3.xml |only
partDSA-0.7.1/partDSA/inst/doc/Sweave.sty |only
partDSA-0.7.1/partDSA/inst/doc/jss.bst |only
partDSA-0.7.1/partDSA/inst/doc/jss.cls |only
partDSA-0.8.4/partDSA/DESCRIPTION | 19
partDSA-0.8.4/partDSA/MD5 |only
partDSA-0.8.4/partDSA/NAMESPACE | 3
partDSA-0.8.4/partDSA/R/addon.R | 67 +
partDSA-0.8.4/partDSA/R/algAlone2-Leafy.R |only
partDSA-0.8.4/partDSA/R/algAlone2.R | 91 +-
partDSA-0.8.4/partDSA/R/code.2-Survival.R |only
partDSA-0.8.4/partDSA/R/code.2.R | 773 +++++++++---------
partDSA-0.8.4/partDSA/R/control.R | 38
partDSA-0.8.4/partDSA/R/delete.R | 2
partDSA-0.8.4/partDSA/R/main-Leafy.R |only
partDSA-0.8.4/partDSA/R/main.R | 365 +++++++-
partDSA-0.8.4/partDSA/R/newfunctions-Leafy.R |only
partDSA-0.8.4/partDSA/R/newfunctions-Survival.R |only
partDSA-0.8.4/partDSA/R/newfunctions.R | 24
partDSA-0.8.4/partDSA/R/subst.R | 9
partDSA-0.8.4/partDSA/examples/BalancedData.R |only
partDSA-0.8.4/partDSA/examples/BreastCancer-TestSet.R |only
partDSA-0.8.4/partDSA/examples/cmpdat2.txt |only
partDSA-0.8.4/partDSA/examples/dataset.txt |only
partDSA-0.8.4/partDSA/examples/leafyboston.R |only
partDSA-0.8.4/partDSA/examples/surv.R |only
partDSA-0.8.4/partDSA/examples/surv2.R |only
partDSA-0.8.4/partDSA/inst/doc/partDSA.Rnw | 7
partDSA-0.8.4/partDSA/inst/doc/partDSA.pdf |binary
partDSA-0.8.4/partDSA/inst/doc/refs.bib | 10
partDSA-0.8.4/partDSA/inst/doc/survival.Rnw |only
partDSA-0.8.4/partDSA/inst/doc/survival.pdf |only
partDSA-0.8.4/partDSA/man/partDSA.Rd | 15
partDSA-0.8.4/partDSA/man/predict.partDSA.Rd | 4
37 files changed, 913 insertions(+), 514 deletions(-)
Title: Read binary files saved by Igor Pro (including Neuromatic data)
Diff between IgorR versions 0.4 dated 2012-01-14 and 0.5 dated 2012-01-25
Description: This package provides function to read data from the Igor
Pro data analysis program by Wavemetrics. The data formats
supported are Igor packed experiment format (pxp) and Igor
binary wave (ibw). See: http://www.wavemetrics.com/ for
details. It also includes some functions to load special pxp
files produced by the Neuromatic/Nclamp packages for recording
and analysing neuronal data. See
http://www.neuromatic.thinkrandom.com/ for details.
Author: Greg Jefferis
Maintainer: Greg Jefferis
IgorR-0.4/IgorR/README |only
IgorR-0.4/IgorR/man/ReadIgorBinary.Rd |only
IgorR-0.4/IgorR/man/ReadIgorPackedExperiment.Rd |only
IgorR-0.5/IgorR/DESCRIPTION | 8 -
IgorR-0.5/IgorR/MD5 | 24 +--
IgorR-0.5/IgorR/NAMESPACE | 4
IgorR-0.5/IgorR/NEWS |only
IgorR-0.5/IgorR/R/ReadIgorBinary.R | 111 ++++++++++------
IgorR-0.5/IgorR/R/ReadNclamp.R | 4
IgorR-0.5/IgorR/README.md |only
IgorR-0.5/IgorR/inst/igor/ExperimentWithHigherChars.pxp |only
IgorR-0.5/IgorR/inst/tests/test-ibw.R | 6
IgorR-0.5/IgorR/inst/tests/test-pxp.R | 29 +++-
IgorR-0.5/IgorR/man/WaveToTimeSeries.Rd | 2
IgorR-0.5/IgorR/man/read.ibw.Rd |only
IgorR-0.5/IgorR/man/read.pxp.Rd |only
IgorR-0.5/IgorR/man/tsp.igorwave.Rd | 3
17 files changed, 129 insertions(+), 62 deletions(-)
Title: Detection Localization Mapping for QTL
Diff between dlmap versions 1.07 dated 2010-12-08 and 1.11 dated 2012-01-25
Description: QTL mapping in a mixed model framework with separate
detection and localization stages. The first stage detects the
number of QTL on each chromosome based on the genetic variation
due to grouped markers on the chromosome; the second stage uses
this information to determine the most likely QTL positions.
The mixed model can accommodate general fixed and random
effects, including spatial effects in field trials and pedigree
effects. Applicable to backcrosses, doubled haploids,
recombinant inbred lines, F2 intercrosses, and association
mapping populations.
Author: Emma Huang and Andrew George
Maintainer: Emma Huang
dlmap-1.07/dlmap/R/calc.pos.R |only
dlmap-1.07/dlmap/R/detect.asreml.R |only
dlmap-1.07/dlmap/R/detect.lme.R |only
dlmap-1.07/dlmap/R/dlmap.asreml.R |only
dlmap-1.07/dlmap/R/dlmap.lme.R |only
dlmap-1.07/dlmap/R/localize.asreml.R |only
dlmap-1.07/dlmap/R/localize.lme.R |only
dlmap-1.07/dlmap/R/map.det.asreml.R |only
dlmap-1.07/dlmap/R/map.det.lme.R |only
dlmap-1.07/dlmap/R/map.loc.asreml.R |only
dlmap-1.07/dlmap/R/map.loc.lme.R |only
dlmap-1.07/dlmap/R/test.asreml.R |only
dlmap-1.07/dlmap/R/test.lme.R |only
dlmap-1.07/dlmap/R/wald.test.asreml.R |only
dlmap-1.07/dlmap/man/dlmap.main.Rd |only
dlmap-1.07/dlmap/man/plot.dlcross.Rd |only
dlmap-1.07/dlmap/man/plot.dlmap.Rd |only
dlmap-1.07/dlmap/man/profileplot.Rd |only
dlmap-1.07/dlmap/man/summary.dlcross.Rd |only
dlmap-1.07/dlmap/man/summary.dlmap.Rd |only
dlmap-1.11/dlmap/DESCRIPTION | 17 +++++++++--
dlmap-1.11/dlmap/MD5 |only
dlmap-1.11/dlmap/NAMESPACE | 14 ---------
dlmap-1.11/dlmap/NEWS |only
dlmap-1.11/dlmap/R/calcpos.R |only
dlmap-1.11/dlmap/R/dlcross.cross.R | 4 +-
dlmap-1.11/dlmap/R/dlcross.dlmap.R | 4 +-
dlmap-1.11/dlmap/R/dldetect.R |only
dlmap-1.11/dlmap/R/dllocalize.R |only
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dlmap-1.11/dlmap/R/dltest.R |only
dlmap-1.11/dlmap/R/profileplot.dlmap.R | 2 -
dlmap-1.11/dlmap/R/summary.dlcross.R | 12 ++++----
dlmap-1.11/dlmap/R/waldtest.R |only
dlmap-1.11/dlmap/R/waldtest.asreml.R |only
dlmap-1.11/dlmap/man/dlcross.Rd | 29 ++++++++++++++++----
dlmap-1.11/dlmap/man/dlmap-internal.Rd | 46 +++++++++++---------------------
dlmap-1.11/dlmap/man/dlmap-package.Rd | 14 ++++-----
dlmap-1.11/dlmap/man/dlmap.Rd |only
41 files changed, 71 insertions(+), 71 deletions(-)
Title: Extension of data.frame for fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns.
Diff between data.table versions 1.7.7 dated 2011-12-15 and 1.7.8 dated 2012-01-25
Description: Enhanced data.frame. Fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns in a short and
flexible syntax. i and j may be expressions of column names
directly, for faster development. Example: X[Y] is a fast join
for large data.
Author: M Dowle, T Short, S Lianoglou
Maintainer: M Dowle
DESCRIPTION | 15 +
MD5 | 48 ++---
NAMESPACE | 4
NEWS | 85 +++++++++
R/data.table.R | 193 +++++++++++++++-------
R/duplicated.R | 3
R/merge.R | 48 +++--
R/onAttach.R | 11 -
R/setattr.R | 3
R/setkey.R | 122 +++++++++-----
R/test.data.table.R | 33 ++-
inst/doc/datatable-faq.pdf |binary
inst/doc/datatable-intro.Rnw | 2
inst/doc/datatable-intro.pdf |binary
inst/doc/datatable-timings.pdf |binary
inst/tests/tests.Rraw | 114 +++++++++----
man/assign.Rd | 16 -
man/data.table.Rd | 21 +-
man/setkey.Rd | 34 ++-
man/test.data.table.Rd | 7
man/truelength.Rd | 7
src/assign.c | 355 ++++++++++++++++++++++++++++-------------
src/dogroups.c | 94 ++++++++--
src/reorder.c | 6
tests/tests.R | 1
25 files changed, 856 insertions(+), 366 deletions(-)
Title: Data Sets and Functions, supplementary to DAAG
Diff between DAAGxtras versions 0.8-2 dated 2011-02-09 and 0.8-3 dated 2012-01-25
Description: various data sets used in additional exercises for the
book Maindonald, J.H. and Braun, W.J. (3rd edn 2010) "Data
Analysis and Graphics Using R", and for a 'Data Mining' course.
Note that a number of datasets that were in earlier versions of
this package have been transferred to the DAAG package.
Author: John Maindonald
Maintainer: John Maindonald
DAAGxtras-0.8-2/DAAGxtras/R/confusion.R |only
DAAGxtras-0.8-2/DAAGxtras/R/zzz.R |only
DAAGxtras-0.8-2/DAAGxtras/data/audists.RData |only
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DAAGxtras-0.8-2/DAAGxtras/man/rockArt.Rd |only
DAAGxtras-0.8-3/DAAGxtras/DESCRIPTION | 14 +++++++-------
DAAGxtras-0.8-3/DAAGxtras/MD5 |only
DAAGxtras-0.8-3/DAAGxtras/NAMESPACE |only
DAAGxtras-0.8-3/DAAGxtras/data/MaskedPriming.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/SOI.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/covsample.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/covtest.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/covtrain.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/earlycrcktr.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/fishRivers.RData |binary
DAAGxtras-0.8-3/DAAGxtras/data/fumig.RData |binary
DAAGxtras-0.8-3/DAAGxtras/man/SOI.Rd | 21 ++++++++++-----------
24 files changed, 17 insertions(+), 18 deletions(-)
Title: Data Analysis And Graphics data and functions
Diff between DAAG versions 1.08 dated 2011-08-02 and 1.10 dated 2012-01-25
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data
Analysis and Graphics Using R".
Author: John Maindonald and W. John Braun
Maintainer: W. John Braun
DAAG-1.08/DAAG/inst/doc/plate12.jpg |only
DAAG-1.08/DAAG/inst/doc/rockArt.tex |only
DAAG-1.10/DAAG/DESCRIPTION | 12 +++---
DAAG-1.10/DAAG/MD5 |only
DAAG-1.10/DAAG/NAMESPACE |only
DAAG-1.10/DAAG/R/bestset.noise.R | 17 +++++---
DAAG-1.10/DAAG/R/bestsetNoise.R | 17 +++++---
DAAG-1.10/DAAG/R/bsnCV.R | 21 ++++++----
DAAG-1.10/DAAG/R/bsnVaryNvar.R |only
DAAG-1.10/DAAG/R/confusion.R |only
DAAG-1.10/DAAG/data/ACF1.rda |binary
DAAG-1.10/DAAG/data/Cars93.summary.rda |binary
DAAG-1.10/DAAG/data/DAAGxdb.rda |binary
DAAG-1.10/DAAG/data/Lottario.rda |binary
DAAG-1.10/DAAG/data/Manitoba.lakes.rda |binary
DAAG-1.10/DAAG/data/SP500W90.rda |binary
DAAG-1.10/DAAG/data/SP500close.rda |binary
DAAG-1.10/DAAG/data/ais.rda |binary
DAAG-1.10/DAAG/data/allbacks.rda |binary
DAAG-1.10/DAAG/data/anesthetic.rda |binary
DAAG-1.10/DAAG/data/ant111b.rda |binary
DAAG-1.10/DAAG/data/antigua.rda |binary
DAAG-1.10/DAAG/data/appletaste.rda |binary
DAAG-1.10/DAAG/data/audists.RData |only
DAAG-1.10/DAAG/data/aulatlong.RData |only
DAAG-1.10/DAAG/data/austpop.rda |binary
DAAG-1.10/DAAG/data/biomass.rda |binary
DAAG-1.10/DAAG/data/bomregions.RData |binary
DAAG-1.10/DAAG/data/bomregions2011.RData |only
DAAG-1.10/DAAG/data/bomsoi.rda |binary
DAAG-1.10/DAAG/data/bomsoi2001.rda |binary
DAAG-1.10/DAAG/data/bostonc.rda |binary
DAAG-1.10/DAAG/data/carprice.rda |binary
DAAG-1.10/DAAG/data/cerealsugar.rda |binary
DAAG-1.10/DAAG/data/cfseal.rda |binary
DAAG-1.10/DAAG/data/cities.rda |binary
DAAG-1.10/DAAG/data/codling.rda |binary
DAAG-1.10/DAAG/data/cottonworkers.rda |binary
DAAG-1.10/DAAG/data/cps1.RData |binary
DAAG-1.10/DAAG/data/cps2.RData |binary
DAAG-1.10/DAAG/data/cps3.RData |binary
DAAG-1.10/DAAG/data/cricketer.RData |binary
DAAG-1.10/DAAG/data/cuckoohosts.rda |binary
DAAG-1.10/DAAG/data/cuckoos.rda |binary
DAAG-1.10/DAAG/data/dengue.rda |binary
DAAG-1.10/DAAG/data/dewpoint.rda |binary
DAAG-1.10/DAAG/data/droughts.rda |binary
DAAG-1.10/DAAG/data/dumpdata.rda |binary
DAAG-1.10/DAAG/data/edcCO2.RData |binary
DAAG-1.10/DAAG/data/edcT.RData |binary
DAAG-1.10/DAAG/data/elastic1.rda |binary
DAAG-1.10/DAAG/data/elastic2.rda |binary
DAAG-1.10/DAAG/data/elasticband.rda |binary
DAAG-1.10/DAAG/data/fossilfuel.rda |binary
DAAG-1.10/DAAG/data/fossum.rda |binary
DAAG-1.10/DAAG/data/frogs.rda |binary
DAAG-1.10/DAAG/data/frostedflakes.rda |binary
DAAG-1.10/DAAG/data/fruitohms.rda |binary
DAAG-1.10/DAAG/data/gaba.RData |binary
DAAG-1.10/DAAG/data/geophones.rda |binary
DAAG-1.10/DAAG/data/greatLakes.RData |only
DAAG-1.10/DAAG/data/grog.RData |binary
DAAG-1.10/DAAG/data/head.injury.rda |binary
DAAG-1.10/DAAG/data/headInjury.rda |binary
DAAG-1.10/DAAG/data/hills.rda |binary
DAAG-1.10/DAAG/data/hills2000.rda |binary
DAAG-1.10/DAAG/data/hotspots.RData |binary
DAAG-1.10/DAAG/data/hotspots2006.RData |binary
DAAG-1.10/DAAG/data/houseprices.rda |binary
DAAG-1.10/DAAG/data/humanpower1.rda |binary
DAAG-1.10/DAAG/data/humanpower2.rda |binary
DAAG-1.10/DAAG/data/intersalt.RData |binary
DAAG-1.10/DAAG/data/ironslag.rda |binary
DAAG-1.10/DAAG/data/jobs.rda |binary
DAAG-1.10/DAAG/data/kiwishade.rda |binary
DAAG-1.10/DAAG/data/leafshape.rda |binary
DAAG-1.10/DAAG/data/leafshape17.rda |binary
DAAG-1.10/DAAG/data/leaftemp.all.rda |binary
DAAG-1.10/DAAG/data/leaftemp.rda |binary
DAAG-1.10/DAAG/data/litters.rda |binary
DAAG-1.10/DAAG/data/lung.rda |binary
DAAG-1.10/DAAG/data/measles.rda |binary
DAAG-1.10/DAAG/data/medExpenses.rda |binary
DAAG-1.10/DAAG/data/mifem.rda |binary
DAAG-1.10/DAAG/data/mignonette.rda |binary
DAAG-1.10/DAAG/data/milk.rda |binary
DAAG-1.10/DAAG/data/modelcars.rda |binary
DAAG-1.10/DAAG/data/monica.rda |binary
DAAG-1.10/DAAG/data/moths.rda |binary
DAAG-1.10/DAAG/data/nassCDS.RData |binary
DAAG-1.10/DAAG/data/nasshead.RData |binary
DAAG-1.10/DAAG/data/nihills.RData |binary
DAAG-1.10/DAAG/data/nsw74demo.rda |binary
DAAG-1.10/DAAG/data/nsw74psid1.rda |binary
DAAG-1.10/DAAG/data/nsw74psid3.rda |binary
DAAG-1.10/DAAG/data/nsw74psidA.rda |binary
DAAG-1.10/DAAG/data/nswdemo.RData |binary
DAAG-1.10/DAAG/data/nswpsid1.RData |binary
DAAG-1.10/DAAG/data/oddbooks.rda |binary
DAAG-1.10/DAAG/data/orings.rda |binary
DAAG-1.10/DAAG/data/ozone.rda |binary
DAAG-1.10/DAAG/data/pair65.rda |binary
DAAG-1.10/DAAG/data/possum.rda |binary
DAAG-1.10/DAAG/data/possumsites.rda |binary
DAAG-1.10/DAAG/data/poxetc.rda |binary
DAAG-1.10/DAAG/data/primates.rda |binary
DAAG-1.10/DAAG/data/progression.RData |binary
DAAG-1.10/DAAG/data/psid1.RData |binary
DAAG-1.10/DAAG/data/psid2.RData |binary
DAAG-1.10/DAAG/data/psid3.RData |binary
DAAG-1.10/DAAG/data/races2000.rda |binary
DAAG-1.10/DAAG/data/rainforest.rda |binary
DAAG-1.10/DAAG/data/rareplants.rda |binary
DAAG-1.10/DAAG/data/rice.rda |binary
DAAG-1.10/DAAG/data/rockArt.RData |binary
DAAG-1.10/DAAG/data/roller.rda |binary
DAAG-1.10/DAAG/data/science.rda |binary
DAAG-1.10/DAAG/data/seedrates.rda |binary
DAAG-1.10/DAAG/data/socsupport.rda |binary
DAAG-1.10/DAAG/data/softbacks.rda |binary
DAAG-1.10/DAAG/data/sorption.rda |binary
DAAG-1.10/DAAG/data/spam7.rda |binary
DAAG-1.10/DAAG/data/stVincent.rda |binary
DAAG-1.10/DAAG/data/sugar.rda |binary
DAAG-1.10/DAAG/data/tinting.rda |binary
DAAG-1.10/DAAG/data/toycars.rda |binary
DAAG-1.10/DAAG/data/two65.rda |binary
DAAG-1.10/DAAG/data/vince111b.rda |binary
DAAG-1.10/DAAG/data/vlt.rda |binary
DAAG-1.10/DAAG/data/wages1833.rda |binary
DAAG-1.10/DAAG/data/whoops.rda |binary
DAAG-1.10/DAAG/data/worldRecords.RData |binary
DAAG-1.10/DAAG/data/zzDAAGxdb.rda |binary
DAAG-1.10/DAAG/inst/doc/rockArt.pdf |binary
DAAG-1.10/DAAG/man/audists.Rd |only
DAAG-1.10/DAAG/man/aulatlong.Rd |only
DAAG-1.10/DAAG/man/bestsetNoise.Rd | 60 ++++++++++++++++++++++++-------
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DAAG-1.10/DAAG/man/greatLakes.Rd |only
DAAG-1.10/DAAG/man/nassCDS.Rd | 25 +++++++++---
141 files changed, 108 insertions(+), 44 deletions(-)