Title: R interface to the UNU.RAN random variate generators
Diff between Runuran versions 0.18.0 dated 2011-05-19 and 0.19.0 dated 2012-01-31
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators. Thus it allows to build non-uniform
random number generators from quite arbitrary distributions. In
particular, it provides an algorithm for fast numerical
inversion for distribution with given density function. In
addition, the package contains densities, distribution
functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold
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Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vempk_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/vnrou_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen.c | 20
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen.h | 4
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen_source.h | 3
Runuran-0.19.0/Runuran/src/unuran-src/methods/x_gen_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_debug.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_deriv.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_eval.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_init.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_parser.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_scanner.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_stringgen.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/functparser_symbols.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/parser_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/stringparser.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/parser/stringparser_lists.ch | 2
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/bessel_asympt.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/cgamma.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/hypot.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/log1p.c |only
Runuran-0.19.0/Runuran/src/unuran-src/specfunct/unur_specfunct_source.h | 14
Runuran-0.19.0/Runuran/src/unuran-src/tests/countpdf.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/counturn.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/inverror.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/tests/unuran_tests.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_builtin.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_fvoid.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_gsl.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_gslqrng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_prng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_randomshift.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/uniform/urng_rngstreams.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_cookies.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_source.h | 6
Runuran-0.19.0/Runuran/src/unuran-src/unur_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unur_typedefs.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/unuran.h | 61 +
Runuran-0.19.0/Runuran/src/unuran-src/unuran.h.in | 9
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_default.c | 6
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_set.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/urng/urng_unuran.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/debug_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/eigensystem.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/error_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/fmax.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/fmax_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/hooke.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/hooke_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto.c | 35
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/lobatto_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/matrix.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/matrix_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/mrou_rectangle_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/slist_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream.c | 10
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/stream_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/string_struct.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umalloc.c | 13
Runuran-0.19.0/Runuran/src/unuran-src/utils/umalloc_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/umath_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_errno.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp_const_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_fp_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/unur_math_source.h | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/vector.c | 2
Runuran-0.19.0/Runuran/src/unuran-src/utils/vector_source.h | 2
Runuran-0.19.0/Runuran/src/verify.c | 6
Runuran-0.19.0/Runuran/tests/test_ud.R | 5
Runuran-0.19.0/Runuran/tests/test_unuran.R | 17
364 files changed, 1419 insertions(+), 913 deletions(-)
Title: Methods to convert R data to YAML and back
Diff between yaml versions 2.1.2 dated 2012-01-17 and 2.1.3 dated 2012-01-31
Description: This package implements the libyaml YAML parser and
emitter (http://pyyaml.org/wiki/LibYAML) for R.
Author: Jeremy Stephens
Maintainer: Jeremy Stephens
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
src/r-ext.c | 14 ++++++++++++--
src/r-ext.h | 1 +
tests/as_yaml_test.R | 2 +-
5 files changed, 22 insertions(+), 11 deletions(-)
Title: Segmented relationships in regression models
Diff between segmented versions 0.2-8.3 dated 2012-01-16 and 0.2-8.4 dated 2012-01-31
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
DESCRIPTION | 8 +-
MD5 | 36 +++++------
NAMESPACE | 3
NEWS | 6 +
R/broken.line.R | 76 +++++++++++-------------
R/davies.test.r | 6 -
R/intercept.r | 136 +++++++++++++++++++++-----------------------
R/plot.segmented.R | 2
R/print.summary.segmented.R | 4 -
R/seg.glm.fit.r | 7 +-
R/seg.lm.fit.r | 2
R/segmented.glm.R | 10 ++-
R/vcov.segmented.R | 6 -
data/down.rda |binary
data/plant.rda |binary
data/stagnant.rda |binary
man/intercept.Rd | 5 +
man/segmented-package.Rd | 4 -
man/summary.segmented.Rd | 7 ++
19 files changed, 168 insertions(+), 150 deletions(-)
Title: Multi-model inference
Diff between MuMIn versions 1.7.0 dated 2012-01-25 and 1.7.2 dated 2012-01-31
Description: Model selection and model averaging based on information
criteria (AICc and alike).
Author: Kamil Bartoń
Maintainer: Kamil Bartoń
MuMIn-1.7.0/MuMIn/inst/doc |only
MuMIn-1.7.2/MuMIn/DESCRIPTION | 11 -
MuMIn-1.7.2/MuMIn/MD5 | 68 ++++---
MuMIn-1.7.2/MuMIn/NAMESPACE | 14 +
MuMIn-1.7.2/MuMIn/NEWS | 34 ++-
MuMIn-1.7.2/MuMIn/R/AICc.R | 1
MuMIn-1.7.2/MuMIn/R/QAIC.R | 9 -
MuMIn-1.7.2/MuMIn/R/class-unmarkedFit.R | 30 +--
MuMIn-1.7.2/MuMIn/R/coefTable.R | 5
MuMIn-1.7.2/MuMIn/R/dredge.R | 249 +++++------------------------
MuMIn-1.7.2/MuMIn/R/ext.R | 66 +++++++
MuMIn-1.7.2/MuMIn/R/getAllTerms.R | 11 -
MuMIn-1.7.2/MuMIn/R/init.R | 10 -
MuMIn-1.7.2/MuMIn/R/makeArgs.R | 48 +++--
MuMIn-1.7.2/MuMIn/R/misc-utils.R | 15 -
MuMIn-1.7.2/MuMIn/R/model-utils.R | 146 ++++++++---------
MuMIn-1.7.2/MuMIn/R/model.avg.R | 100 +++--------
MuMIn-1.7.2/MuMIn/R/model.selection.R |only
MuMIn-1.7.2/MuMIn/R/pdredge.R | 21 +-
MuMIn-1.7.2/MuMIn/R/r.squared.R | 48 +----
MuMIn-1.7.2/MuMIn/demo/dredge.distsamp.R | 83 ++++-----
MuMIn-1.7.2/MuMIn/demo/pdredge.pcount.R | 130 +++++++--------
MuMIn-1.7.2/MuMIn/inst/TODO | 3
MuMIn-1.7.2/MuMIn/man/AICc.Rd | 6
MuMIn-1.7.2/MuMIn/man/MuMIn-package.Rd | 26 +--
MuMIn-1.7.2/MuMIn/man/dredge.Rd | 35 +---
MuMIn-1.7.2/MuMIn/man/mod.sel.Rd | 4
MuMIn-1.7.2/MuMIn/man/model-utils.Rd | 7
MuMIn-1.7.2/MuMIn/man/model.avg.Rd | 27 ---
MuMIn-1.7.2/MuMIn/man/r.squaredLR.Rd | 16 +
MuMIn-1.7.2/MuMIn/man/supported-classes.Rd |only
MuMIn-1.7.2/MuMIn/tests/classes.R | 173 --------------------
MuMIn-1.7.2/MuMIn/tests/coxme.R | 18 +-
MuMIn-1.7.2/MuMIn/tests/hurdle.R |only
MuMIn-1.7.2/MuMIn/tests/me.R |only
MuMIn-1.7.2/MuMIn/tests/misc-tests.R | 43 -----
MuMIn-1.7.2/MuMIn/tests/unmarked.R | 10 +
37 files changed, 586 insertions(+), 881 deletions(-)
Title: Simulating migration under climate change
Diff between MigClim versions 0.3 dated 2011-12-30 and 1.0 dated 2012-01-31
Description: Functions for simulating species migration under climate
change scenarios.
Author: Robin Engler
Maintainer: Robin Engler
DESCRIPTION | 17 ++--
MD5 | 20 ++--
NAMESPACE | 2
R/MigClim.R | 40 +++++++++
man/MigClim.genClust.Rd |only
man/MigClim.migrate.Rd | 31 ++-----
man/MigClim.plot.Rd | 2
man/MigClim.validate.Rd |only
src/file_io.c | 202 +++++++++++++++++++++++++++++++++++++++++++++++-
src/genclust.c |only
src/migclim.h | 14 ++-
src/migrate.c | 8 -
src/validate.c |only
13 files changed, 291 insertions(+), 45 deletions(-)
Title: Tools and Classes for Statistical Models
Diff between modeltools versions 0.2-18 dated 2011-08-23 and 0.2-19 dated 2012-01-31
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is
likely to change in the future. The documentation is rather
terse, but packages `coin' and `party' have some working
examples. However, if you find the implemented ideas
interesting we would be very interested in a discussion of this
proposal. Contributions are more than welcome!
Author: Torsten Hothorn, Friedrich Leisch, Achim Zeileis
Maintainer: Torsten Hothorn
modeltools-0.2-18/modeltools/CHANGES |only
modeltools-0.2-18/modeltools/inst/CHANGES |only
modeltools-0.2-19/modeltools/DESCRIPTION | 22 +++++++++++-----------
modeltools-0.2-19/modeltools/MD5 | 10 +++++-----
modeltools-0.2-19/modeltools/NAMESPACE | 1 +
modeltools-0.2-19/modeltools/NEWS |only
modeltools-0.2-19/modeltools/R/survReg.R | 5 +++++
modeltools-0.2-19/modeltools/inst/NEWS |only
8 files changed, 22 insertions(+), 16 deletions(-)
Title: GeneticStudio packages for R.
Diff between gstudio versions 0.6 dated 2012-01-12 and 0.8 dated 2012-01-31
Description: This package was created to support population genetics
and landscape genetic courses I teach at Virginia Commonwealth
University. This package contains classes and functions for
the spatial analysis of marker data to include structure
statistics, analyses based upon allele frequencies, and the
Population Graphs network analysis of spatial conditional
genetic covariance.
Author: Rodney J. Dyer
Maintainer: Rodney J. Dyer
gstudio-0.6/gstudio/inst/docs |only
gstudio-0.8/gstudio/.Rinstignore |only
gstudio-0.8/gstudio/.tm_properties | 3
gstudio-0.8/gstudio/ChangeLog | 9 +
gstudio-0.8/gstudio/DESCRIPTION | 8 -
gstudio-0.8/gstudio/MD5 | 73 +++-------------
gstudio-0.8/gstudio/R/Locus-class.R | 11 +-
gstudio-0.8/gstudio/R/population.graph.R | 9 +
gstudio-0.8/gstudio/R/read.population.R | 23 +++--
gstudio-0.8/gstudio/inst/doc |only
gstudio-0.8/gstudio/man/Locus.Rd | 9 +
gstudio-0.8/gstudio/man/read.population.Rd | 16 ++-
gstudio-0.8/gstudio/tests/test.Locus.R | 14 +++
gstudio-0.8/gstudio/tests/test.congruence_probability.R | 2
gstudio-0.8/gstudio/tests/test.genetic_diversity.R | 1
gstudio-0.8/gstudio/tests/test.population_graph.R | 2
gstudio-0.8/gstudio/tests/test.stratum_distance.R | 4
17 files changed, 98 insertions(+), 86 deletions(-)
Title: Forecasting mortality, fertility, migration and population data
Diff between demography versions 1.10 dated 2011-10-18 and 1.11 dated 2012-01-31
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie
Tickle and John Maindonald
Maintainer: Rob J Hyndman
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/demogdata.R | 4 ++--
R/fdm.R | 12 +++++++++---
R/netmigration.R | 1 +
man/forecast.fdm.Rd | 3 ++-
7 files changed, 29 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-29 1.1-0
2009-09-28 1.0-9
2009-01-26 1.0-8
2008-04-27 1.0-7
2008-04-16 1.0-6
2008-04-14 1.0-4
2008-04-01 1.0.2
2008-04-01 1.0-3
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.2-1 dated 2011-04-04 and 0.3-3 dated 2012-01-31
Description: R is very powerfull but not enough for social science
becouse of lack in some functionality for managing survey data
SPSS or Stata provides. Memisc package supplements these,
variable labels, value labels, definable missing values and so
on, but to efficiently work these functions need graphical
interface to overlook data. This package provides such
graphical interface similar to SPSS's Variable View and data
managing system using memisc package as backend. Additionally,
Rz has powerful plot assistant interface based on ggplot2.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
Rz-0.2-1/Rz/R/class.R |only
Rz-0.3-3/Rz/DESCRIPTION | 17 -
Rz-0.3-3/Rz/LICENSE |only
Rz-0.3-3/Rz/MD5 |only
Rz-0.3-3/Rz/NAMESPACE | 1
Rz-0.3-3/Rz/NEWS |only
Rz-0.3-3/Rz/R/RzActionGroup.R |only
Rz-0.3-3/Rz/R/RzData.R |only
Rz-0.3-3/Rz/R/RzDataCollection.R |only
Rz-0.3-3/Rz/R/RzDataHandler.R |only
Rz-0.3-3/Rz/R/RzDataSetIO.R |only
Rz-0.3-3/Rz/R/RzDataView.R |only
Rz-0.3-3/Rz/R/RzFontSettingWidget.R |only
Rz-0.3-3/Rz/R/RzMain.R |only
Rz-0.3-3/Rz/R/RzMenu.R |only
Rz-0.3-3/Rz/R/RzPlot.R |only
Rz-0.3-3/Rz/R/RzPlotFacet.R |only
Rz-0.3-3/Rz/R/RzPlotGeom.R |only
Rz-0.3-3/Rz/R/RzPlotLabel.R |only
Rz-0.3-3/Rz/R/RzPlotPosition.R |only
Rz-0.3-3/Rz/R/RzPlotSave.R |only
Rz-0.3-3/Rz/R/RzPlotStat.R |only
Rz-0.3-3/Rz/R/RzPlotStratum.R |only
Rz-0.3-3/Rz/R/RzSearchEntry.R |only
Rz-0.3-3/Rz/R/RzSettings.R |only
Rz-0.3-3/Rz/R/RzVariableView.R |only
Rz-0.3-3/Rz/R/functions.R | 135 +++++++--
Rz-0.3-3/Rz/R/zzz.R |only
Rz-0.3-3/Rz/Rz.Rproj |only
Rz-0.3-3/Rz/inst/images/table.png |only
Rz-0.3-3/Rz/inst/po/Rz.pot | 456 ++++++++++++++++++++++---------
Rz-0.3-3/Rz/inst/po/ja/LC_MESSAGES/Rz.mo |binary
Rz-0.3-3/Rz/inst/po/ja/LC_MESSAGES/Rz.po | 423 +++++++++++++++++++++++-----
Rz-0.3-3/Rz/inst/themes |only
Rz-0.3-3/Rz/inst/ui/menu.ui | 19 +
Rz-0.3-3/Rz/man/Rz-package.Rd | 3
Rz-0.3-3/Rz/misc.R |only
37 files changed, 825 insertions(+), 229 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-30 1.0
Title: Tools for parsing and generating XML within R and S-Plus.
Diff between XML versions 3.9-2 dated 2012-01-21 and 3.9-4 dated 2012-01-31
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Maintainer: Duncan Temple Lang
Changes | 14 ++++++++++++++
DESCRIPTION | 6 +++---
INSTALL | 2 +-
MD5 | 34 +++++++++++++++++-----------------
R/encoding.R | 3 +++
R/nodeAccessors.R | 16 ++++++++--------
R/saveXML.R | 27 ++++++++++++++++-----------
R/xmlNodes.R | 2 +-
R/xmlTreeParse.R | 10 ++++++++--
man/getEncoding.Rd | 1 +
man/saveXML.Rd | 10 +++++-----
man/xmlValue.Rd | 2 +-
src/DocParse.c | 2 +-
src/HTMLParse.c | 4 +++-
src/Makevars.win | 5 +++--
src/RUtils.c | 4 ++--
src/Utils.h | 2 +-
src/XMLTree.c | 13 ++++++-------
18 files changed, 94 insertions(+), 63 deletions(-)
Title: Streams of random numbers
Diff between rstream versions 1.3.1 dated 2011-05-10 and 1.3.2 dated 2012-01-31
Description: Unified object oriented interface for multiple independent
streams of random numbers from different sources.
Author: Josef Leydold
Maintainer: Josef Leydold
DESCRIPTION | 8 -
MD5 |only
NEWS | 7 +
inst/doc/rstream.pdf |binary
man/rstream-package.Rd | 4
src/R_RNG.c | 2
src/R_RNG.h | 2
src/R_RngStreams.c | 2
src/R_RngStreams.h | 2
src/RngStreams.c | 240 +++++++++++++++++++++++++------------------------
src/RngStreams.h | 13 +-
11 files changed, 145 insertions(+), 135 deletions(-)
Title: Reads mass spectrometry data in mzXML format
Diff between readMzXmlData versions 2.1.1 dated 2012-01-28 and 2.2 dated 2012-01-31
Description: Functions for reading mass spectrometry data in mzXML
format.
Author: Sebastian Gibb, Jarek Tuszynski
Maintainer: Sebastian Gibb
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++------
NEWS | 3 +++
R/base64.R | 9 ++++++++-
R/parseMzXml.R | 12 +++++++++---
man/base64.Rd | 8 +++++---
man/readMzXmlData-package.Rd | 4 ++--
7 files changed, 38 insertions(+), 20 deletions(-)
Title: Hierarchical Models Made Easy with Data Cloning
Diff between dcmle versions 0.1-1 dated 2011-10-18 and 0.1-3 dated 2012-01-31
Description: S4 classes around infrastructure provided by the dclone
package to make package development with data cloning for
hierarchical models easy as a breeze.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 13 +++++++------
MD5 | 18 +++++++++---------
NAMESPACE | 3 ++-
R/dcmle-classes.R | 3 ++-
R/dcmle-methods.R | 9 +++++++--
R/dcmle.R | 21 ++++++++++++++++++---
R/zzz.R | 2 +-
inst/ChangeLog | 14 ++++++++++++++
man/dcmle.Rd | 5 +++--
man/examples.Rd | 2 +-
10 files changed, 64 insertions(+), 26 deletions(-)
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Diff between dclone versions 1.5-0 dated 2011-10-18 and 1.7-0 dated 2012-01-31
Description: Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS. Parallel MCMC computation is
supported and can result in nearly linear speed-up.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 14 ++--
MD5 | 85 +++++++++++++-----------
NAMESPACE | 14 +++-
R/Extract.mcmc.list.dc.R |only
R/codaSamples.R | 2
R/dc.parfit.R | 47 +++++++++++--
R/dcFit.R | 22 +++++-
R/evalParallelArgument.R |only
R/jags.parfit.R | 16 +++-
R/jagsModel.R | 2
R/mclapplySB.R |only
R/parCodaSamples.R | 19 ++++-
R/parJagsModel.R | 18 ++++-
R/parLapplySB.R | 1
R/parLapplySLB.R | 1
R/parListFactories.R | 3
R/parListModules.R | 3
R/parLoadModule.R | 3
R/parSetFactory.R | 3
R/parUnloadModule.R | 3
R/parUpdate.R | 10 ++
R/parallel.inits.R | 2
R/plotClusterSize.R | 13 ++-
R/snowWrapper.R | 140 ++++++++++++++++++++++++-----------------
R/stack.mcmc.list.R |only
R/updated.model.mcmc.list.dc.R |only
R/zzz.R | 5 -
inst/ChangeLog | 52 ++++++++++++++-
man/bugs.fit.Rd | 2
man/clusterSize.Rd | 5 +
man/clusterSplitSB.Rd | 2
man/dc.fit.Rd | 6 +
man/dc.parfit.Rd | 26 ++++++-
man/dclone-package.Rd | 5 -
man/evalParallelArgument.Rd |only
man/jags.parfit.Rd | 11 ++-
man/mclapplySB.Rd |only
man/mcmcapply.Rd | 21 +++++-
man/parCodaSamples.Rd | 21 +++---
man/parJagsModel.Rd | 9 +-
man/parLoadModule.Rd | 2
man/parSetFactory.Rd | 2
man/parUpdate.Rd | 7 +-
man/parallel.inits.Rd | 6 +
man/snowWrapper.Rd | 19 ++++-
man/update.mcmc.list.Rd | 2
man/write.jags.model.Rd | 4 +
47 files changed, 453 insertions(+), 175 deletions(-)
Title: Extension of data.frame for fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns.
Diff between data.table versions 1.7.8 dated 2012-01-25 and 1.7.9 dated 2012-01-31
Description: Enhanced data.frame. Fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns in a short and
flexible syntax. i and j may be expressions of column names
directly, for faster development. Example: X[Y] is a fast join
for large data.
Author: M Dowle, T Short, S Lianoglou
Maintainer: M Dowle
data.table-1.7.8/data.table/R/setattr.R |only
data.table-1.7.9/data.table/DESCRIPTION | 8
data.table-1.7.9/data.table/MD5 | 31 +--
data.table-1.7.9/data.table/NAMESPACE | 2
data.table-1.7.9/data.table/NEWS | 38 ++++
data.table-1.7.9/data.table/R/cedta.R | 6
data.table-1.7.9/data.table/R/data.table.R | 114 +++++++++----
data.table-1.7.9/data.table/R/merge.R | 3
data.table-1.7.9/data.table/R/read.R | 2
data.table-1.7.9/data.table/R/setkey.R | 9 -
data.table-1.7.9/data.table/inst/doc/datatable-faq.pdf |binary
data.table-1.7.9/data.table/inst/doc/datatable-intro.pdf |binary
data.table-1.7.9/data.table/inst/doc/datatable-timings.pdf |binary
data.table-1.7.9/data.table/inst/tests/tests.Rraw | 113 ++++++++----
data.table-1.7.9/data.table/man/setkey.Rd | 51 ++++-
data.table-1.7.9/data.table/src/assign.c | 16 +
data.table-1.7.9/data.table/src/wrappers.c | 5
17 files changed, 278 insertions(+), 120 deletions(-)