Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.4-3 dated 2011-12-19 and 2.4-5 dated 2012-02-02
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes (GPs) with
jumps to the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic GPs, and GP
single-index models. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing,
designed for visualization of tgp-class output. Sensitivity
analysis and multi-resolution models are supported. Sequential
experimental design and adaptive sampling functions are also
provided, including ALM, ALC, and expected improvement. The
latter supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
tgp-2.4-3/tgp/inst/doc/Makefile |only
tgp-2.4-3/tgp/inst/doc/motivate.tex |only
tgp-2.4-3/tgp/inst/doc/motovate_bgp.eps |only
tgp-2.4-3/tgp/inst/doc/motovate_bgp.pdf |only
tgp-2.4-3/tgp/inst/doc/motovate_btgp.eps |only
tgp-2.4-3/tgp/inst/doc/motovate_btgp.pdf |only
tgp-2.4-3/tgp/inst/doc/tgp.bib |only
tgp-2.4-3/tgp/inst/doc/tree.pstex |only
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tgp-2.4-3/tgp/inst/doc/tree_pic.pstex |only
tgp-2.4-3/tgp/inst/doc/tree_pic.pstex_t |only
tgp-2.4-3/tgp/src/gridcalc.c |only
tgp-2.4-3/tgp/src/miwawrapper.c |only
tgp-2.4-3/tgp/src/orschm.c |only
tgp-2.4-3/tgp/src/orthant.c |only
tgp-2.4-3/tgp/src/orthant.h |only
tgp-2.4-5/tgp/ChangeLog | 13 +++
tgp-2.4-5/tgp/DESCRIPTION | 34 ++++----
tgp-2.4-5/tgp/MD5 | 120 ++++++++++++++++---------------
tgp-2.4-5/tgp/NAMESPACE | 22 ++++-
tgp-2.4-5/tgp/R/predict.tgp.R | 4 -
tgp-2.4-5/tgp/demo/optim.R | 2
tgp-2.4-5/tgp/demo/sens.R | 2
tgp-2.4-5/tgp/inst/doc/optim.iRnw | 2
tgp-2.4-5/tgp/inst/doc/sens.iRnw | 2
tgp-2.4-5/tgp/inst/doc/tgp.Rnw | 15 +--
tgp-2.4-5/tgp/inst/doc/tgp.pdf |binary
tgp-2.4-5/tgp/inst/doc/tgp2.Rnw | 10 +-
tgp-2.4-5/tgp/inst/doc/tgp2.pdf |binary
tgp-2.4-5/tgp/inst/doc/traces.iRnw | 2
tgp-2.4-5/tgp/man/sens.Rd | 2
tgp-2.4-5/tgp/predict.tgp.R |only
tgp-2.4-5/tgp/src/all_draws.c | 18 ++--
tgp-2.4-5/tgp/src/base.cc | 1
tgp-2.4-5/tgp/src/corr.cc | 14 +--
tgp-2.4-5/tgp/src/dopt.c | 6 -
tgp-2.4-5/tgp/src/exp.cc | 13 +--
tgp-2.4-5/tgp/src/exp_sep.cc | 17 ++--
tgp-2.4-5/tgp/src/gen_covar.c | 1
tgp-2.4-5/tgp/src/gp.cc | 109 +++++++++++++---------------
tgp-2.4-5/tgp/src/lh.c | 3
tgp-2.4-5/tgp/src/lik_post.c | 7 -
tgp-2.4-5/tgp/src/list.cc | 1
tgp-2.4-5/tgp/src/matern.cc | 19 ++--
tgp-2.4-5/tgp/src/matrix.c | 13 +--
tgp-2.4-5/tgp/src/model.cc | 6 -
tgp-2.4-5/tgp/src/mr_exp_sep.cc | 25 +++---
tgp-2.4-5/tgp/src/mstructs.cc | 2
tgp-2.4-5/tgp/src/params.cc | 17 ++--
tgp-2.4-5/tgp/src/predict.c | 7 -
tgp-2.4-5/tgp/src/predict_linear.c | 1
tgp-2.4-5/tgp/src/rand_draws.c | 3
tgp-2.4-5/tgp/src/rand_pdf.c | 3
tgp-2.4-5/tgp/src/randomkit.c | 2
tgp-2.4-5/tgp/src/rhelp.c | 9 +-
tgp-2.4-5/tgp/src/rhelp.h | 2
tgp-2.4-5/tgp/src/sim.cc | 18 ++--
tgp-2.4-5/tgp/src/temper.cc | 13 +--
tgp-2.4-5/tgp/src/tgp.cc | 42 +++++-----
tgp-2.4-5/tgp/src/tree.cc | 16 +++-
tgp-2.4-5/tgp/vignettes |only
61 files changed, 325 insertions(+), 293 deletions(-)
Title: Serialize R objects to JSON, JavaScript Object Notation
Diff between RJSONIO versions 0.97-0 dated 2012-01-08 and 0.98-0 dated 2012-02-02
Description: This is a package that allows conversion to and from data
in Javascript object notation (JSON) format. This allows R
objects to be inserted into Javascript/ECMAScript/ActionScript
code and allows R programmers to read and convert JSON content
to R objects. This is an alternative to rjson package. That
version was too slow for converting large R objects to JSON and
is not extensible, but a very useful prototype. It is fast for
parsing. This package uses methods, vectorized operations and
C code and callbacks to R functions for deserializing JSON
objects to R. Verison 0.4 of this package uses a new native
parser, implements the transformation code in C and allocates
memory efficiently (rather than concatenating because of event
driven parsing). The result is a significantly faster parsing
of large JSON documents.
Author: Duncan Temple Lang
Maintainer: Duncan Temple Lang
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.aux |only
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.bbl |only
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.blg |only
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.log |only
RJSONIO-0.97-0/RJSONIO/inst/doc/overview.out |only
RJSONIO-0.98-0/RJSONIO/.Rinstignore |only
RJSONIO-0.98-0/RJSONIO/Changes | 10
RJSONIO-0.98-0/RJSONIO/Changes.html | 20
RJSONIO-0.98-0/RJSONIO/Changes.xml | 15
RJSONIO-0.98-0/RJSONIO/DESCRIPTION | 31
RJSONIO-0.98-0/RJSONIO/MD5 | 102
RJSONIO-0.98-0/RJSONIO/R/readJSON.R | 7
RJSONIO-0.98-0/RJSONIO/Web/index.html | 2
RJSONIO-0.98-0/RJSONIO/cleanup | 4
RJSONIO-0.98-0/RJSONIO/configure | 2976 ++++------
RJSONIO-0.98-0/RJSONIO/configure.in | 22
RJSONIO-0.98-0/RJSONIO/inst/sampleData/usaPolygons.as | 2
RJSONIO-0.98-0/RJSONIO/src/ConvertUTF.c | 4
RJSONIO-0.98-0/RJSONIO/src/Makevars | 3
RJSONIO-0.98-0/RJSONIO/src/Makevars.in | 3
RJSONIO-0.98-0/RJSONIO/src/Makevars.win | 2
RJSONIO-0.98-0/RJSONIO/src/RJSON.c | 4
RJSONIO-0.98-0/RJSONIO/src/libjson/JSONOptions.h | 70
RJSONIO-0.98-0/RJSONIO/src/libjson/License.txt |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONAllocator.cpp |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONAllocator.h |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONChildren.cpp | 8
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONChildren.h | 88
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDebug.cpp | 6
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDebug.h | 4
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs.h | 43
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs/GNU_C.h | 6
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONDefs/Strings_Defs.h | 2
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONGlobals.h |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONIterators.cpp | 52
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONMemory.cpp | 151
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONMemory.h | 49
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONMemoryPool.h |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode.cpp | 234
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode.h | 468 -
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONNode_Mutex.cpp | 94
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONPreparse.cpp |only
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RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONSingleton.h |only
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONStream.cpp | 53
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONStream.h | 77
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONValidator.cpp | 50
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONValidator.h | 25
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWorker.cpp | 301 -
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWorker.h | 12
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSONWriter.cpp | 166
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/JSON_Base64.cpp | 30
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/NumberToString.h | 156
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/internalJSONNode.cpp | 444 +
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/internalJSONNode.h | 268
RJSONIO-0.98-0/RJSONIO/src/libjson/Source/libjson.cpp | 214
RJSONIO-0.98-0/RJSONIO/src/libjson/libjson.h | 136
RJSONIO-0.98-0/RJSONIO/src/libjson/makefile | 364 -
RJSONIO-0.98-0/RJSONIO/src/rlibjson.c | 95
RJSONIO-0.98-0/RJSONIO/testStream.R |only
60 files changed, 3985 insertions(+), 2888 deletions(-)
Title: Interface between GRASS 6+ geographical information system and R
Diff between spgrass6 versions 0.7-8 dated 2012-02-01 and 0.7-9 dated 2012-02-02
Description: Interpreted interface between GRASS 6+ geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Author: Roger Bivand
Maintainer: Roger Bivand
ChangeLog | 15 +++++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/bin_link.R | 2 +-
inst/ChangeLog | 15 +++++++++++++++
inst/doc/spgrass6_0.3.pdf |binary
6 files changed, 40 insertions(+), 10 deletions(-)
Title: Soft classification performance measures
Diff between softclassval versions 0.5-20110804 dated 2011-08-12 and 0.5-20120202 dated 2012-02-02
Description: Extension of sensitivity, specificity, positive and
negative predictive value to continuous predicted and reference
memberships in [0, 1]
Author: C. Beleites
Maintainer: C. Beleites
softclassval-0.5-20110804/softclassval/man/softclassval-dash-package.Rd |only
softclassval-0.5-20110804/softclassval/man/softclassval-dot-unittest.Rd |only
softclassval-0.5-20120202/softclassval/DESCRIPTION | 29 -
softclassval-0.5-20120202/softclassval/MD5 | 48 +-
softclassval-0.5-20120202/softclassval/NAMESPACE | 28 -
softclassval-0.5-20120202/softclassval/R/dev.R | 29 +
softclassval-0.5-20120202/softclassval/R/factor2matrix.R |only
softclassval-0.5-20120202/softclassval/R/hardclasses.R | 22 -
softclassval-0.5-20120202/softclassval/R/init.R | 16
softclassval-0.5-20120202/softclassval/R/make01.R |only
softclassval-0.5-20120202/softclassval/R/nsamples.R | 3
softclassval-0.5-20120202/softclassval/R/operators.R | 116 ++++---
softclassval-0.5-20120202/softclassval/R/performance.R | 89 +++--
softclassval-0.5-20120202/softclassval/R/postproc.R | 2
softclassval-0.5-20120202/softclassval/R/softclassval.R | 59 ---
softclassval-0.5-20120202/softclassval/R/validate.R | 63 +++
softclassval-0.5-20120202/softclassval/inst |only
softclassval-0.5-20120202/softclassval/man/checkrp.Rd |only
softclassval-0.5-20120202/softclassval/man/dev.Rd | 35 +-
softclassval-0.5-20120202/softclassval/man/factor2matrix.Rd |only
softclassval-0.5-20120202/softclassval/man/hard.Rd | 35 +-
softclassval-0.5-20120202/softclassval/man/hardclasses.Rd | 44 +-
softclassval-0.5-20120202/softclassval/man/nsamples.Rd | 43 +-
softclassval-0.5-20120202/softclassval/man/operators.Rd | 162 +++++-----
softclassval-0.5-20120202/softclassval/man/performance.Rd | 120 ++++---
softclassval-0.5-20120202/softclassval/man/postproc.Rd | 44 +-
softclassval-0.5-20120202/softclassval/man/softclassval-package.Rd |only
softclassval-0.5-20120202/softclassval/man/softclassval.unittest.Rd |only
softclassval-0.5-20120202/softclassval/tests/tests.R | 1
29 files changed, 600 insertions(+), 388 deletions(-)
Title: Fusing R and OpenBugs
Diff between rbugs versions 0.5-3 dated 2011-11-08 and 0.5-4 dated 2012-02-02
Description: Functions to prepare files needed for running BUGS in
batch-mode, and running BUGS from R. Support for Linux and
Windows systems with OpenBugs is emphasized.
Author: Jun Yan
Maintainer: Marcos Prates
ChangeLog | 7 +++++++
DESCRIPTION | 13 +++++++------
MD5 | 6 +++---
R/rbugs.R | 2 +-
4 files changed, 18 insertions(+), 10 deletions(-)
Title: Functions to generate fMRI data including activated data, noise
data and resting state data.
Diff between neuRosim versions 0.2-8 dated 2011-10-24 and 0.2-10 dated 2012-02-02
Description: The package allows users to generate fMRI time series or
4D data. Some high-level functions are created for fast data
generation with only a few arguments and a diversity of
functions to define activation and noise. For more advanced
users it is possible to use the low-level functions and
manipulate the arguments.
Author: Marijke Welvaert with contributions from Joke Durnez, Beatrijs
Moerkerke, Yves Rosseel and Geert Verdoolaege
Maintainer: Marijke Welvaert
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/simTSrestingstate.R | 2 +-
R/simVOLfmri.R | 16 ++++++++++++----
R/specifydesign.R | 1 +
man/neuRosim-package.Rd | 4 ++--
6 files changed, 25 insertions(+), 16 deletions(-)
Title: Latent Variable Analysis
Diff between lavaan versions 0.4-11 dated 2011-12-21 and 0.4-12 dated 2012-02-02
Description: Fit a variety of latent variable models, including
confirmatory factor analysis, structural equation modeling and
latent growth curve models.
Author: Yves Rosseel
Maintainer: Yves Rosseel
DESCRIPTION | 16 -
MD5 | 55 +++--
NAMESPACE | 6
R/00class.R | 1
R/02lavaanUser.R | 26 +-
R/03lavaanSample.R | 7
R/06lavaanEstimate.R | 38 ++-
R/07lavaanVcov.R | 44 ++--
R/08lavaanTest.R | 26 +-
R/09lavaanFit.R | 2
R/10lavaan-methods.R | 21 +-
R/InformativeTesting.R |only
R/bootstrap.R | 400 +++++++++++++++++++++++------------------
R/bootstrapLRT.R | 284 +++++++++++++++++------------
R/lavaan.R | 223 ++++++++++++++++++----
R/modification.R | 6
R/nlminb.constr.R | 2
R/objective.R | 12 +
R/prelis.R | 4
R/representation.LISREL.R | 21 +-
R/residuals.R | 20 +-
R/simulate.R | 166 ++++++++++++++++-
R/utils-constraints.R |only
R/utils-graphics.R |only
R/utils-user.R | 73 ++++---
man/InformativeTesting.Rd |only
man/bootstrap.Rd | 51 ++++-
man/lavaan-class.Rd | 19 +
man/lavaan.Rd | 13 +
man/plot.InformativeTesting.Rd |only
man/simulateData.Rd | 11 -
31 files changed, 1047 insertions(+), 500 deletions(-)
Title: Forecasting functions for time series
Diff between forecast versions 3.16 dated 2011-12-24 and 3.17 dated 2012-02-02
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 6 +
DESCRIPTION | 17 ++--
MD5 | 13 +--
R/arima.R | 79 ++++++++++++++++----
R/lm.R | 5 +
R/newarima2.R | 208 ++++++++++++++++++++++++++++--------------------------
R/whichmodels.R |only
man/auto.arima.Rd | 6 +
8 files changed, 204 insertions(+), 130 deletions(-)
More information about DiscreteLaplace at CRAN
Permanent link
Title: Convenience functions for arrays
Diff between arrayhelpers versions 0.75-20111128 dated 2011-11-29 and 0.75-20120202 dated 2012-02-02
Description: Some convenient functions to work with arrays
Author: C. Beleites
Maintainer: C. Beleites
DESCRIPTION | 12 ++++++------
MD5 | 16 +++++++++-------
NAMESPACE | 1 +
R/array2df.R | 1 +
R/colSums.R | 24 ++++++++++++------------
R/ndim.R | 2 ++
R/rowsum.R | 2 +-
R/slice.R |only
man/ndim.Rd | 5 +++++
man/slice.Rd |only
10 files changed, 37 insertions(+), 26 deletions(-)
Title: Analysis of geostatistical data
Diff between geoR versions 1.7-1 dated 2011-11-11 and 1.7-2 dated 2012-02-02
Description: Geostatistical analysis including traditional,
likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr
Maintainer: Paulo J. Ribeiro Jr
DESCRIPTION | 15 ++++++++-------
MD5 | 50 +++++++++++++++++++++++++-------------------------
NAMESPACE | 1 +
R/auxiliar.R | 4 +++-
data/Ksat.rda |binary
data/SIC.rda |binary
data/ca20.rda |binary
data/camg.rda |binary
data/elevation.rda |binary
data/gambia.rda |binary
data/head.rda |binary
data/hoef.rda |binary
data/isaaks.rda |binary
data/kattegat.rda |binary
data/landim1.rda |binary
data/parana.rda |binary
data/s100.rda |binary
data/s121.rda |binary
data/s256i.rda |binary
data/soil250.rda |binary
data/soja98.rda |binary
data/tce.rda |binary
data/wo.rda |binary
data/wolfcamp.rda |binary
data/wrc.rda |binary
inst/CHANGES | 15 +++++++++++++--
26 files changed, 50 insertions(+), 35 deletions(-)
Title: Exact Calculation of WMTR
Diff between WMTregions versions 3.1.0.2 dated 2011-11-02 and 3.2.4 dated 2012-02-02
Description: R realization of an exact algorithm for calculating the
weighted-mean trimmed regions
Author: Pavel Bazovkin
Maintainer: Pavel Bazovkin
WMTregions-3.1.0.2/WMTregions/R/WMTregions-internal.R |only
WMTregions-3.2.4/WMTregions/DESCRIPTION | 14 +--
WMTregions-3.2.4/WMTregions/MD5 | 30 +++----
WMTregions-3.2.4/WMTregions/NAMESPACE |only
WMTregions-3.2.4/WMTregions/R/WMTR.R | 2
WMTregions-3.2.4/WMTregions/R/showWMTR.R | 3
WMTregions-3.2.4/WMTregions/R/visualWMTR.R | 2
WMTregions-3.2.4/WMTregions/data |only
WMTregions-3.2.4/WMTregions/man/Indices_0809.Rd |only
WMTregions-3.2.4/WMTregions/man/WMTR.Rd | 6 -
WMTregions-3.2.4/WMTregions/man/WMTregions-package.Rd | 10 +-
WMTregions-3.2.4/WMTregions/man/generTRsample.Rd | 4
WMTregions-3.2.4/WMTregions/man/loadWMTR.Rd | 9 --
WMTregions-3.2.4/WMTregions/man/pointinTR.Rd | 8 -
WMTregions-3.2.4/WMTregions/man/showWMTR.Rd | 4
WMTregions-3.2.4/WMTregions/man/visualWMTR.Rd | 6 -
WMTregions-3.2.4/WMTregions/src/Agents.cpp | 75 ++++++++++--------
WMTregions-3.2.4/WMTregions/src/Objects.cpp | 40 ++++-----
18 files changed, 114 insertions(+), 99 deletions(-)
Title: Parallel Computing Toolset for Genome-Wide Association Studies
(GWAS)
Diff between SNPRelate versions 0.9.1 dated 2011-08-13 and 0.9.2 dated 2012-02-02
Description: A high-performance computing toolset for relatedness and
principal component analysis in GWAS
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 16
MD5 | 59
NAMESPACE |only
R/main.r | 355 +
data/hapmap.geno.RData |binary
inst/extdata/hapmap.geno.gds |binary
inst/extdata/plinkhapmap.bed |binary
inst/extdata/plinkhapmap.bim |10345 ++++++++++++++++++--------------------
inst/extdata/plinkhapmap.fam | 549 +-
man/SNPRelate-package.Rd | 9
man/snpgdsCreateGenoSet.Rd | 13
man/snpgdsExampleFileName.Rd | 4
man/snpgdsIBDMLE.Rd | 15
man/snpgdsIBDMLELogLik.Rd | 10
man/snpgdsIBDMoM.Rd | 1
man/snpgdsIBS.Rd | 13
man/snpgdsIBSNum.Rd | 1
man/snpgdsLDMat.Rd | 6
man/snpgdsLDpair.Rd | 6
man/snpgdsLDpruning.Rd | 15
man/snpgdsPCA.Rd | 10
man/snpgdsPCASNPLoading.Rd | 2
man/snpgdsPosition.Rd |only
man/snpgdsSummary.Rd |only
src/CoreArray.src/CoreGDSLink.hpp | 1
src/CoreArray.src/dGenGWAS.cpp | 219
src/CoreArray.src/dGenGWAS.hpp | 73
src/CoreArray.src/genIBD.cpp | 28
src/CoreArray.src/genIBS.cpp | 137
src/CoreArray.src/genLD.cpp | 20
src/CoreArray.src/genPCA.cpp | 448 -
src/main.cpp | 209
32 files changed, 6375 insertions(+), 6189 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-7 dated 2011-11-11 and 0.9-8 dated 2012-02-02
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and
available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
RVAideMemoire-0.9-7/RVAideMemoire/R/fisher.medtest.R |only
RVAideMemoire-0.9-7/RVAideMemoire/R/print.fisher.medtest.R |only
RVAideMemoire-0.9-7/RVAideMemoire/man/fisher.medtest.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/DESCRIPTION | 18
RVAideMemoire-0.9-8/RVAideMemoire/MD5 | 203 ++---
RVAideMemoire-0.9-8/RVAideMemoire/NAMESPACE | 16
RVAideMemoire-0.9-8/RVAideMemoire/R/adjust.esticon.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/bootstrap.R | 16
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.exp.R | 18
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.multcomp.R | 24
RVAideMemoire-0.9-8/RVAideMemoire/R/chisq.theo.multcomp.R | 23
RVAideMemoire-0.9-8/RVAideMemoire/R/cochran.qtest.R | 68 -
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.2comp.R | 60 -
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.conf.R | 24
RVAideMemoire-0.9-8/RVAideMemoire/R/cor.multcomp.R | 86 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/cox.resid.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/cramer.coeff.R | 37
RVAideMemoire-0.9-8/RVAideMemoire/R/cv.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/fisher.multcomp.R | 37
RVAideMemoire-0.9-8/RVAideMemoire/R/ind.contrib.R | 47 -
RVAideMemoire-0.9-8/RVAideMemoire/R/least.rect.R | 74 -
RVAideMemoire-0.9-8/RVAideMemoire/R/logis.fit.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/lr.multcomp.R | 79 --
RVAideMemoire-0.9-8/RVAideMemoire/R/mod.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.1way.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayA.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayB.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayC.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.2wayD.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.anova.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.bartlett.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.kruskal.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.t.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.var.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/perm.wilcox.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/plotresid.R | 41 -
RVAideMemoire-0.9-8/RVAideMemoire/R/plotsurvivors.R | 28
RVAideMemoire-0.9-8/RVAideMemoire/R/print.adjust.esticon.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.bootstrap.R | 3
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.exp.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.multcomp.R | 5
RVAideMemoire-0.9-8/RVAideMemoire/R/print.chisq.theo.multcomp.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cochran.qtest.R | 10
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.2comp.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.conf.R | 5
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cor.multcomp.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/print.cramer.coeff.R | 3
RVAideMemoire-0.9-8/RVAideMemoire/R/print.fisher.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.least.rect.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.lr.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.anova.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.bartlett.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.kruskal.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.t.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.var.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.perm.wilcox.test.R |only
RVAideMemoire-0.9-8/RVAideMemoire/R/print.prop.multcomp.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.reg.intcomp.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/print.reg.slpcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.spearman.ci.R | 4
RVAideMemoire-0.9-8/RVAideMemoire/R/print.surv.multcomp.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/print.wilcox.paired.multcomp.R | 8
RVAideMemoire-0.9-8/RVAideMemoire/R/print.wilcox.signtest.R | 14
RVAideMemoire-0.9-8/RVAideMemoire/R/prop.multcomp.R | 20
RVAideMemoire-0.9-8/RVAideMemoire/R/psignif.R | 17
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.ci.R | 32
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.intcomp.R | 93 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/reg.slpcomp.R | 65 -
RVAideMemoire-0.9-8/RVAideMemoire/R/scat.mix.categorical.R | 18
RVAideMemoire-0.9-8/RVAideMemoire/R/scat.mix.numeric.R | 6
RVAideMemoire-0.9-8/RVAideMemoire/R/se.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/seq2.R | 2
RVAideMemoire-0.9-8/RVAideMemoire/R/spearman.ci.R | 29
RVAideMemoire-0.9-8/RVAideMemoire/R/surv.multcomp.R | 109 +-
RVAideMemoire-0.9-8/RVAideMemoire/R/wilcox.paired.multcomp.R | 53 -
RVAideMemoire-0.9-8/RVAideMemoire/R/wilcox.signtest.R | 42 -
RVAideMemoire-0.9-8/RVAideMemoire/R/zzz.R |only
RVAideMemoire-0.9-8/RVAideMemoire/RVAideMemoire-Ex.R | 381 ++++++----
RVAideMemoire-0.9-8/RVAideMemoire/man/RVAideMemoire-package.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/adjust.esticon.Rd | 2
RVAideMemoire-0.9-8/RVAideMemoire/man/bootstrap.Rd | 2
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.exp.Rd | 12
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.multcomp.Rd | 10
RVAideMemoire-0.9-8/RVAideMemoire/man/chisq.theo.multcomp.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/cochran.qtest.Rd | 21
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.2comp.Rd | 16
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.conf.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/cor.multcomp.Rd | 32
RVAideMemoire-0.9-8/RVAideMemoire/man/cox.resid.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/cramer.coeff.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/fisher.multcomp.Rd | 12
RVAideMemoire-0.9-8/RVAideMemoire/man/ind.contrib.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/least.rect.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/logis.fit.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/logis.noise.Rd | 10
RVAideMemoire-0.9-8/RVAideMemoire/man/lr.multcomp.Rd | 17
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.anova.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.bartlett.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.kruskal.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.t.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.var.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/perm.wilcox.test.Rd |only
RVAideMemoire-0.9-8/RVAideMemoire/man/plotresid.Rd | 7
RVAideMemoire-0.9-8/RVAideMemoire/man/plotsurvivors.Rd | 5
RVAideMemoire-0.9-8/RVAideMemoire/man/print.bootstrap.Rd | 9
RVAideMemoire-0.9-8/RVAideMemoire/man/prop.multcomp.Rd | 14
RVAideMemoire-0.9-8/RVAideMemoire/man/psignif.Rd | 4
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.ci.Rd | 8
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.intcomp.Rd | 21
RVAideMemoire-0.9-8/RVAideMemoire/man/reg.slpcomp.Rd | 19
RVAideMemoire-0.9-8/RVAideMemoire/man/scat.mix.categorical.Rd | 22
RVAideMemoire-0.9-8/RVAideMemoire/man/scat.mix.numeric.Rd | 22
RVAideMemoire-0.9-8/RVAideMemoire/man/spearman.ci.Rd | 6
RVAideMemoire-0.9-8/RVAideMemoire/man/surv.multcomp.Rd | 27
RVAideMemoire-0.9-8/RVAideMemoire/man/wilcox.paired.multcomp.Rd | 47 -
RVAideMemoire-0.9-8/RVAideMemoire/man/wilcox.signtest.Rd | 13
116 files changed, 1242 insertions(+), 1120 deletions(-)
Title: OCI based Oracle database interface for R
Diff between ROracle versions 0.5-12 dated 2011-09-15 and 1.1-1 dated 2012-02-02
Description: Oracle database interface (DBI) driver for R. This is a
DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Denis Mukhin
ROracle-0.5-12/ROracle/R/OraSupport.R |only
ROracle-0.5-12/ROracle/R/Oracle.R |only
ROracle-0.5-12/ROracle/R/S4R.R |only
ROracle-0.5-12/ROracle/R/dbObjectId.R |only
ROracle-0.5-12/ROracle/configure.in |only
ROracle-0.5-12/ROracle/inst/INSTALL |only
ROracle-0.5-12/ROracle/inst/LGPL |only
ROracle-0.5-12/ROracle/inst/NEWS |only
ROracle-0.5-12/ROracle/inst/README |only
ROracle-0.5-12/ROracle/inst/README.Oracle9 |only
ROracle-0.5-12/ROracle/inst/README.client |only
ROracle-0.5-12/ROracle/inst/README.macOSX |only
ROracle-0.5-12/ROracle/inst/README.windows |only
ROracle-0.5-12/ROracle/inst/TODO |only
ROracle-0.5-12/ROracle/man/DBIPreparedStatement-class.Rd |only
ROracle-0.5-12/ROracle/man/OraObject-class.Rd |only
ROracle-0.5-12/ROracle/man/OraPreparedStatement-class.Rd |only
ROracle-0.5-12/ROracle/man/S4R.Rd |only
ROracle-0.5-12/ROracle/man/dbDataType-methods.Rd |only
ROracle-0.5-12/ROracle/man/dbListTables-methods.Rd |only
ROracle-0.5-12/ROracle/man/dbObjectId-class.Rd |only
ROracle-0.5-12/ROracle/man/dbPrepareStatement-methods.Rd |only
ROracle-0.5-12/ROracle/man/isIdCurrent.Rd |only
ROracle-0.5-12/ROracle/man/make.db.names-methods.Rd |only
ROracle-0.5-12/ROracle/man/oraParseConParams.Rd |only
ROracle-0.5-12/ROracle/man/oraSupport.Rd |only
ROracle-0.5-12/ROracle/man/safe.write.Rd |only
ROracle-0.5-12/ROracle/src/Makefile.in |only
ROracle-0.5-12/ROracle/src/Makefile.win |only
ROracle-0.5-12/ROracle/src/RS-DBI.c |only
ROracle-0.5-12/ROracle/src/RS-DBI.h |only
ROracle-0.5-12/ROracle/src/RS-Oracle.h |only
ROracle-0.5-12/ROracle/src/RS-Oracle.pc |only
ROracle-0.5-12/ROracle/src/S4R.h |only
ROracle-1.1-1/ROracle/DESCRIPTION | 28
ROracle-1.1-1/ROracle/INSTALL |only
ROracle-1.1-1/ROracle/MD5 | 87
ROracle-1.1-1/ROracle/NAMESPACE | 43
ROracle-1.1-1/ROracle/NEWS |only
ROracle-1.1-1/ROracle/R/dbi.R |only
ROracle-1.1-1/ROracle/R/oci.R |only
ROracle-1.1-1/ROracle/R/zzz.R | 31
ROracle-1.1-1/ROracle/cleanup |only
ROracle-1.1-1/ROracle/configure | 1647 ++-------------
ROracle-1.1-1/ROracle/configure.ac |only
ROracle-1.1-1/ROracle/configure.win |only
ROracle-1.1-1/ROracle/inst/Copyrights | 7
ROracle-1.1-1/ROracle/inst/THANKS | 11
ROracle-1.1-1/ROracle/man/OraConnection-class.Rd | 38
ROracle-1.1-1/ROracle/man/OraDriver-class.Rd | 21
ROracle-1.1-1/ROracle/man/OraResult-class.Rd | 32
ROracle-1.1-1/ROracle/man/Oracle.Rd | 221 --
ROracle-1.1-1/ROracle/man/dbCallProc-methods.Rd | 7
ROracle-1.1-1/ROracle/man/dbCommit-methods.Rd | 19
ROracle-1.1-1/ROracle/man/dbConnect-methods.Rd | 59
ROracle-1.1-1/ROracle/man/dbDriver-methods.Rd | 27
ROracle-1.1-1/ROracle/man/dbGetInfo-methods.Rd | 34
ROracle-1.1-1/ROracle/man/dbListConnections-methods.Rd |only
ROracle-1.1-1/ROracle/man/dbReadTable-methods.Rd | 125 -
ROracle-1.1-1/ROracle/man/dbSendQuery-methods.Rd | 19
ROracle-1.1-1/ROracle/man/dbSetDataMappings-methods.Rd | 13
ROracle-1.1-1/ROracle/man/fetch-methods.Rd | 29
ROracle-1.1-1/ROracle/man/summary-methods.Rd | 30
ROracle-1.1-1/ROracle/src/Makevars.in | 4
ROracle-1.1-1/ROracle/src/Makevars.win |only
ROracle-1.1-1/ROracle/src/oci |only
ROracle-1.1-1/ROracle/src/roci.c |only
67 files changed, 622 insertions(+), 1910 deletions(-)
Title: R interface to RNG with multiple streams
Diff between rlecuyer versions 0.3-2 dated 2012-01-26 and 0.3-3 dated 2012-02-02
Description: Provides an interface to the C implementation of the
random number generator with multiple independent streams
developed by L'Ecuyer et al (2002). The main purpose of this
package is to enable the use of this random number generator in
parallel R applications.
Author: Hana Sevcikova
Maintainer: Hana Sevcikova
ChangeLog | 7 +++++--
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/zzz.R | 4 ++--
4 files changed, 14 insertions(+), 11 deletions(-)
Title: Fisher-Wright Population Simulation
Diff between fwsim versions 0.1-2 dated 2012-01-30 and 0.2-1 dated 2012-02-02
Description: Simulates a population under the Fisher-Wright model with
a stepwise neutral mutation process. The population sizes are
random Poisson distributed and different kinds of population
growth are supported. It is possible to specify locus and
direction (in terms of upwards and downwards mutation rate)
specific mutation rate.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
DESCRIPTION | 17 +++--
MD5 | 29 +++++----
NEWS |only
R/fwsim.R | 33 +++++++++-
man/fwsim.Rd | 44 ++++++++------
src/clean.c | 3
src/common.h | 10 +++
src/fwsim.c | 174 ++++++++++++++++++++++++++++++++++++++-------------------
src/fwsim.h | 5 +
src/kdtree.c | 11 ++-
src/kdtree.h | 2
src/mutation.c |only
src/mutation.h |only
src/print.c | 92 ++++++++++++++++++++++++++++++
src/print.h | 4 +
src/sim.c | 173 ++++++++++++++++++++++++++++++++++++++------------------
src/sim.h | 4 -
17 files changed, 443 insertions(+), 158 deletions(-)
Title: An R package for the analysis of epidemiological data
Diff between epiR versions 0.9-36 dated 2012-01-24 and 0.9-38 dated 2012-02-02
Description: An R package for the analysis of epidemiological data.
Contains functions for directly and indirectly adjusting
measures of disease frequency, quantifying measures of
association on the basis of single or multiple strata of count
data presented in a contingency table, and computing confidence
intervals around incidence risk and incidence rate estimates.
Miscellaneous functions for use in meta-analysis, diagnostic
test interpretation, and sample size calculations.
Author: Mark Stevenson
Maintainer: Mark Stevenson
epiR-0.9-36/epiR/R/epi.2by2.R |only
epiR-0.9-38/epiR/DESCRIPTION | 29 +++++++++++++-------------
epiR-0.9-38/epiR/MD5 | 18 ++++++++--------
epiR-0.9-38/epiR/R/epi.2by2.r |only
epiR-0.9-38/epiR/R/epi.about.R | 8 +++++--
epiR-0.9-38/epiR/R/epi.conf.R | 6 ++---
epiR-0.9-38/epiR/doc/epiR.pdf |binary
epiR-0.9-38/epiR/man/epi.2by2.Rd | 39 +++++++++++++++++++++---------------
epiR-0.9-38/epiR/man/epi.about.Rd | 2 -
epiR-0.9-38/epiR/man/epi.bohning.Rd | 2 -
epiR-0.9-38/epiR/man/epi.conf.Rd | 19 +++++++++++++----
11 files changed, 73 insertions(+), 50 deletions(-)