Title: Vector Generalized Linear and Additive Models
Diff between VGAM versions 0.8-4 dated 2011-11-04 and 0.8-4.1 dated 2012-02-18
Description: Vector generalized linear and additive models, and
associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs,
Reduced-Rank VGAMs). This package fits many models and
distribution by maximum likelihood estimation (MLE) or
penalized MLE. Also fits constrained ordination models in
ecology.
Author: Thomas W. Yee
Maintainer: Thomas Yee
VGAM-0.8-4.1/VGAM/DESCRIPTION | 17 +++++++++--------
VGAM-0.8-4.1/VGAM/MD5 | 6 ++----
VGAM-0.8-4.1/VGAM/NAMESPACE | 10 +---------
VGAM-0.8-4/VGAM/inst/doc/jss.bst |only
VGAM-0.8-4/VGAM/inst/doc/jss.cls |only
5 files changed, 12 insertions(+), 21 deletions(-)
Title: Pretty Heatmaps
Diff between pheatmap versions 0.5.1 dated 2011-07-04 and 0.6.0 dated 2012-02-18
Description: The package for drawing pretty heatmaps in R. The ordinary
heatmap function in R has several drawbacks, when it comes to
producing publication quality heatmaps. It is hard to produce
pictures with consistent text, cell and overall sizes and
shapes. The function pheatmap tries to alleviate the problems
by offering more fine grained control over heatmap dimensions
and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde
DESCRIPTION | 20 +++++-----
MD5 |only
R/pheatmap.r | 109 ++++++++++++++++++++++++++++++++++++++++++--------------
man/pheatmap.Rd | 30 ++++++++++-----
run_roxygen.r | 4 +-
5 files changed, 115 insertions(+), 48 deletions(-)
Title: Parametric bootstrap and Kenward Roger based methods for mixed
model comparison
Diff between pbkrtest versions 0.2.1 dated 2012-01-18 and 0.3.0 dated 2012-02-18
Description: Test in linear mixed effects models based on parametric
bootstrap approaches and Kenward-Roger modification of F-tests
Author: Ulrich Halekoh
Maintainer: Søren Højsgaard
ChangeLog | 8
DESCRIPTION | 6
MD5 | 21 +-
R/KenRog-General.R | 87 +++++-----
R/KenRog-linearAlgebra.R | 63 ++++---
R/KenRog-modcomp_init.R | 28 +--
R/KenRog-utils.R | 24 ++
R/PB_ParmBoot.R | 386 ++++++++++++++++++++++++++++++++---------------
man/PB_PBmodcomp.Rd | 29 ++-
man/PB_PBrefdist.Rd | 7
man/vcovAdj.Rd |only
pbkrtest-Ex.R | 33 +++-
12 files changed, 450 insertions(+), 242 deletions(-)
Title: Model species distributions by estimating the probability of
occurrence using presence-only data.
Diff between maxlike versions 0.1-0 dated 2011-12-21 and 0.1-1 dated 2012-02-18
Description: Provides a likelihood-based approach to modeling species
distributions using presence-only data. In contrast to the
popular software program MAXENT, this approach yields estimates
of the probability of occurrence, which is a natural descriptor
of a species' distribution.
Author: Richard Chandler and Andy Royle
Maintainer: Richard Chandler
DESCRIPTION | 19 ++++--
MD5 | 18 +++---
NAMESPACE | 1
R/fmMethods.R | 28 +++++++++-
R/maxlike.R | 48 ++++++++++++++---
data/carw.rda |only
inst/test/runit.maxlike.R | 20 ++++++-
man/MaungaWhau.Rd | 12 ++--
man/carw.Rd |only
man/maxlike-package.Rd | 15 ++---
man/maxlike.Rd | 126 ++++++++++++++++++++++++++++++++--------------
11 files changed, 212 insertions(+), 75 deletions(-)
Title: Graphical Independence Networks
Diff between gRain versions 0.8.12 dated 2012-01-18 and 0.8.13 dated 2012-02-18
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++
DESCRIPTION | 8 +--
MD5 | 16 +++---
R/Finding.R | 123 +++++++++++++++++++++++++----------------------
R/SimulateArray.R | 4 -
R/loadSaveHuginNet.R | 2
R/predict.R | 2
R/utilities.R | 2
inst/doc/gRain-intro.pdf |binary
9 files changed, 91 insertions(+), 72 deletions(-)
Title: Epidemiological calculator
Diff between epicalc versions 2.14.1.5 dated 2012-02-12 and 2.14.1.6 dated 2012-02-18
Description: Functions making R easy for epidemiological calculation.
Author: Virasakdi Chongsuvivatwong
Maintainer: Virasakdi Chongsuvivatwong
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/epicalc.R | 3 ---
3 files changed, 6 insertions(+), 9 deletions(-)
Title: R Emulation of Berkeley Earth Surface Temperature
Diff between BerkeleyEarth versions 1.0 dated 2012-02-09 and 1.1 dated 2012-02-18
Description: A selection of functioned designed to emulate the Berkeley
Earth Surface Temperature Project. Version 1 includes only
those function to import data.
Author: Steven Mosher
Maintainer: Steven Mosher
BerkeleyEarth-1.0/BerkeleyEarth/R/readBestData.R |only
BerkeleyEarth-1.0/BerkeleyEarth/man/readBestData.Rd |only
BerkeleyEarth-1.1/BerkeleyEarth/DESCRIPTION | 8 +++----
BerkeleyEarth-1.1/BerkeleyEarth/MD5 | 12 +++++++----
BerkeleyEarth-1.1/BerkeleyEarth/R/readAsArray.R |only
BerkeleyEarth-1.1/BerkeleyEarth/R/readBerkeleyData.R |only
BerkeleyEarth-1.1/BerkeleyEarth/R/readBerkeleyTemp.R |only
BerkeleyEarth-1.1/BerkeleyEarth/man/BerkeleyEarth-package.Rd | 2 -
BerkeleyEarth-1.1/BerkeleyEarth/man/readAsArray.Rd |only
BerkeleyEarth-1.1/BerkeleyEarth/man/readBerkeleyData.Rd |only
BerkeleyEarth-1.1/BerkeleyEarth/man/readBerkeleyTemp.Rd |only
11 files changed, 13 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-24 1.1.0
2010-02-09 1.0.5
2010-01-22 1.0.4
2009-07-22 1.0.2