Title: Simulating Data to Study Performance of Clustering Algorithms
Diff between MixSim versions 1.0-2 dated 2010-12-08 and 1.0-3 dated 2012-02-21
Description: MixSim allows simulating mixtures of Gaussian
distributions with different levels of overlap between mixture
components. Pairwise overlap, defined as a sum of two
misclassification probabilities, measures the degree of
interaction between components and can be readily employed to
control the complexity of datasets simulated from mixtures.
These datasets can then be used for systematic performance
investigation of clustering and finite mixture modeling
algorithms. Among other capabilities of MixSim, there are
computing the exact overlap for Gaussian mixtures, simulating
Gaussian and non-Gaussian data, simulating outliers and noise
variables, calculating various measures of agreement between
two partitionings, and constructing parallel distribution plots
for the graphical display of finite mixture models.
Author: Volodymyr Melnykov, Wei-Chen Chen, and Ranjan Maitra
Maintainer: Volodymyr Melnykov
MixSim-1.0-2/MixSim/INDEX |only
MixSim-1.0-3/MixSim/ChangeLog | 7 +-
MixSim-1.0-3/MixSim/DESCRIPTION | 33 ++++++++----
MixSim-1.0-3/MixSim/MD5 |only
MixSim-1.0-3/MixSim/NAMESPACE | 16 +++++-
MixSim-1.0-3/MixSim/R/main.R | 38 +++++++++++++-
MixSim-1.0-3/MixSim/R/zzz.R | 6 --
MixSim-1.0-3/MixSim/demo/sec3.1_ex1.R | 4 +
MixSim-1.0-3/MixSim/demo/sec3.1_ex2.R | 4 +
MixSim-1.0-3/MixSim/demo/sec3.1_ex3.R | 6 +-
MixSim-1.0-3/MixSim/demo/sec3.2_ex1.R | 16 ++----
MixSim-1.0-3/MixSim/demo/sec3.4_ex1.R | 16 ++----
MixSim-1.0-3/MixSim/demo/sec3.4_ex2c.R | 2
MixSim-1.0-3/MixSim/demo/sec4_ex1.R | 30 ++++++-----
MixSim-1.0-3/MixSim/man/00_MixSim-package.Rd | 28 ++++++----
MixSim-1.0-3/MixSim/man/ClassProp.Rd | 16 +++---
MixSim-1.0-3/MixSim/man/MixSim.Rd | 72 +++++++++++++++------------
MixSim-1.0-3/MixSim/man/RandIndex.Rd | 34 +++++++-----
MixSim-1.0-3/MixSim/man/VarInf.Rd | 14 ++---
MixSim-1.0-3/MixSim/man/overlap.Rd | 54 +++++++++-----------
MixSim-1.0-3/MixSim/man/pdplot.Rd | 52 +++++++++----------
MixSim-1.0-3/MixSim/man/perms.Rd | 10 +--
MixSim-1.0-3/MixSim/man/print.summary.Rd |only
MixSim-1.0-3/MixSim/man/simdataset.Rd | 38 +++++++-------
MixSim-1.0-3/MixSim/src/array.h | 11 ++++
MixSim-1.0-3/MixSim/src/libOverlap.c | 16 ++++++
26 files changed, 314 insertions(+), 209 deletions(-)
Title: Identifying unique multilocus genotypes where genotyping error
and missing data may be present
Diff between allelematch versions 2.01 dated 2012-01-11 and 2.02 dated 2012-02-21
Description: This package provides tools for the identification of
unique of multilocus genotypes when both genotyping error and
missing data may be present. The package is targeted at those
working with large datasets and databases containing multiple
samples of each individual, a situation that is common in
conservation genetics, and particularly in non-invasive
wildlife sampling applications. Functions explicitly
incorporate missing data, and can tolerate allele mismatches
created by genotyping error.
Author: Paul Galpern
Maintainer: Paul Galpern
allelematch-2.01/allelematch/inst/doc/allelematch_vignette.Rnw |only
allelematch-2.01/allelematch/inst/doc/allelematch_vignette.pdf |only
allelematch-2.02/allelematch/DESCRIPTION | 13 +++--
allelematch-2.02/allelematch/MD5 | 11 ++--
allelematch-2.02/allelematch/inst/CITATION |only
allelematch-2.02/allelematch/inst/doc/allelematchSuppDoc.Rnw |only
allelematch-2.02/allelematch/inst/doc/allelematchSuppDoc.pdf |only
allelematch-2.02/allelematch/man/allelematch-package.Rd | 23 ++++++----
allelematch-2.02/allelematch/man/amCSSForHTML.Rd | 3 -
9 files changed, 31 insertions(+), 19 deletions(-)
Title: Improved Predictors
Diff between ipred versions 0.8-12 dated 2012-02-20 and 0.8-13 dated 2012-02-21
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems as
well as resampling based estimators of prediction error.
Author: Andrea Peters and Torsten Hothorn
Maintainer: Torsten Hothorn
ipred-0.8-12/ipred/CHANGES |only
ipred-0.8-13/ipred/DESCRIPTION | 8 ++++----
ipred-0.8-13/ipred/MD5 | 8 ++++----
ipred-0.8-13/ipred/NAMESPACE | 3 ++-
ipred-0.8-13/ipred/inst/NEWS |only
ipred-0.8-13/ipred/inst/doc/ipred-examples.pdf |binary
6 files changed, 10 insertions(+), 9 deletions(-)
Title: Distributed Lag Non-linear Models
Diff between dlnm versions 1.5.2 dated 2012-01-05 and 1.5.3 dated 2012-02-21
Description: The package dlnm contains functions to specify and run
distributed lag linear and non-linear models.
Author: Antonio Gasparrini and Ben Armstrong
Maintainer: Antonio Gasparrini
DESCRIPTION | 11 ++++++-----
MD5 | 16 ++++++++--------
R/lines.crosspred.R | 2 +-
R/mkbasis.R | 2 +-
R/onebasis.R | 1 +
R/points.crosspred.R | 2 +-
inst/ChangeLog | 16 +++++++++++++++-
inst/Changesince151 | 2 +-
inst/doc/dlnmOverview.pdf |binary
9 files changed, 34 insertions(+), 18 deletions(-)
More information about depend.truncation at CRAN
Permanent link
Title: Comparative Analyses of Phylogenetics and Evolution in R
Diff between caper versions 0.4 dated 2011-06-03 and 0.5 dated 2012-02-21
Description: Functions for performing phylogenetic comparative
analyses.
Author: David Orme, Rob Freckleton, Gavin Thomas, Thomas Petzoldt,
Susanne Fritz, Nick Isaac, Will Pearse
Maintainer: David Orme
DESCRIPTION | 13 +++++-----
MD5 |only
NAMESPACE |only
R/clade.matrix.R | 25 +++++++++++---------
R/comparative.data.R | 41 +++++++++++++++++++---------------
R/contrCalc.R | 9 +++++--
R/growTree.R | 9 ++++---
R/pgls.R | 34 ++++++++++++++++++++++++----
R/phylo.d.R | 47 +++++++++++++++++++++++++++++----------
R/phylo.d.subset.R |only
data/BritishBirds.rda |binary
data/IsaacEtAl.rda |binary
data/benchBayesTraitsOutputs.rda |binary
data/benchBrunchOutputs.rda |binary
data/benchCrunchOutputs.rda |binary
data/benchFuscoOutputs.rda |binary
data/benchMacroCAICOutputs.rda |binary
data/benchMesaOutputs.rda |binary
data/benchTestInputs.rda |binary
data/fuscoData.rda |binary
data/perissodactyla.rda |binary
data/pglsBenchmarks.rda |binary
data/shorebird.rda |binary
data/syrphidae.rda |binary
inst/doc/caper-benchmarks.pdf |binary
inst/doc/caper-benchmarks.rnw | 1
inst/doc/caper.pdf |binary
inst/doc/caper.rnw | 30 +++++++++++++++++++-----
man/pgls-methods.Rd | 4 +--
man/phylo.d.Rd | 7 ++++-
man/phylo.d.subset.Rd |only
31 files changed, 155 insertions(+), 65 deletions(-)
Title: Tools for Approximate Bayesian Computation (ABC)
Diff between abc versions 1.4 dated 2011-09-04 and 1.5 dated 2012-02-21
Description: The package implements several ABC algorithms for
performing parameter estimation and model selection.
Cross-validation tools are also available for measuring the
accuracy of ABC estimates, and to calculate the
misclassification probabilities of different models.
Author: Katalin Csillery, Michael Blum and Olivier Francois
Maintainer: Katalin Csillery
abc-1.4/abc/R/abc2.R |only
abc-1.4/abc/inst/doc/.Rhistory |only
abc-1.4/abc/inst/doc/Makefile |only
abc-1.4/abc/inst/doc/abcvignette.bib |only
abc-1.4/abc/inst/doc/abcvignette.out |only
abc-1.4/abc/inst/doc/abcvignette.toc |only
abc-1.4/abc/inst/doc/runms.R |only
abc-1.4/abc/inst/doc/runms4ppc.R |only
abc-1.5/abc/CHANGES |only
abc-1.5/abc/DESCRIPTION | 8
abc-1.5/abc/MD5 | 24 +-
abc-1.5/abc/R/abc.R | 376 +++++++++++++++++++++--------------
abc-1.5/abc/inst/CITATION | 9
abc-1.5/abc/inst/doc/abcvignette.Rnw | 24 +-
abc-1.5/abc/inst/doc/abcvignette.pdf |binary
abc-1.5/abc/man/abc.Rd | 4
abc-1.5/abc/vignettes |only
17 files changed, 268 insertions(+), 177 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-03 1.22.0
2011-10-11 1.21.2
2011-04-26 1.20.0
2011-03-06 1.18.4
2011-02-07 1.18.3
2010-10-24 1.18.2
2010-07-29 1.16.1
2010-04-25 1.16.0
2010-04-08 1.15.4
2010-03-17 1.15.2
2009-11-11 1.15.1
Title: RMAWGEN (R Multi-site Auto-regressive Weather GENeretor): a
package to generate daily time series from monthly mean values
Diff between RMAWGEN versions 1.2.1 dated 2012-01-14 and 1.2.2 dated 2012-02-21
Description: This package contains S3 and S4 functions for spatial
multi-site stochastic generation of daily timeseries of
temperature and precipitation. The implemented tools make use
of Vectorial AutoRegressive models (VARs). The VAR is
calibrated by daily instrumental "Gaussinized" time series and
then works with monthly timeseries as input.
Bugs/comments/questions/collaboration of any kind are warmly
welcomed.
Author: Emanuele Cordano, Emanuele Eccel
Maintainer: Emanuele Cordano
RMAWGEN-1.2.1/RMAWGEN/man/print.GPCA.Rd |only
RMAWGEN-1.2.1/RMAWGEN/man/print.GPCAiteration.Rd |only
RMAWGEN-1.2.2/RMAWGEN/DESCRIPTION | 9 -
RMAWGEN-1.2.2/RMAWGEN/MD5 | 37 ++---
RMAWGEN-1.2.2/RMAWGEN/NAMESPACE | 4
RMAWGEN-1.2.2/RMAWGEN/R/ComprehensivePrecipitationGenerator.R | 10 -
RMAWGEN-1.2.2/RMAWGEN/R/RMAWGEN-package.R | 11 +
RMAWGEN-1.2.2/RMAWGEN/R/continuity_ratio.R | 27 +++-
RMAWGEN-1.2.2/RMAWGEN/R/plot.sample.R | 64 ++++++++--
RMAWGEN-1.2.2/RMAWGEN/R/print.GPCA.R | 14 +-
RMAWGEN-1.2.2/RMAWGEN/R/print.GPCAiteration.R | 17 +-
RMAWGEN-1.2.2/RMAWGEN/R/splineInterpolateMonthlytoDaily.R | 12 +
RMAWGEN-1.2.2/RMAWGEN/R/splineInterpolateMonthlytoDailyforSeveralYears.R | 6
RMAWGEN-1.2.2/RMAWGEN/inst/doc/examples/weather-generator.R | 2
RMAWGEN-1.2.2/RMAWGEN/man/ComprehensivePrecipitationGenerator.Rd | 7 -
RMAWGEN-1.2.2/RMAWGEN/man/RMAWGEN-package.Rd | 12 +
RMAWGEN-1.2.2/RMAWGEN/man/continuity_ratio.Rd | 23 +++
RMAWGEN-1.2.2/RMAWGEN/man/plot_sample.Rd | 24 +++
RMAWGEN-1.2.2/RMAWGEN/man/print.Rd |only
RMAWGEN-1.2.2/RMAWGEN/man/splineInterpolateMonthlytoDaily.Rd | 8 +
RMAWGEN-1.2.2/RMAWGEN/man/splineInterpolateMonthlytoDailyforSeveralYears.Rd | 8 +
21 files changed, 222 insertions(+), 73 deletions(-)
Title: A package for estimating age-specific survival from incomplete
capture-recapture/recovery data
Diff between BaSTA versions 1.0 dated 2011-11-05 and 1.1 dated 2012-02-21
Description: This package estimates survival and mortality with
covariates from capture-recapture/recovery data in a Bayesian
framework when many individuals are of unknown age. It includes
tools for data checking, model diagnostics and outputs such as
life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero
BaSTA-1.0/BaSTA/inst/doc/Fig3.pdf |only
BaSTA-1.0/BaSTA/inst/doc/Fig4.pdf |only
BaSTA-1.0/BaSTA/inst/doc/Refs.bib |only
BaSTA-1.0/BaSTA/inst/doc/jae.bst |only
BaSTA-1.0/BaSTA/inst/doc/jae.dbj |only
BaSTA-1.0/BaSTA/inst/doc/jae.sty |only
BaSTA-1.1/BaSTA/DESCRIPTION | 14
BaSTA-1.1/BaSTA/MD5 | 48 -
BaSTA-1.1/BaSTA/NAMESPACE |only
BaSTA-1.1/BaSTA/R/CensusToCaptHist.R | 9
BaSTA-1.1/BaSTA/R/DataCheck.R | 28
BaSTA-1.1/BaSTA/R/MakeCovMat.R | 11
BaSTA-1.1/BaSTA/R/PlotMultiMort.R |only
BaSTA-1.1/BaSTA/R/basta.default.R | 892 ++++++++++++++++-------------
BaSTA-1.1/BaSTA/R/print.basta.R | 2
BaSTA-1.1/BaSTA/R/summary.basta.R | 10
BaSTA-1.1/BaSTA/data/datalist |only
BaSTA-1.1/BaSTA/data/sim1.RData |binary
BaSTA-1.1/BaSTA/data/sim1Out.RData |binary
BaSTA-1.1/BaSTA/inst/CITATION |only
BaSTA-1.1/BaSTA/inst/doc/BaSTAoverview.Rnw | 529 +++++++++++------
BaSTA-1.1/BaSTA/inst/doc/BaSTAoverview.pdf |binary
BaSTA-1.1/BaSTA/man/PlotMultiMort.Rd |only
BaSTA-1.1/BaSTA/man/basta.Rd | 11
BaSTA-1.1/BaSTA/man/sim1.Rd | 2
BaSTA-1.1/BaSTA/man/summary.basta.Rd | 2
BaSTA-1.1/BaSTA/vignettes |only
27 files changed, 931 insertions(+), 627 deletions(-)
Title: Time series analysis and computational finance
Diff between tseries versions 0.10-27 dated 2011-10-23 and 0.10-28 dated 2012-02-21
Description: Package for time series analysis and computational finance
Author: Compiled by Adrian Trapletti
Maintainer: Kurt Hornik
ChangeLog | 7 +++++++
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/finance.R | 29 ++++++++++++++++++++++++-----
data/NelPlo.rda |binary
data/USeconomic.rda |binary
data/bev.rda |binary
data/camp.rda |binary
data/ice.river.rda |binary
data/nino.rda |binary
data/tcm.rda |binary
data/tcmd.rda |binary
man/get.hist.quote.Rd | 4 ++++
13 files changed, 51 insertions(+), 21 deletions(-)
Title: R/Weka interface
Diff between RWeka versions 0.4-10 dated 2012-01-10 and 0.4-11 dated 2012-02-21
Description: An R interface to Weka (Version 3.7.5). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package RWeka contains the interface code, the
Weka jar is in a separate package RWekajars. For more
information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Maintainer: Kurt Hornik
CHANGELOG | 8 ++++++-
DESCRIPTION | 8 +++----
MD5 | 18 ++++++++---------
R/control.R | 5 +++-
R/wow.R | 8 ++++---
R/zzz.R | 13 ++++++++----
inst/doc/RWeka.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++++-
inst/doc/RWeka.pdf |binary
man/Weka_clusterers.Rd | 2 -
vignettes/RWeka.Rnw | 50 ++++++++++++++++++++++++++++++++++++++++++++++++-
10 files changed, 137 insertions(+), 25 deletions(-)
Title: Generating and fitting truncated (gamlss.family) distributions
Diff between gamlss.tr versions 4.0-4 dated 2010-10-15 and 4.1-0 dated 2012-02-21
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 8 ++++----
MD5 |only
man/gamlss.tr.package.Rd | 2 +-
man/gen.trun.Rd | 2 +-
man/trun.Rd | 2 +-
man/trun.d.Rd | 2 +-
man/trun.p.Rd | 2 +-
man/trun.q.Rd | 2 +-
man/trun.r.Rd | 2 +-
9 files changed, 11 insertions(+), 11 deletions(-)
Title: A GAMLSS add on package for fitting mixture distributions
Diff between gamlss.mx versions 4.0-4 dated 2010-10-15 and 4.1-0 dated 2012-02-21
Description: The main purpose of this package is to allow fitting of
mixture distributions with GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
gamlss.mx-4.0-4/gamlss.mx/data/brains.r |only
gamlss.mx-4.0-4/gamlss.mx/data/enzyme.R |only
gamlss.mx-4.1-0/gamlss.mx/DESCRIPTION | 8 ++++----
gamlss.mx-4.1-0/gamlss.mx/MD5 |only
gamlss.mx-4.1-0/gamlss.mx/R/gamlssMX-10-11-07.R | 4 ++--
gamlss.mx-4.1-0/gamlss.mx/R/gamlssNP.R | 3 ++-
gamlss.mx-4.1-0/gamlss.mx/data/brains.rda |only
gamlss.mx-4.1-0/gamlss.mx/data/enzyme.rda |only
gamlss.mx-4.1-0/gamlss.mx/man/MX.control.Rd | 2 +-
gamlss.mx-4.1-0/gamlss.mx/man/gamlss.mx.package.Rd | 2 +-
gamlss.mx-4.1-0/gamlss.mx/man/gamlssMX.Rd | 3 ++-
gamlss.mx-4.1-0/gamlss.mx/man/gamlssNP.Rd | 2 +-
12 files changed, 13 insertions(+), 11 deletions(-)
Title: GAMLSS Additive.
Diff between gamlss.add versions 4.0-5 dated 2011-05-02 and 4.1-0 dated 2012-02-21
Description: Extra additive terms for GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 8 -
LICENSE | 88 +++++++++---------
MD5 |only
R/fk-new-gamlss.R | 140 ++++++++++++++--------------
man/fk.Rd | 262 +++++++++++++++++++++++++++---------------------------
5 files changed, 250 insertions(+), 248 deletions(-)
Title: Fitting an interval response variable using gamlss.family
distributions
Diff between gamlss.cens versions 4.0.4 dated 2010-10-15 and 4.1.0 dated 2012-02-21
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to fit interval response variables in
GAMLSS models. The main function gen.cens() generates a
censored version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
gamlss.cens-4.0.4/gamlss.cens/data/lip.r |only
gamlss.cens-4.1.0/gamlss.cens/DESCRIPTION | 8 ++++----
gamlss.cens-4.1.0/gamlss.cens/MD5 |only
gamlss.cens-4.1.0/gamlss.cens/data/lip.rda |only
gamlss.cens-4.1.0/gamlss.cens/man/cens.Rd | 2 +-
gamlss.cens-4.1.0/gamlss.cens/man/cens.d.Rd | 2 +-
gamlss.cens-4.1.0/gamlss.cens/man/cens.p.Rd | 2 +-
gamlss.cens-4.1.0/gamlss.cens/man/cens.q.Rd | 2 +-
gamlss.cens-4.1.0/gamlss.cens/man/gamlss.cens-package.Rd | 2 +-
gamlss.cens-4.1.0/gamlss.cens/man/gen.cens.Rd | 2 +-
10 files changed, 10 insertions(+), 10 deletions(-)
Title: Simultaneous simulation of Q and R mode factor analyses
Diff between qrfactor versions 1.1 dated 2011-11-14 and 1.2 dated 2012-02-21
Description: The qrfactor package simultaneously runs both Q and R mode
factor analyses. The package contains only one function called
qrfactor() that can perform PCA, R-mode Factor Analysis, Q-mode
Factor Analysis, Simultaneous R- and Q-mode Factor Analysis,
Principal Coordinate Analysis, as wells as Multidimensional
Scaling (MDS). Loadings and scores can easily be computed from
the simulation.The plot.qrfactor() function offers several
annotated biplots for all possible combinations of
eigenvectors, loadings, and scores.
Author: George Owusu
Maintainer: George Owusu
qrfactor-1.1/qrfactor/R/qrfactor.R |only
qrfactor-1.1/qrfactor/inst |only
qrfactor-1.2/qrfactor/DESCRIPTION | 19 ++++++++++++++-----
qrfactor-1.2/qrfactor/MD5 | 18 +++++++++++++-----
qrfactor-1.2/qrfactor/NAMESPACE |only
qrfactor-1.2/qrfactor/R/qrfactor12.R |only
qrfactor-1.2/qrfactor/man/qrfactor-internal.Rd | 5 ++---
qrfactor-1.2/qrfactor/man/qrfactor.Rd | 21 ++++++++++++++-------
qrfactor-1.2/qrfactor/tests |only
9 files changed, 43 insertions(+), 20 deletions(-)
Title: Analysis of evolutionary rates in an OU framework
Diff between OUwie versions 1.10 dated 2011-12-20 and 1.13 dated 2012-02-21
Description: Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and drift to vary across selective regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy M. Beaulieu
DESCRIPTION | 22 +++---
MD5 | 18 ++---
NAMESPACE | 2
R/OUwie.R | 173 +++++++++++++++++++++++++++++---------------------
R/OUwie.fixed.R | 2
R/varcov.ou.R | 181 ++++++++++++++++++++++++-----------------------------
R/weight.mat.R | 169 +++++++++++++++++++++++++++----------------------
data/sim.ex.rda |binary
data/tworegime.rda |binary
man/OUwie.Rd | 5 -
10 files changed, 303 insertions(+), 269 deletions(-)
Title: Graphical Independence Networks
Diff between gRain versions 0.8.13 dated 2012-02-18 and 0.8.14 dated 2012-02-21
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems or Bayesian networks.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
MD5 | 20 ++++++++++----------
R/Finding.R | 24 ++++++++++++++++--------
R/compile-grain.R | 6 ++++--
R/compileCPT.R | 3 +--
R/extractCPT.R | 4 ++++
R/grain-main.R | 31 +++++++++++++++++++------------
R/propagate.R | 12 ++++--------
R/update.R | 3 +--
inst/doc/gRain-intro.pdf |binary
11 files changed, 68 insertions(+), 47 deletions(-)
Title: Planning and Analyzing Dose Finding experiments
Diff between DoseFinding versions 0.5-7 dated 2012-01-24 and 0.6-1 dated 2012-02-21
Description: The DoseFinding package provides functions for the design
and analysis of dose-finding experiments (for example
pharmaceutical Phase II clinical trials). It provides functions
for: multiple contrast tests, fitting non-linear dose-response
models, calculating optimal designs and an implementation of
the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp
ChangeLog | 6 +
DESCRIPTION | 8 +-
MD5 | 24 +++---
NAMESPACE | 4 -
R/fitModel.R | 175 +++++++++++++++++++++++++--------------------
R/genFitCode.R | 111 ++++++++++++++++------------
man/DRMod-methods.Rd | 9 +-
man/DoseFinding-package.Rd | 6 -
man/calcBayesEst.Rd | 2
man/doseRespModels.Rd | 95 ++++++++++++++++--------
man/gFitDRModel.Rd | 10 +-
man/getUpdDesign.Rd | 2
tests/testgFit.R | 23 +++--
13 files changed, 281 insertions(+), 194 deletions(-)
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Diff between bpca versions 1.0-8 dated 2011-04-24 and 1.0-10 dated 2012-02-21
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the
quality of the reduction.
Author: Jose Claudio Faria & Clarice Garcia Borges Demetrio
Maintainer: Jose Claudio Faria
ChangeLog | 6 ++++++
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
R/plot.bpca.3d.R | 10 ----------
R/summary.bpca.R | 2 +-
man/bpca-package.Rd | 10 ----------
7 files changed, 11 insertions(+), 25 deletions(-)