Title: 28 benchmark densities from Berlinet/Devroye (1994)
Diff between benchden versions 1.0.4 dated 2011-03-05 and 1.0.5 dated 2012-02-29
Description: Full implementation of the 28 distributions introduced as
benchmarks for nonparametric density estimation by Berlinet and
Devroye (1994). Includes densities, cdfs, quantile functions
and generators for samples as well as additional information on
features of the densities. Also contains the 4 histogram
densities used in Rozenholc/Mildenberger/Gather (2010).
Author: Thoralf Mildenberger, Henrike Weinert, Sebastian Tiemeyer
Maintainer: Thoralf Mildenberger
DESCRIPTION | 8 +-
MD5 |only
inst |only
man/bberdev.Rd | 6 +-
man/berdev.Rd | 6 +-
man/bhisto.Rd | 155 +++++++++++++++++++++++++++++----------------------------
man/dberdev.Rd | 4 +
man/dhisto.Rd | 6 +-
man/histo.Rd | 7 ++
9 files changed, 109 insertions(+), 83 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.25-3 dated 2012-02-05 and 1.25-4 dated 2012-02-29
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns, and space-time point
patterns in any number of dimensions. Contains over 1000
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Exploratory methods include K-functions,
nearest neighbour distance and empty space statistics, Fry
plots, pair correlation function, kernel smoothed intensity,
relative risk estimation with cross-validated bandwidth
selection, mark correlation functions, segregation indices,
mark dependence diagnostics etc. Point process models can be
fitted to point pattern data using functions ppm, kppm, slrm
similar to glm. Models may include dependence on covariates,
interpoint interaction, cluster formation and dependence on
marks. Fitted models can be simulated automatically. Also
provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation envelopes,
residuals, residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.25-3/spatstat/src/Kwborder.c |only
spatstat-1.25-4/spatstat/DESCRIPTION | 22 -
spatstat-1.25-4/spatstat/MD5 | 51 +--
spatstat-1.25-4/spatstat/NEWS | 47 +++
spatstat-1.25-4/spatstat/R/Kest.R | 207 ++++++++++++--
spatstat-1.25-4/spatstat/R/mpl.R | 16 -
spatstat-1.25-4/spatstat/R/plot.im.R | 109 ++++++-
spatstat-1.25-4/spatstat/R/profilepl.R | 8
spatstat-1.25-4/spatstat/R/rPerfect.R | 62 ++++
spatstat-1.25-4/spatstat/R/random.R | 4
spatstat-1.25-4/spatstat/inst/doc/getstart.pdf |binary
spatstat-1.25-4/spatstat/inst/doc/shapefiles.pdf |binary
spatstat-1.25-4/spatstat/inst/ratfor/Makefile | 24 -
spatstat-1.25-4/spatstat/man/Kest.Rd | 30 +-
spatstat-1.25-4/spatstat/man/plot.im.Rd | 16 -
spatstat-1.25-4/spatstat/man/rStrauss.Rd | 4
spatstat-1.25-4/spatstat/man/rStraussHard.Rd |only
spatstat-1.25-4/spatstat/man/spatstat-internal.Rd | 4
spatstat-1.25-4/spatstat/man/spatstat-package.Rd | 2
spatstat-1.25-4/spatstat/src/Kborder.c | 170 ++---------
spatstat-1.25-4/spatstat/src/Kborder.h |only
spatstat-1.25-4/spatstat/src/Knone.c |only
spatstat-1.25-4/spatstat/src/Knone.h |only
spatstat-1.25-4/spatstat/src/Perfect.cc | 293 --------------------
spatstat-1.25-4/spatstat/src/PerfectDGS.h | 1
spatstat-1.25-4/spatstat/src/PerfectDiggleGratton.h | 1
spatstat-1.25-4/spatstat/src/PerfectHardcore.h | 2
spatstat-1.25-4/spatstat/src/PerfectStrauss.h |only
spatstat-1.25-4/spatstat/src/PerfectStraussHard.h |only
spatstat-1.25-4/spatstat/tests/alltests.R | 9
30 files changed, 531 insertions(+), 551 deletions(-)
Title: R and Hive
Diff between RHive versions 0.0-4 dated 2011-12-16 and 0.0-5 dated 2012-02-29
Description: RHive is an R extension facilitating distributed computing
via HIVE query. It provides an easy to use HQL like SQL and R
objects and functions in HQL.
Author: NexR
Maintainer: NexR
DESCRIPTION | 15
MD5 | 32 +
NAMESPACE | 18 +
R/basic.R |only
R/hdfs.R | 160 ++++++++
R/rhive.R | 234 ++++++++++---
inst/java/rhive_udf.jar |binary
inst/javasrc/build.num | 4
inst/javasrc/src/com/nexr/rhive/hive/udf/RangeKeyUDF.java |only
inst/javasrc/src/com/nexr/rhive/hive/udf/ScaleUDF.java |only
inst/javasrc/src/com/nexr/rhive/util/DFUtils.java |only
inst/javasrc/src/com/nexr/rhive/util/RangeTreeFactory.java |only
inst/javasrc/src/com/nexr/rhive/util/TransformUtils.java | 14
man/rhive-aggregate.Rd | 3
man/rhive-api.Rd | 10
man/rhive-apply.Rd | 11
man/rhive-basic.Rd |only
man/rhive-hdfs.Rd | 21 +
man/rhive-query.Rd | 3
man/rhive.Rd | 25 +
20 files changed, 471 insertions(+), 79 deletions(-)
Title: MultiPhen, a package for the genetic association testing of
multiple phenotypes
Diff between MultiPhen versions 0.2 dated 2011-07-23 and 0.3 dated 2012-02-29
Description: Performs genetic association tests between SNPs
(one-at-a-time) and multiple phenotypes (separately or in joint
model)
Author: Lachlan Coin, Paul O'Reilly, Yotsawat Pompyen, Clive Hoggart
and Federico Calboli
Maintainer: Federico Calboli
DESCRIPTION | 6 +++---
MD5 |only
NAMESPACE |only
R/MultiPhen-internal.R | 4 ++--
man/mPhen.Rd | 8 ++++----
5 files changed, 9 insertions(+), 9 deletions(-)
Title: Model-Based Boosting
Diff between mboost versions 2.1-1 dated 2011-11-29 and 2.1-2 dated 2012-02-29
Description: Functional gradient descent algorithm (boosting) for
optimizing general risk functions utilizing component-wise
(penalised) least squares estimates or regression trees as
base-learners for fitting generalized linear, additive and
interaction models to potentially high-dimensional data.
Author: Torsten Hothorn [aut, cre], Peter Buehlmann [aut], Thomas Kneib
[aut], Matthias Schmid [aut], Benjamin Hofner [aut]
Maintainer: Torsten Hothorn
mboost-2.1-1/mboost/inst/doc/boost.bib |only
mboost-2.1-1/mboost/inst/doc/jmlr2e.sty |only
mboost-2.1-1/mboost/inst/doc/setup.R |only
mboost-2.1-1/mboost/tests/mboost_illustrations.R |only
mboost-2.1-1/mboost/tests/mboost_illustrations.Rout.save |only
mboost-2.1-2/mboost/DESCRIPTION | 33 -
mboost-2.1-2/mboost/MD5 | 95 +-
mboost-2.1-2/mboost/NEWS | 12
mboost-2.1-2/mboost/R/bkronecker.R | 3
mboost-2.1-2/mboost/R/bl.R | 20
mboost-2.1-2/mboost/R/bmono.R | 5
mboost-2.1-2/mboost/R/bmrf.R | 5
mboost-2.1-2/mboost/R/brad.R | 5
mboost-2.1-2/mboost/R/buser.R | 5
mboost-2.1-2/mboost/R/mboost.R | 7
mboost-2.1-2/mboost/data/Westbc.rda |binary
mboost-2.1-2/mboost/data/birds.rda |binary
mboost-2.1-2/mboost/data/bodyfat.rda |binary
mboost-2.1-2/mboost/data/wpbc.rda |binary
mboost-2.1-2/mboost/inst/CHANGES | 12
mboost-2.1-2/mboost/inst/doc/SurvivalEnsembles.pdf |binary
mboost-2.1-2/mboost/inst/doc/mboost.pdf |binary
mboost-2.1-2/mboost/inst/doc/mboost_illustrations.Rnw | 4
mboost-2.1-2/mboost/inst/doc/mboost_illustrations.pdf |binary
mboost-2.1-2/mboost/inst/doc/mboost_tutorial.Rnw |only
mboost-2.1-2/mboost/inst/doc/mboost_tutorial.pdf |only
mboost-2.1-2/mboost/man/Family.Rd | 489 +++++++--------
mboost-2.1-2/mboost/man/baselearners.Rd | 66 +-
mboost-2.1-2/mboost/man/blackboost.Rd | 15
mboost-2.1-2/mboost/man/bodyfat.Rd | 6
mboost-2.1-2/mboost/man/cvrisk.Rd | 5
mboost-2.1-2/mboost/man/gamboost.Rd | 6
mboost-2.1-2/mboost/man/glmboost.Rd | 13
mboost-2.1-2/mboost/man/mboost.Rd | 11
mboost-2.1-2/mboost/man/mboost_package.Rd | 19
mboost-2.1-2/mboost/man/methods.Rd | 8
mboost-2.1-2/mboost/tests/Examples/mboost-Ex.Rout.save | 109 +++
mboost-2.1-2/mboost/tests/birds_Biometrics.Rout.save | 2
mboost-2.1-2/mboost/tests/bugfixes.R | 18
mboost-2.1-2/mboost/tests/bugfixes.Rout.save | 96 ++
mboost-2.1-2/mboost/tests/regtest-baselearner.Rout.save | 58 +
mboost-2.1-2/mboost/tests/regtest-blackboost.Rout.save | 2
mboost-2.1-2/mboost/tests/regtest-family.Rout.save | 2
mboost-2.1-2/mboost/tests/regtest-gamboost.Rout.save | 11
mboost-2.1-2/mboost/tests/regtest-glmboost.Rout.save | 11
mboost-2.1-2/mboost/tests/regtest-hatmatrix.Rout.save | 2
mboost-2.1-2/mboost/vignettes |only
47 files changed, 790 insertions(+), 365 deletions(-)
Title: Non-additive measure and integral manipulation functions
Diff between kappalab versions 0.4-4 dated 2009-01-26 and 0.4-5 dated 2012-02-29
Description: Kappalab, which stands for "laboratory for capacities", is
an S4 tool box for capacity (or non-additive measure, fuzzy
measure) and integral manipulation on a finite setting. It
contains routines for handling various types of set functions
such as games or capacities. It can be used to compute several
non-additive integrals: the Choquet integral, the Sugeno
integral, and the symmetric and asymmetric Choquet integrals.
An analysis of capacities in terms of decision behavior can be
performed through the computation of various indices such as
the Shapley value, the interaction index, the orness degree,
etc. The well-known Möbius transform, as well as other
equivalent representations of set functions can also be
computed. Kappalab further contains seven capacity
identification routines: three least squares based approaches,
a method based on linear programming, a maximum entropy like
method based on variance minimization, a minimum distance
approach and an unsupervised approach grounded on parametric
entropies. The functions contained in Kappalab can for instance
be used in the framework of multicriteria decision making or
cooperative game theory.
Author: Michel Grabisch, Ivan Kojadinovic, Patrick Meyer.
Maintainer: Ivan Kojadinovic
DESCRIPTION | 44 ++++++++++++++++++++++++++++++++------------
MD5 |only
kappalab-Ex.R |only
man/ls.sorting.treatment.Rd | 3 ---
4 files changed, 32 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-18 0.9-0
Title: Inverse Regression for Text Analysis
Diff between textir versions 1.8 dated 2012-02-20 and 1.8-1 dated 2012-02-29
Description: A suite of tools for text and sentiment mining. This
includes the `mnlm' function, for sparse multinomial logistic
regression, `pls', a concise partial least squares routine, and
the `topics' function, for efficient estimation and dimension
selection in latent topic models.
Author: Matt Taddy
Maintainer: Matt Taddy
ChangeLog | 10 ++++++++
DESCRIPTION | 8 +++---
MD5 | 31 +++++++++++++-------------
NAMESPACE | 5 +++-
R/pls.R | 14 +++++++----
R/topics.R | 62 ++++++++++++++++++++++++++++++++++++++--------------
R/tpx.R | 13 ++++++++++
man/mnlm.Rd | 2 -
man/predict.mnlm.Rd | 3 --
man/predict.pls.Rd | 5 ++--
man/topicVar.Rd |only
src/Makevars | 4 +--
src/latools.c | 17 +++++++-------
src/mnlogit.c | 26 +++++++++++++--------
src/rhelp.c | 15 ++++++++----
src/rhelp.h | 2 +
src/topics.c | 28 +++++++++++------------
17 files changed, 160 insertions(+), 85 deletions(-)
Title: Utility function for defining S3 methods
Diff between R.methodsS3 versions 1.2.1 dated 2010-09-25 and 1.2.2 dated 2012-02-29
Description: Methods that simplify the setup of S3 generic functions
and S3 methods. Major effort has been made in making
definition of methods as simple as possible with a minimum of
maintenance for package developers. For example, generic
functions are created automatically, if missing, and naming
conflict are automatically solved, if possible. The method
setMethodS3() is a good start for those who in the future may
want to migrate to S4. This is a cross-platform package
implemented in pure R that generates standard S3 methods.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 16 ++++++--------
MD5 |only
R/getMethodS3.R | 6 +----
inst/NEWS | 4 +++
man/R.methodsS3-package.Rd | 2 -
man/getMethodS3.Rd | 49 ---------------------------------------------
6 files changed, 14 insertions(+), 63 deletions(-)
More information about replicationDemos at CRAN
Permanent link
Title: Rule- and Instance-Based Regression Modeling
Diff between Cubist versions 0.0.11 dated 2012-02-15 and 0.0.12 dated 2012-02-29
Description: Regression modeling using rules with added instance-based
corrections
Author: Max Kuhn, Steve Weston, Chris Keefer, Nathan Coulter. C code
for Cubist by Ross Quinlan
Maintainer: Max Kuhn
DESCRIPTION | 8 +++----
MD5 | 15 +++++++------
R/cubist.R | 2 -
R/lattice.R | 2 +
R/parseCubistModel.R | 38 +++++++++++++++++++++++++++++++---
R/varUsage.R | 56 ++++++++++++++++++++++++++++++++++++---------------
inst/NEWS.Rd | 15 +++++++++++++
inst/doc/cubist.pdf |binary
vignettes |only
9 files changed, 105 insertions(+), 31 deletions(-)
Title: Tools to Deal with Raster Maps
Diff between adehabitatMA versions 0.3.2 dated 2012-01-25 and 0.3.3 dated 2012-02-29
Description: A collection of tools to deal with raster maps
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/show.r | 12 ++++++++++--
inst/doc/adehabitatMA.Rnw | 2 +-
inst/doc/adehabitatMA.pdf |binary
5 files changed, 19 insertions(+), 11 deletions(-)