Title: Foreach looping construct for R
Diff between foreach versions 1.3.4 dated 2012-03-13 and 1.3.5 dated 2012-03-14
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation of
a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Author: Revolution Analytics
Maintainer: Revolution Analytics
DESCRIPTION | 6 +++---
MD5 | 9 +++++----
NEWS |only
R/do.R | 20 ++++++++++----------
inst/doc/foreach.pdf |binary
inst/doc/nested.pdf |binary
6 files changed, 18 insertions(+), 17 deletions(-)
Title: Simple key-value database
Diff between filehash versions 2.2 dated 2011-07-23 and 2.2-1 dated 2012-03-14
Description: Simple key-value database
Author: Roger D. Peng
Maintainer: Roger D. Peng
filehash-2.2-1/filehash/DESCRIPTION | 10 +++++-----
filehash-2.2-1/filehash/MD5 |only
filehash-2.2-1/filehash/R/zzz.R | 2 --
filehash-2.2-1/filehash/inst/doc/filehash.Rnw | 2 +-
filehash-2.2-1/filehash/inst/doc/filehash.pdf |binary
filehash-2.2/filehash/inst/doc/Sweave.sty |only
filehash-2.2/filehash/inst/doc/asa.bst |only
7 files changed, 6 insertions(+), 8 deletions(-)
Title: Agricultural datasets
Diff between agridat versions 1.3 dated 2011-10-20 and 1.4 dated 2012-03-14
Description: Datasets from books and papers related to agriculture.
Example analyses included.
Author: Kevin Wright
Maintainer: Kevin Wright
DESCRIPTION | 18 +-
MD5 | 238 +++++++++++++++++++---------------
NAMESPACE | 2
NEWS | 26 ++-
R/desplot.r | 99 +++++---------
data/allcroft.lodging.txt.gz |binary
data/archbold.apple.txt.gz |only
data/australia.soybean.txt.gz |binary
data/batchelor.apple.txt.gz |binary
data/batchelor.lemon.txt.gz |binary
data/batchelor.navel1.txt.gz |binary
data/batchelor.navel2.txt.gz |binary
data/batchelor.valencia.txt.gz |binary
data/batchelor.walnut.txt.gz |binary
data/besag.elbatan.txt.gz |binary
data/besag.met.txt.gz |binary
data/blackman.wheat.txt.gz |only
data/bridges.cucumber.txt.gz |binary
data/cochran.bib.txt.gz |binary
data/cochran.crd.txt.gz |only
data/cochran.latin.txt.gz |only
data/corsten.interaction.txt.gz |binary
data/cox.stripsplit.txt.gz |binary
data/crowder.germination.txt.gz |binary
data/darwin.maize.txt.gz |only
data/denis.missing.txt.gz |binary
data/denis.ryegrass.txt.gz |only
data/digby.jointregression.txt.gz |only
data/diggle.cow.txt.gz |binary
data/durban.competition.txt.gz |binary
data/durban.rowcol.txt.gz |binary
data/durban.splitplot.txt.gz |binary
data/eden.potato.txt.gz |binary
data/engelstad.nitro.txt.gz |only
data/federer.diagcheck.txt.gz |only
data/federer.tobacco.txt.gz |binary
data/gathmann.bt.txt.gz |binary
data/gauch.soy.txt.gz |binary
data/gilmour.serpentine.txt.gz |binary
data/gilmour.slatehall.txt.gz |only
data/gomez.fractionalfactorial.txt.gz |binary
data/gomez.groupsplit.txt.gz |binary
data/gomez.multilocsplitplot.txt.gz |binary
data/gomez.splitsplit.txt.gz |binary
data/gomez.stripplot.txt.gz |binary
data/gomez.stripsplitplot.txt.gz |binary
data/gomez.uniformity.txt.gz |binary
data/graybill.heteroskedastic.txt.gz |binary
data/hanks.sprinkler.txt.gz |binary
data/hildebrand.systems.txt.gz |binary
data/hughes.grapes.txt.gz |binary
data/ilri.sheep.txt.gz |only
data/john.alpha.txt.gz |only
data/kempton.competition.txt.gz |binary
data/kempton.rowcol.txt.gz |binary
data/kempton.slatehall.txt.gz |only
data/kempton.uniformity.txt.gz |binary
data/mcconway.turnip.txt.gz |binary
data/mead.strawberry.txt.gz |binary
data/mercer.wheat.txt.gz |binary
data/pearl.kernels.txt.gz |binary
data/rothamsted.brussels.txt.gz |binary
data/ryder.groundnut.txt.gz |only
data/shafii.rapeseed.txt.gz |binary
data/smith.uniformity3.txt.gz |binary
data/steel.soybeanmet.txt.gz |only
data/stroup.nin.txt.gz |binary
data/stroup.splitplot.txt.gz |binary
data/student.barley.txt.gz |binary
data/theobald.covariate.txt.gz |binary
data/thompson.cornsoy.txt.gz |binary
data/verbyla.lupin.txt.gz |binary
data/vsn.lupin3.txt.gz |only
data/wedderburn.barley.txt.gz |binary
data/wiebe.wheat.txt.gz |binary
data/williams.barley.txt.gz |binary
data/williams.cotton.txt.gz |binary
data/williams.trees.txt.gz |binary
data/yan.winterwheat.txt.gz |binary
data/yates.missing.txt.gz |binary
data/yates.oats.txt.gz |binary
man/aastveit.barley.Rd | 8 -
man/agridat.Rd | 65 ++++++---
man/allcroft.lodging.Rd | 2
man/archbold.apple.Rd |only
man/australia.soybean.Rd | 2
man/batchelor.Rd | 24 +--
man/besag.met.Rd | 12 -
man/blackman.wheat.Rd |only
man/bridges.cucmber.Rd | 2
man/cochran.bib.Rd | 2
man/cochran.crd.Rd |only
man/cochran.latin.Rd |only
man/corsten.interaction.Rd | 2
man/darwin.maize.Rd |only
man/denis.missing.Rd | 8 -
man/denis.ryegrass.Rd |only
man/desplot.Rd | 28 +++-
man/digby.jointregression.Rd |only
man/diggle.cow.Rd | 4
man/durban.competition.Rd | 2
man/eden.potato.Rd | 2
man/engelstad.nitro.Rd |only
man/federer.diagcheck.Rd |only
man/figures |only
man/gauch.soy.Rd | 5
man/gilmour.serpentine.Rd | 6
man/gilmour.slatehall.Rd |only
man/gomez.stripplot.Rd | 6
man/gomez.stripsplitplot.Rd | 2
man/gomez.uniformity.Rd | 8 -
man/graybill.heteroskedastic.Rd | 1
man/hanks.sprinkler.Rd | 15 +-
man/ilri.sheep.Rd |only
man/john.alpha.Rd |only
man/kempton.slatehall.Rd |only
man/kempton.uniformity.Rd | 6
man/mcconway.turnip.Rd | 4
man/mercer.wheat.Rd | 1
man/ryder.groundnut.Rd |only
man/shafii.rapeseed.Rd | 4
man/smith.uniformity3.Rd | 13 -
man/steel.soybeanmet.Rd |only
man/stroup.nin.Rd | 4
man/stroup.splitplot.Rd | 48 ++++++
man/student.barley.Rd | 2
man/talbot.potato.Rd | 2
man/theobald.covariate.Rd | 3
man/thompson.cornsoy.Rd | 7 -
man/vargas.wheat1.Rd | 3
man/vsn.lupin3.Rd |only
man/wiebe.wheat.Rd | 10 -
man/williams.barley.Rd | 6
man/williams.cotton.Rd | 6
man/yan.winterwheat.Rd | 2
man/yates.missing.Rd | 4
136 files changed, 413 insertions(+), 301 deletions(-)
Title: Gini methodology-based correlation and clustering analysis of
both microarray and RNA-Seq gene expression data
Diff between rsgcc versions 1.0 dated 2012-03-13 and 1.0.1 dated 2012-03-14
Description: This package provides functions for calcluating Gini
correlation coefficient (GCC) and performing GCC-based
clustering analysis of gene expression data generated from both
microarray and next-generation sequencing (RNA-Seq)
technologies. Gini correlation outperforms Pearson correlation
and Spearman correlation to identify regulatory relationships
from both microarray and RNA-Seq data. In addtion, GCC has the
capability of more robustness on non-distribution, less
sensitivity to outlier data points and higher comatibility to
RNA-Seq data.
Author: Chuang Ma, Xiangfeng Wang
Maintainer: Chuang Ma
DESCRIPTION | 11 ++++++-----
MD5 | 12 ++++++------
R/rsgcc.R | 4 ++--
R/rsgccgui.R | 13 +++++++++++--
data/rsgcc.rda |binary
man/gcc.tsheatmap.Rd | 9 ++++-----
man/rsgcc-package.Rd | 18 ++++++++++++++++++
7 files changed, 47 insertions(+), 20 deletions(-)
Title: Quantile Regression
Diff between quantreg versions 4.76 dated 2011-12-02 and 4.77 dated 2012-03-14
Description: Quantile regression and related methods.
Author: Roger Koenker
Maintainer: Roger Koenker
quantreg-4.76/quantreg/LEGAL |only
quantreg-4.76/quantreg/LICENSE |only
quantreg-4.77/quantreg/DESCRIPTION | 8 ++---
quantreg-4.77/quantreg/MD5 | 24 +++++++---------
quantreg-4.77/quantreg/R/rqss.R | 2 -
quantreg-4.77/quantreg/README |only
quantreg-4.77/quantreg/inst/Changelog | 19 +++++++++++++
quantreg-4.77/quantreg/inst/TODO |only
quantreg-4.77/quantreg/inst/doc/crq0.pdf |binary
quantreg-4.77/quantreg/inst/doc/engelcoef.pdf |binary
quantreg-4.77/quantreg/inst/doc/rq.pdf |binary
quantreg-4.77/quantreg/man/qss.Rd | 8 +++--
quantreg-4.77/quantreg/src/cholesky.f | 38 +++++++++++++-------------
quantreg-4.77/quantreg/src/mcmb.c | 15 ++++++----
14 files changed, 68 insertions(+), 46 deletions(-)
Title: Convertinging Odds Ratio to Relative Risk with Partial Data
Information
Diff between orsk versions 0.1-2 dated 2011-12-30 and 0.1-3 dated 2012-03-14
Description: Convertinging Odds Ratio to Relative Risk with Partial
Data Information
Author: Zhu Wang
Maintainer: Zhu Wang
orsk-0.1-2/orsk/inst/doc/jss.bst |only
orsk-0.1-2/orsk/inst/doc/jss.cls |only
orsk-0.1-2/orsk/inst/doc/jsslogo.jpg |only
orsk-0.1-3/orsk/DESCRIPTION | 10 -
orsk-0.1-3/orsk/MD5 | 23 +--
orsk-0.1-3/orsk/NAMESPACE | 2
orsk-0.1-3/orsk/NEWS | 5
orsk-0.1-3/orsk/R/orsk.R | 88 +++++++++----
orsk-0.1-3/orsk/R/zy.R |only
orsk-0.1-3/orsk/inst/doc/orsk_demo.Rnw | 211 ++++++++++++++++++---------------
orsk-0.1-3/orsk/inst/doc/orsk_demo.bib | 22 +++
orsk-0.1-3/orsk/inst/doc/orsk_demo.pdf |binary
orsk-0.1-3/orsk/man/orsk.Rd | 35 +++--
orsk-0.1-3/orsk/man/zy.Rd |only
orsk-0.1-3/orsk/src/oddsratio.f | 6
15 files changed, 245 insertions(+), 157 deletions(-)
Title: Derivative-free optimization algorithms by quadratic
approximation
Diff between minqa versions 1.1.18 dated 2011-10-03 and 1.2.0 dated 2012-03-14
Description: Derivative-free optimization by quadratic approximation
based on an interface to Fortran implementations by M. J. D.
Powell.
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen
ChangeLog | 6 ++++++
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
src/minqa.cpp | 18 ++++++++++++++----
4 files changed, 30 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-06 1.02
2009-12-09 1.01
2009-10-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-08-25 0.08
2010-04-12 0.07
2009-08-13 0.06
2009-07-31 0.05
2009-07-18 0.04
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-11-29 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-26 1.2
2009-09-25 1.1
2009-09-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-07 2.47
2010-12-18 2.46
2009-11-12 2.45
2009-07-21 2.44
2009-04-14 2.43
2009-03-06 2.42
2008-12-04 2.41
2008-09-05 2.4
2008-06-16 2.3
2008-06-13 2.22
2008-04-14 2.21
2008-04-07 2.2
2007-11-26 2.1
2006-12-15 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-16 1.1.3
2011-12-02 1.1.2
2011-06-08 1.1.1
2009-08-25 1.1.0-23
2008-12-30 1.1.0-22
2008-04-14 1.1.0-21
2008-02-21 1.1.0-19
2007-10-02 1.1.0-18
2007-06-14 1.1.0-17
Title: Build stock models and analyze stock portfolios.
Diff between stockPortfolio versions 1.1 dated 2010-04-15 and 1.2 dated 2012-03-14
More information about stockPortfolio at CRAN
Description: Download stock data, build single index, constant
correlation, and multigroup models, and estimate optimal stock
portfolios. Plotting functions for the portfolio possibilities
curve and portfolio cloud are included. A function to test a
portfolio on a data set is also provided.
Author: David Diez and Nicolas Christou
Maintainer: David Diez
DESCRIPTION | 11 +-
MD5 |only
NAMESPACE |only
R/getReturns.R | 224 +++++++++++++++++++++---------------------
R/optimalPort.R | 71 +++++++++++--
R/plot.optimalPortfolio.R | 8 +
R/plot.portReturn.R | 28 +++--
R/plot.stockReturns.R | 9 -
R/points.portReturn.R | 25 +++-
R/portCloud.R | 2
R/portPossCurve.R | 6 -
R/print.optimalPortfolio.R | 2
R/print.stockReturns.R | 6 -
R/stockModel.R | 74 ++++++++++---
R/summary.optimalPortfolio.R | 2
R/testPort.R | 3
man/adjustBeta.Rd | 6 -
man/getReturns.Rd | 5
man/optimalPort.Rd | 21 +++
man/portCloud.Rd | 4
man/portPossCurve.Rd | 4
man/stock04.Rd | 3
man/stock94.Rd | 3
man/stock94Info.Rd | 3
man/stock99.Rd | 3
man/stockModel.Rd | 6 -
man/stockPortfolio-package.Rd | 6 -
man/testPort.Rd | 3
28 files changed, 351 insertions(+), 187 deletions(-)
Permanent link
Title: Genetic analysis package
Diff between gap versions 1.1-3 dated 2011-12-06 and 1.1-6 dated 2012-03-14
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, some
statistics in linkage analysis, and association analysis
involving one or more genetic markers including haplotype
analysis with or without environmental covariates.
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao
gap-1.1-3/gap/R/twinan90.R |only
gap-1.1-3/gap/inst/OpenMx |only
gap-1.1-3/gap/inst/comp.score |only
gap-1.1-3/gap/inst/doc/BFDP.xls |only
gap-1.1-3/gap/inst/doc/FPRP.xls |only
gap-1.1-3/gap/inst/doc/Sweave.sty |only
gap-1.1-3/gap/inst/doc/index.html |only
gap-1.1-3/gap/inst/haplo.stats |only
gap-1.1-3/gap/inst/klem |only
gap-1.1-3/gap/man/twinan90.Rd |only
gap-1.1-3/gap/src/twinan90.f |only
gap-1.1-6/gap/.Rinstignore |only
gap-1.1-6/gap/.tm_properties |only
gap-1.1-6/gap/ChangeLog | 16 +
gap-1.1-6/gap/DESCRIPTION | 23 +-
gap-1.1-6/gap/MD5 | 100 +++++------
gap-1.1-6/gap/NAMESPACE | 6
gap-1.1-6/gap/R/hap.score.R | 1
gap-1.1-6/gap/R/mtdt2.R | 9 -
gap-1.1-6/gap/R/pfc.R | 14 +
gap-1.1-6/gap/R/tscc.R | 4
gap-1.1-6/gap/R/utils.R | 36 ++++
gap-1.1-6/gap/inst/doc/OpenMx |only
gap-1.1-6/gap/inst/doc/README | 17 +
gap-1.1-6/gap/inst/doc/comp.score |only
gap-1.1-6/gap/inst/doc/figures/lukas.png |binary
gap-1.1-6/gap/inst/doc/figures/qqunif.png |binary
gap-1.1-6/gap/inst/doc/gap.Rnw | 8
gap-1.1-6/gap/inst/doc/gap.pdf |binary
gap-1.1-6/gap/inst/doc/haplo.stats |only
gap-1.1-6/gap/inst/doc/klem |only
gap-1.1-6/gap/inst/doc/results/kinship_1.txt | 170 +++++++++----------
gap-1.1-6/gap/inst/doc/results/kinship_2.txt | 166 +++++++++---------
gap-1.1-6/gap/inst/doc/twinan90 |only
gap-1.1-6/gap/inst/doc/xls |only
gap-1.1-6/gap/man/comp.score.Rd | 2
gap-1.1-6/gap/man/gap-internal.Rd | 2
gap-1.1-6/gap/man/gap-package.Rd | 6
gap-1.1-6/gap/man/h2.Rd | 4
gap-1.1-6/gap/man/klem.Rd | 2
gap-1.1-6/gap/man/pfc.Rd | 4
gap-1.1-6/gap/src/2k.c | 141 ++++++++-------
gap-1.1-6/gap/src/2ld.c | 14 -
gap-1.1-6/gap/src/gcontrol.c | 68 +++----
gap-1.1-6/gap/src/gcx.c | 38 ++--
gap-1.1-6/gap/src/gif.c | 32 +--
gap-1.1-6/gap/src/hap.c | 185 ++++++++++----------
gap-1.1-6/gap/src/hwe.hardy.c | 23 +-
gap-1.1-6/gap/src/kin.morgan.c | 13 -
gap-1.1-6/gap/src/makeped.c | 239 ++++++++++++---------------
gap-1.1-6/gap/src/mia.c | 63 +++----
gap-1.1-6/gap/src/pfc.f | 44 ++--
gap-1.1-6/gap/src/pfc.sim.f | 69 +++----
gap-1.1-6/gap/src/pgc.c | 153 ++++++++---------
54 files changed, 849 insertions(+), 823 deletions(-)
Title: Dave Armstrong's Miscellaneous Functions
Diff between DAMisc versions 1.0 dated 2010-05-19 and 1.1 dated 2012-03-14
Description: This package contains a miscellaneous set of functions I
use in my teaching either at UWM or the ICPSR Summer Program.
Broadly, the functions help with presentation and
interpretation of GLMs.
Author: Dave Armstrong (UW-Milwaukee, Department of Political Science)
Maintainer: Dave Armstrong
DAMisc-1.0/DAMisc/R/factorplot.R |only
DAMisc-1.0/DAMisc/R/squares.R |only
DAMisc-1.0/DAMisc/data/FactorplotEx.rda |only
DAMisc-1.0/DAMisc/man/FactorplotEx.Rd |only
DAMisc-1.0/DAMisc/man/factorplot.Rd |only
DAMisc-1.0/DAMisc/man/squares.Rd |only
DAMisc-1.1/DAMisc/DESCRIPTION | 14 ++++++-----
DAMisc-1.1/DAMisc/MD5 |only
DAMisc-1.1/DAMisc/NAMESPACE |only
DAMisc-1.1/DAMisc/R/DAintfun2.R | 37 +++++++++++++++++++++++++++++--
DAMisc-1.1/DAMisc/R/binfit.R |only
DAMisc-1.1/DAMisc/R/btscs.R |only
DAMisc-1.1/DAMisc/R/glmChange.R |only
DAMisc-1.1/DAMisc/R/mnlSig.R |only
DAMisc-1.1/DAMisc/R/multiChange.R |only
DAMisc-1.1/DAMisc/R/ordChange.R |only
DAMisc-1.1/DAMisc/R/poisGOF.R |only
DAMisc-1.1/DAMisc/R/pre.R |only
DAMisc-1.1/DAMisc/R/searchVarLabels.R |only
DAMisc-1.1/DAMisc/R/simPredpolr.R |only
DAMisc-1.1/DAMisc/R/ziChange.R |only
DAMisc-1.1/DAMisc/data/aclp.rda |only
DAMisc-1.1/DAMisc/data/france.rda |only
DAMisc-1.1/DAMisc/man/DAMisc-package.Rd | 5 ----
DAMisc-1.1/DAMisc/man/DAintfun.Rd | 14 +++++------
DAMisc-1.1/DAMisc/man/DAintfun2.Rd | 15 ++++++++++--
DAMisc-1.1/DAMisc/man/aclp.Rd |only
DAMisc-1.1/DAMisc/man/binfit.Rd |only
DAMisc-1.1/DAMisc/man/btscs.Rd |only
DAMisc-1.1/DAMisc/man/france.Rd |only
DAMisc-1.1/DAMisc/man/glmChange.Rd |only
DAMisc-1.1/DAMisc/man/mnlSig.Rd |only
DAMisc-1.1/DAMisc/man/multiChange.Rd |only
DAMisc-1.1/DAMisc/man/ordChange.Rd |only
DAMisc-1.1/DAMisc/man/poisGOF.Rd |only
DAMisc-1.1/DAMisc/man/pre.Rd |only
DAMisc-1.1/DAMisc/man/print.pre.Rd |only
DAMisc-1.1/DAMisc/man/searchVarLabels.Rd |only
DAMisc-1.1/DAMisc/man/simPredpolr.Rd |only
DAMisc-1.1/DAMisc/man/ziChange.Rd |only
40 files changed, 63 insertions(+), 22 deletions(-)
Title: Multivariate Adaptive Regression Spline Models
Diff between earth versions 3.2-1 dated 2011-07-23 and 3.2-2 dated 2012-03-14
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression
Splines". (The term "MARS" is copyrighted and thus not used in
the name of the package.)
Author: Stephen Milborrow. Derived from mda:mars by Trevor Hastie and
Rob Tibshirani.
Maintainer: Stephen Milborrow
DESCRIPTION | 6
MD5 |only
NEWS | 7 -
R/earth.R | 24 ++-
R/earth.regress.R | 3
R/elegend.R | 2
R/plotd.R | 2
inst/doc/earth-notes.pdf |binary
inst/doc/figs/cube-transform.pdf |binary
inst/doc/figs/cv-detailed.pdf |binary
inst/doc/figs/cv-example.pdf |binary
inst/doc/figs/cv-folds.pdf | 2
inst/doc/figs/cv-plot-earth.pdf |binary
inst/doc/figs/cv-variation.pdf |binary
inst/doc/figs/cv.pdf |binary
inst/doc/figs/fda-earth.pdf |binary
inst/doc/figs/fda-lm.pdf |binary
inst/doc/figs/fda-plotmo.pdf |binary
inst/doc/figs/fda.pdf |binary
inst/doc/figs/learning-curve.pdf |binary
inst/doc/figs/ncross.pdf |binary
inst/doc/figs/negative-grsq.pdf |binary
inst/doc/figs/plot-earth.pdf |binary
inst/doc/figs/plotd-example.pdf | 2
inst/doc/figs/scoring.pdf | 2
inst/doc/figs/trees.pdf |binary
man/earth.Rd | 10 -
man/plot.earth.models.Rd | 2
src/allowed.c | 17 +-
src/allowed.h | 6
src/earth.c | 56 +++-----
src/earth.h | 12 -
src/tests/Rblas.lib |only
src/tests/Rdll.lib |only
src/tests/earth.times.bat | 4
src/tests/fast.postscript.R | 7 -
src/tests/test.earth.big.Rout.save | 8 -
src/tests/test.earth.big.bat | 2
src/tests/test.earth.cv.R | 2
src/tests/test.earth.cv.Rout.save | 10 -
src/tests/test.earth.cv.bat | 2
src/tests/test.earth.full.R | 206 +++++++++++++++---------------
src/tests/test.earth.full.Rout.save | 245 +++++++++++++++++-------------------
src/tests/test.earth.full.bat | 2
src/tests/test.earth.glm.Rout.save | 8 -
src/tests/test.earth.glm.bat | 2
src/tests/test.earthc.bat | 15 +-
src/tests/test.earthc.c | 5
src/tests/test.earthc.mak | 21 +--
src/tests/test.earthc.out.save | 79 +++++------
src/tests/test.earthmain.bat | 19 +-
src/tests/test.earthmain.gcc.bat | 20 +-
src/tests/test.plotd.Rout.save | 8 -
src/tests/test.plotd.bat | 2
54 files changed, 422 insertions(+), 398 deletions(-)
Title: Multivariate Methods Based on the Oja Median and Related
Concepts
Diff between OjaNP versions 0.9-4 dated 2010-02-12 and 0.9-5 dated 2012-03-14
Description: The package provides functions for the Oja median, Oja
signs and ranks and methods based upon them.
Author: Daniel Fischer, Jyrki Möttönen, Klaus Nordhausen, Daniel Vogel
Maintainer: Klaus Nordhausen
OjaNP-0.9-4/OjaNP/data/biochem.R |only
OjaNP-0.9-5/OjaNP/DESCRIPTION | 8 +-
OjaNP-0.9-5/OjaNP/MD5 |only
OjaNP-0.9-5/OjaNP/data/biochem.rda |only
OjaNP-0.9-5/OjaNP/inst/ChangeLog | 5 +
OjaNP-0.9-5/OjaNP/man/OjaNP-package.Rd | 4 -
OjaNP-0.9-5/OjaNP/src/Matrix2D.cpp | 42 ++++++-------
OjaNP-0.9-5/OjaNP/src/SubsetGenerator.cpp | 9 --
OjaNP-0.9-5/OjaNP/src/_Vector.cpp | 16 ++---
OjaNP-0.9-5/OjaNP/src/algorithms.cpp | 96 ++++++++++++++++--------------
OjaNP-0.9-5/OjaNP/src/error.h | 13 ++--
OjaNP-0.9-5/OjaNP/src/hyperplane.cpp | 2
OjaNP-0.9-5/OjaNP/src/index.cpp | 6 -
OjaNP-0.9-5/OjaNP/src/interface.cpp | 2
OjaNP-0.9-5/OjaNP/src/point.cpp | 1
OjaNP-0.9-5/OjaNP/src/vkm.cpp | 8 +-
16 files changed, 110 insertions(+), 102 deletions(-)
Title: Detection of structure from multilocus genetic data.
Diff between Geneland versions 4.0.0 dated 2012-02-15 and 4.0.1 dated 2012-03-14
Description: Stochastic simulation and MCMC inference of structure from
genetic data.
Author: Gilles Guillot, Filipe Santos, Arnaud Estoup
Maintainer: Gilles Guillot
ChangeLog | 4 ++-
DESCRIPTION | 8 +++---
MD5 | 10 ++++----
R/Geneland.GUI.R | 56 ++++++++++++++++++++++++++++++++++++++++-----
R/zzz.R | 2 -
vignettes/Geneland-Doc.pdf |binary
6 files changed, 64 insertions(+), 16 deletions(-)
Title: Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Diff between Dodge versions 0.3 dated 2011-09-28 and 0.6 dated 2012-03-14
Description: Various sampling plans are able to be compared using
evaluations of their OC, AOQ, ATI etc.
Author: Jonathan Godfrey and Raj Govindaraju
Maintainer:
Dodge-0.3/Dodge/R/ChainBinomial.R |only
Dodge-0.3/Dodge/R/ChainPoisson.R |only
Dodge-0.3/Dodge/R/CurtBinomial.R |only
Dodge-0.3/Dodge/R/DSPlanBinomial.R |only
Dodge-0.3/Dodge/R/DSPlanPoisson.R |only
Dodge-0.3/Dodge/R/SSPDesignBinomial.R |only
Dodge-0.3/Dodge/R/SSPDesignPoisson.R |only
Dodge-0.3/Dodge/R/SSPlanBinomial.R |only
Dodge-0.3/Dodge/R/SSPlanHyper.R |only
Dodge-0.3/Dodge/R/SSPlanPoisson.R |only
Dodge-0.3/Dodge/R/Sequential.R |only
Dodge-0.3/Dodge/R/VSPDesign.R |only
Dodge-0.3/Dodge/R/VSPKnown.R |only
Dodge-0.3/Dodge/R/VSPUnknown.R |only
Dodge-0.3/Dodge/R/plot.AccSampPlan.R |only
Dodge-0.3/Dodge/R/print.AccSampPlan.R |only
Dodge-0.6/Dodge/DESCRIPTION | 15 +++++-------
Dodge-0.6/Dodge/MD5 | 37 +++++++++++++------------------
Dodge-0.6/Dodge/NAMESPACE |only
Dodge-0.6/Dodge/R/Acceptance.r |only
Dodge-0.6/Dodge/R/Chain.r |only
Dodge-0.6/Dodge/R/Curtailed.r |only
Dodge-0.6/Dodge/R/Double.r |only
Dodge-0.6/Dodge/R/Sequential.r |only
Dodge-0.6/Dodge/R/Single.r |only
Dodge-0.6/Dodge/R/VSP.r |only
Dodge-0.6/Dodge/R/lot.r |only
Dodge-0.6/Dodge/inst |only
Dodge-0.6/Dodge/man/Dodge-package.Rd | 4 +--
Dodge-0.6/Dodge/man/SeqDesign.Rd |only
Dodge-0.6/Dodge/man/Sequential.Rd | 11 ++++-----
Dodge-0.6/Dodge/man/plot.AccSampPlan.Rd | 14 ++++++++---
Dodge-0.6/Dodge/man/print.AccSampPlan.Rd | 16 +++++++++----
33 files changed, 51 insertions(+), 46 deletions(-)
Title: Improved access for blind useRs
Diff between BrailleR versions 0.3 dated 2012-02-27 and 0.4 dated 2012-03-14
Description: Blind useRs do not have access to the graphical output
from R without printing the content of graph windows to an
embosser of some kind. This is not as immediate as is required
for efficient access to statistical output. The functions here
are created so that blind people can make even better use of R.
Author: Jonathan Godfrey
Maintainer: Jonathan Godfrey
DESCRIPTION | 8 +++---
MD5 | 7 +++--
R/R2txtExtraJG.r |only
R/R2txtJG.R | 58 +++++++++++++++++++-----------------------------
man/BrailleR-package.Rd | 4 +--
5 files changed, 33 insertions(+), 44 deletions(-)
Title: Species Identity and Evolution in R
Diff between spider versions 1.1-1 dated 2011-12-27 and 1.1-2 dated 2012-03-14
Description: A package for the analysis of species limits and DNA
barcoding data
Author: Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline
Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank
Maintainer: Samuel Brown
DESCRIPTION | 16 +++++++++-------
MD5 | 17 +++++++++--------
NEWS | 10 ++++++++++
R/read.GB.R | 4 ++--
R/search.BOLD.R | 36 ++++++++++++++++++++++++++++++------
R/stats.BOLD.R |only
data/anoteropsis.rda |binary
data/dolomedes.rda |binary
man/read.BOLD.Rd | 21 +++++++++++++++++----
man/spider-package.Rd | 4 ++--
10 files changed, 79 insertions(+), 29 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.25-4 dated 2012-02-29 and 1.25-5 dated 2012-03-14
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Also
supports three-dimensional point patterns, and space-time point
patterns in any number of dimensions. Contains over 1000
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, pixel images and
tessellations. Exploratory methods include K-functions,
nearest neighbour distance and empty space statistics, Fry
plots, pair correlation function, kernel smoothed intensity,
relative risk estimation with cross-validated bandwidth
selection, mark correlation functions, segregation indices,
mark dependence diagnostics etc. Point process models can be
fitted to point pattern data using functions ppm, kppm, slrm
similar to glm. Models may include dependence on covariates,
interpoint interaction, cluster formation and dependence on
marks. Fitted models can be simulated automatically. Also
provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation envelopes,
residuals, residual plots and Q-Q plots).
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
DESCRIPTION | 24 -
MD5 | 59 ++-
NEWS | 35 ++
R/Gmulti.R | 6
R/areadiff.R | 4
R/distances.R | 27 -
R/distfun.R | 8
R/measures.R | 6
R/mpl.R | 6
R/nncross.R | 155 ++++++---
R/rPerfect.R | 7
R/rho2hat.R |only
R/rhohat.R | 277 +++++++++++++----
R/wingeom.R | 4
inst/doc/getstart.pdf |binary
inst/doc/shapefiles.pdf |binary
man/Kcross.Rd | 2
man/Kest.Rd | 4
man/methods.rho2hat.Rd |only
man/nncross.Rd | 71 ++++
man/rho2hat.Rd |only
man/rhohat.Rd | 89 ++++-
man/spatstat-package.Rd | 1
src/Perfect.cc | 7
src/PerfectDGS.h | 5
src/PerfectDiggleGratton.h | 5
src/PerfectHardcore.h | 5
src/PerfectStrauss.h | 20 +
src/PerfectStraussHard.h | 5
src/nndist.h |only
src/nndistX.h |only
src/nndistance.c | 719 ++++++++++++++++-----------------------------
tests/alltests.R | 27 +
33 files changed, 883 insertions(+), 695 deletions(-)
Title: JSON for R
Diff between rjson versions 0.2.6 dated 2011-10-18 and 0.2.7 dated 2012-03-14
Description: Converts R object into JSON objects and vice-versa
Author: Alex Couture-Beil
Maintainer: Alex Couture-Beil
rjson-0.2.6/rjson/inst/doc/json_rpc_server.tex |only
rjson-0.2.7/rjson/DESCRIPTION | 10 +++++-----
rjson-0.2.7/rjson/MD5 | 16 +++++++++-------
rjson-0.2.7/rjson/NAMESPACE |only
rjson-0.2.7/rjson/R/json.R | 7 ++++++-
rjson-0.2.7/rjson/R/zzz.R | 6 +++---
rjson-0.2.7/rjson/inst/changelog.txt | 2 ++
rjson-0.2.7/rjson/inst/doc/json_rpc_server.pdf |binary
rjson-0.2.7/rjson/inst/unittests/test.tojson.r |only
rjson-0.2.7/rjson/man/toJSON.Rd | 3 ++-
rjson-0.2.7/rjson/src/dump.cpp |only
11 files changed, 27 insertions(+), 17 deletions(-)
Title: Hidden Markov Models simulations and estimations
Diff between RHmm versions 2.0.0 dated 2012-02-25 and 2.0.1 dated 2012-03-14
Description: Discrete, univariate or multivariate gaussian, mixture of
univariate or multivariate gaussian HMM functions for
simulation and estimation.
Author: Ollivier TARAMASCO, Sebastian Bauer
Maintainer: Ollivier TARAMASCO
DESCRIPTION | 12 +-
MD5 | 14 +-
R/RHmm-HyperNew.R | 229 -------------------------------------------------
data/data_mixture.rda |binary
data/n1d_3s.RData |binary
data/n3d_2s.RData |binary
data/weather.rda |binary
man/forwardBackward.rd | 21 +++-
8 files changed, 27 insertions(+), 249 deletions(-)
Title: Relative Simulator
Diff between relSim versions 0.1-33 dated 2012-03-07 and 0.1-34 dated 2012-03-14
Description: A set of tools to explore the behaviour statistics used
for forensic DNA interpretation when close relatives are
involved
Author: James M. Curran
Maintainer: James M. Curran
.dropbox |only
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
R/blockSim.R | 10 ++++++++--
desktop.ini |only
man/randomChild.Rd | 6 +++---
man/randomProfile.Rd | 2 +-
man/randomSib.Rd | 8 ++++----
8 files changed, 26 insertions(+), 19 deletions(-)
Title: Model diagnostics for population pharmacokinetic models
Diff between PKgraph versions 1.6 dated 2011-12-19 and 1.7 dated 2012-03-14
Description: PKgraph provides a graphical user interface for population
pharmacokinetic model diagnosis. It also provides an integrated
and comprehensive platform for the analysis of pharmacokinetic
data including exploratory data analysis, goodness of model
fit, model validation and model comparison. Results from a
variety of modeling fitting software, including NONMEM,
Monolix, SAS and R, can be used. PKgraph is programmed in R,
and uses the R packages lattice, ggplot2 for static graphics,
and rggobi for interactive graphics.
Author: Xiaoyong Sun
Maintainer: Xiaoyong Sun
PKgraph-1.6/PKgraph/inst/doc/PKgraph.tex |only
PKgraph-1.7/PKgraph/DESCRIPTION | 10 +++++-----
PKgraph-1.7/PKgraph/MD5 | 7 ++++---
PKgraph-1.7/PKgraph/NAMESPACE | 2 +-
PKgraph-1.7/PKgraph/vignettes |only
5 files changed, 10 insertions(+), 9 deletions(-)
Title: Analysis of evolutionary rates in an OU framework
Diff between OUwie versions 1.15 dated 2012-03-02 and 1.16 dated 2012-03-14
Description: Calculates and compares rate differences of continuous
character evolution under Brownian motion and a new set of
Ornstein-Uhlenbeck-based Hansen models that allow the strength
of selection and drift to vary across selective regimes.
Author: Jeremy M. Beaulieu
Maintainer: Jeremy M. Beaulieu
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
R/OUwie.R | 38 ++++++++++++++++++++++++--------------
R/varcov.ou.R | 3 ++-
R/weight.mat.R | 3 ++-
man/OUwie.Rd | 2 +-
6 files changed, 39 insertions(+), 27 deletions(-)
Title: Generalized Estimation Equation solver
Diff between gee versions 4.13-17 dated 2011-07-25 and 4.13-18 dated 2012-03-14
Description: Generalized Estimation Equation solver
Author: Vincent J Carey. Ported to R by Thomas Lumley (versions 3.13
and 4.4) and Brian Ripley
Maintainer: Brian Ripley
DESCRIPTION | 10 +++++-----
MD5 |only
R/ugee.R | 2 +-
src/ugee.c | 3 ---
src/ugee.h | 27 +--------------------------
5 files changed, 7 insertions(+), 35 deletions(-)