Title: Demonstrations for teaching and learning
Diff between TeachingDemos versions 2.7 dated 2010-08-09 and 2.8 dated 2012-03-16
Description: This package is a set of demonstration functions that can
be used in a classroom to demonstrate statistical concepts, or
on your own to better understand the concepts or the
programming.
Author: Greg Snow
Maintainer: Greg Snow
TeachingDemos-2.7/TeachingDemos/R/identify.Map.R |only
TeachingDemos-2.7/TeachingDemos/R/identify.polylist.R |only
TeachingDemos-2.7/TeachingDemos/R/project.Map.R |only
TeachingDemos-2.7/TeachingDemos/R/recenter.Map.R |only
TeachingDemos-2.7/TeachingDemos/data/state.vbm.rda |only
TeachingDemos-2.7/TeachingDemos/man/identify.Map.Rd |only
TeachingDemos-2.7/TeachingDemos/man/project.Map.Rd |only
TeachingDemos-2.7/TeachingDemos/man/recenter.Map.Rd |only
TeachingDemos-2.7/TeachingDemos/man/state.vbm.Rd |only
TeachingDemos-2.8/TeachingDemos/DESCRIPTION | 18
TeachingDemos-2.8/TeachingDemos/MD5 |only
TeachingDemos-2.8/TeachingDemos/NAMESPACE | 15
TeachingDemos-2.8/TeachingDemos/NEWS | 38 ++
TeachingDemos-2.8/TeachingDemos/R/R2txt.R | 206 +++++------
TeachingDemos-2.8/TeachingDemos/R/TkApprox.R | 7
TeachingDemos-2.8/TeachingDemos/R/TkBuildDist.R |only
TeachingDemos-2.8/TeachingDemos/R/TkSpline.R | 7
TeachingDemos-2.8/TeachingDemos/R/cal.R |only
TeachingDemos-2.8/TeachingDemos/R/cnvrt.coords.R | 1
TeachingDemos-2.8/TeachingDemos/R/dynIdentify.R | 44 +-
TeachingDemos-2.8/TeachingDemos/R/gnuplot.R | 33 -
TeachingDemos-2.8/TeachingDemos/R/gp.splot.R | 4
TeachingDemos-2.8/TeachingDemos/R/lattice.demo.R | 24 -
TeachingDemos-2.8/TeachingDemos/R/loess.demo.R | 2
TeachingDemos-2.8/TeachingDemos/R/mle.demo.R | 16
TeachingDemos-2.8/TeachingDemos/R/ms.face.R |only
TeachingDemos-2.8/TeachingDemos/R/mysymbols.R | 54 ++
TeachingDemos-2.8/TeachingDemos/R/petals.R |only
TeachingDemos-2.8/TeachingDemos/R/plot2script.R | 4
TeachingDemos-2.8/TeachingDemos/R/put.points.demo.R | 18
TeachingDemos-2.8/TeachingDemos/R/roc.demo.R | 8
TeachingDemos-2.8/TeachingDemos/R/rotate.cloud.R | 52 +-
TeachingDemos-2.8/TeachingDemos/R/rotate.wireframe.R | 52 +-
TeachingDemos-2.8/TeachingDemos/R/slider.R | 18
TeachingDemos-2.8/TeachingDemos/R/sliderv.R | 12
TeachingDemos-2.8/TeachingDemos/R/subplot.R | 35 +
TeachingDemos-2.8/TeachingDemos/R/tkBrush.R | 11
TeachingDemos-2.8/TeachingDemos/R/tkexamp.R | 140 +++++++
TeachingDemos-2.8/TeachingDemos/R/vis.binom.R | 32 -
TeachingDemos-2.8/TeachingDemos/R/vis.boxcox.R | 8
TeachingDemos-2.8/TeachingDemos/R/vis.boxcoxu.R | 8
TeachingDemos-2.8/TeachingDemos/R/vis.gamma.R | 130 +++---
TeachingDemos-2.8/TeachingDemos/R/vis.normal.R | 66 +--
TeachingDemos-2.8/TeachingDemos/R/vis.t.R | 48 +-
TeachingDemos-2.8/TeachingDemos/data/coin.faces.rda |binary
TeachingDemos-2.8/TeachingDemos/data/evap.rda |binary
TeachingDemos-2.8/TeachingDemos/data/gps.rda |binary
TeachingDemos-2.8/TeachingDemos/data/ldsgrowth.rda |only
TeachingDemos-2.8/TeachingDemos/data/outliers.rda |binary
TeachingDemos-2.8/TeachingDemos/data/stork.rda |binary
TeachingDemos-2.8/TeachingDemos/man/R2txt.Rd | 4
TeachingDemos-2.8/TeachingDemos/man/TeachingDemos-package.Rd | 2
TeachingDemos-2.8/TeachingDemos/man/TkBuildDist.Rd |only
TeachingDemos-2.8/TeachingDemos/man/TkListView.Rd | 6
TeachingDemos-2.8/TeachingDemos/man/cal.Rd |only
TeachingDemos-2.8/TeachingDemos/man/cnvrt.coords.Rd | 2
TeachingDemos-2.8/TeachingDemos/man/dice.Rd | 4
TeachingDemos-2.8/TeachingDemos/man/faces.Rd | 15
TeachingDemos-2.8/TeachingDemos/man/faces2.Rd | 14
TeachingDemos-2.8/TeachingDemos/man/gp.open.Rd | 8
TeachingDemos-2.8/TeachingDemos/man/ineq.Rd | 7
TeachingDemos-2.8/TeachingDemos/man/ldsgrowth.Rd |only
TeachingDemos-2.8/TeachingDemos/man/limits.g.Rd | 6
TeachingDemos-2.8/TeachingDemos/man/ms.polygram.Rd | 19 -
TeachingDemos-2.8/TeachingDemos/man/mysymbols.Rd | 32 +
TeachingDemos-2.8/TeachingDemos/man/petals.Rd |only
TeachingDemos-2.8/TeachingDemos/man/subplot.Rd | 9
TeachingDemos-2.8/TeachingDemos/man/tkexamp.Rd | 17
68 files changed, 787 insertions(+), 469 deletions(-)
Title: Rook - a web server interface for R
Diff between Rook versions 1.0-3 dated 2012-01-12 and 1.0-4 dated 2012-03-16
Description: This package contains the Rook specification and
convenience software for building and running Rook
applications. To get started, be sure and read the 'Rook' help
file first.
Author: Jeffrey Horner
Maintainer: Jeffrey Horner
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/Rhttpd.R | 55 ++++++++++++++++++++++++-------------------------------
3 files changed, 30 insertions(+), 37 deletions(-)
Title: Regression Estimation and Presentation
Diff between rockchalk versions 1.4 dated 2012-01-24 and 1.5.2 dated 2012-03-16
Description: A collection of functions for ease of presentation and
interpretation of regression analysis. See the outreg function
for a way to generate LaTeX tables of regression models and
mcGraph for creating 3-dimensional regression plots. The
package title "rockchalk" refers to the expression, "Rock Chalk
Jayhawk, Go K.U.".
Author: Paul E. Johnson
Maintainer: Paul E. Johnson
rockchalk-1.4/rockchalk/R/lmrc.R |only
rockchalk-1.4/rockchalk/inst/.Rhistory |only
rockchalk-1.5.2/rockchalk/DESCRIPTION | 12
rockchalk-1.5.2/rockchalk/MD5 | 46 +
rockchalk-1.5.2/rockchalk/NAMESPACE | 6
rockchalk-1.5.2/rockchalk/R/genCorrelatedData.R | 2
rockchalk-1.5.2/rockchalk/R/mcGraph.R | 4
rockchalk-1.5.2/rockchalk/R/meanCenter.R | 204 ++++---
rockchalk-1.5.2/rockchalk/R/perspEmpty.R | 4
rockchalk-1.5.2/rockchalk/R/plotCurves.R |only
rockchalk-1.5.2/rockchalk/R/plotPlane.R | 12
rockchalk-1.5.2/rockchalk/R/plotSlopes.R | 283 ++++------
rockchalk-1.5.2/rockchalk/R/residualCenter.R |only
rockchalk-1.5.2/rockchalk/R/testSlopes.R |only
rockchalk-1.5.2/rockchalk/inst/ChangeLog | 46 +
rockchalk-1.5.2/rockchalk/inst/doc |only
rockchalk-1.5.2/rockchalk/inst/examples/centeredRegression.R | 285 ++++++++---
rockchalk-1.5.2/rockchalk/inst/examples/meanCenter-ex.R | 9
rockchalk-1.5.2/rockchalk/inst/examples/noWords-001.R |only
rockchalk-1.5.2/rockchalk/inst/examples/plotCurves-ex.R |only
rockchalk-1.5.2/rockchalk/inst/examples/plotSlopes-ex.R |only
rockchalk-1.5.2/rockchalk/inst/examples/predict.rcreg-ex.R |only
rockchalk-1.5.2/rockchalk/man/meanCenter.Rd | 58 +-
rockchalk-1.5.2/rockchalk/man/plotCurves.Rd |only
rockchalk-1.5.2/rockchalk/man/plotPlane.Rd | 8
rockchalk-1.5.2/rockchalk/man/plotSlopes.Rd | 188 ++++---
rockchalk-1.5.2/rockchalk/man/residualCenter.Rd | 52 +-
rockchalk-1.5.2/rockchalk/man/testSlopes.Rd |only
rockchalk-1.5.2/rockchalk/vignettes |only
29 files changed, 801 insertions(+), 418 deletions(-)
Title: Extensible Markov Model (EMM) for Data Stream Clustering in R
Diff between rEMM versions 1.0-3 dated 2012-02-08 and 1.0-4 dated 2012-03-16
Description: This package implements TRACDS (Temporal Relationships
between Clusters for Data Streams) which is a generalization of
Extensible Markov Model (EMM). TRACDS adds a temporal or order
model to data stream clustering by superimposing a dynamically
adapting Markov Chain. This package implements EMM (TRACDS on
top of tNN data stream clustering). Development of this package
was supported in part by NSF IIS-0948893 and R21HG005912 from
the National Human Genome Research Institute.
Author: Michael Hahsler and Margaret H. Dunham
Maintainer: Michael Hahsler
DESCRIPTION | 11 ++++++-----
MD5 | 20 ++++++++++----------
R/plot.R | 2 +-
R/tNN.R | 3 +--
data/16S.rda |binary
data/Derwent.rda |binary
data/EMMTraffic.rda |binary
data/EMMsim.rda |binary
inst/doc/rEMM.Rnw | 26 +++++++++++++++-----------
inst/doc/rEMM.pdf |binary
man/plot.EMM.Rd | 3 ++-
11 files changed, 35 insertions(+), 30 deletions(-)
Title: Nondetects And Data Analysis for environmental data
Diff between NADA versions 1.5-3 dated 2010-12-22 and 1.5-4 dated 2012-03-16
Description: Contains methods described by Dennis R. Helsel in his book
"Nondetects And Data Analysis: Statistics for Censored
Environmental Data"
Author: Lopaka Lee
Maintainer: Lopaka Lee
NADA-1.5-3/NADA/data/Ag.R |only
NADA-1.5-3/NADA/data/Arsenic.R |only
NADA-1.5-3/NADA/data/AsExample.R |only
NADA-1.5-3/NADA/data/Atra.R |only
NADA-1.5-3/NADA/data/AtraAlt.R |only
NADA-1.5-3/NADA/data/Atrazine.R |only
NADA-1.5-3/NADA/data/Bloodlead.R |only
NADA-1.5-3/NADA/data/Cadmium.R |only
NADA-1.5-3/NADA/data/ChlfmCA.R |only
NADA-1.5-3/NADA/data/CuZn.R |only
NADA-1.5-3/NADA/data/CuZnAlt.R |only
NADA-1.5-3/NADA/data/DFe.R |only
NADA-1.5-3/NADA/data/DOC.R |only
NADA-1.5-3/NADA/data/Golden.R |only
NADA-1.5-3/NADA/data/Hatchery.R |only
NADA-1.5-3/NADA/data/HgFish.R |only
NADA-1.5-3/NADA/data/MDCu.R |only
NADA-1.5-3/NADA/data/NADA.As.R |only
NADA-1.5-3/NADA/data/Oahu.R |only
NADA-1.5-3/NADA/data/Recon.R |only
NADA-1.5-3/NADA/data/Roach.R |only
NADA-1.5-3/NADA/data/SedPb.R |only
NADA-1.5-3/NADA/data/ShePyrene.R |only
NADA-1.5-3/NADA/data/Silver.R |only
NADA-1.5-3/NADA/data/TCE.R |only
NADA-1.5-3/NADA/data/TCEReg.R |only
NADA-1.5-3/NADA/data/Tbl1one.R |only
NADA-1.5-3/NADA/data/Thames.R |only
NADA-1.5-4/NADA/DESCRIPTION | 6 ++--
NADA-1.5-4/NADA/MD5 |only
NADA-1.5-4/NADA/R/All.R | 8 ++---
NADA-1.5-4/NADA/R/km.R | 2 -
NADA-1.5-4/NADA/R/mle.R | 2 -
NADA-1.5-4/NADA/R/ros.R | 50 +++++++++++++++++++------------------
NADA-1.5-4/NADA/data/Ag.rda |only
NADA-1.5-4/NADA/data/Arsenic.rda |only
NADA-1.5-4/NADA/data/AsExample.rda |only
NADA-1.5-4/NADA/data/Atra.rda |only
NADA-1.5-4/NADA/data/AtraAlt.rda |only
NADA-1.5-4/NADA/data/Atrazine.rda |only
NADA-1.5-4/NADA/data/Bloodlead.rda |only
NADA-1.5-4/NADA/data/Cadmium.rda |only
NADA-1.5-4/NADA/data/ChlfmCA.rda |only
NADA-1.5-4/NADA/data/CuZn.rda |only
NADA-1.5-4/NADA/data/CuZnAlt.rda |only
NADA-1.5-4/NADA/data/DFe.rda |only
NADA-1.5-4/NADA/data/DOC.rda |only
NADA-1.5-4/NADA/data/Golden.rda |only
NADA-1.5-4/NADA/data/Hatchery.rda |only
NADA-1.5-4/NADA/data/HgFish.rda |only
NADA-1.5-4/NADA/data/MDCu.rda |only
NADA-1.5-4/NADA/data/NADA.As.rda |only
NADA-1.5-4/NADA/data/Oahu.rda |only
NADA-1.5-4/NADA/data/Recon.rda |only
NADA-1.5-4/NADA/data/Roach.rda |only
NADA-1.5-4/NADA/data/SedPb.rda |only
NADA-1.5-4/NADA/data/ShePyrene.rda |only
NADA-1.5-4/NADA/data/Silver.rda |only
NADA-1.5-4/NADA/data/TCE.rda |only
NADA-1.5-4/NADA/data/TCEReg.rda |only
NADA-1.5-4/NADA/data/Tbl1one.rda |only
NADA-1.5-4/NADA/data/Thames.rda |only
62 files changed, 35 insertions(+), 33 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-3 dated 2012-02-23 and 0.2-4 dated 2012-03-16
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
binaries are provided on CRAN. Mac Intel OS X binaries are not
provided on CRAN, but can be installed from the CRAN Extras
repository with: setRepositories(ind=1:2);
install.packages('rgeos').
Author: Roger Bivand and Colin Rundel
Maintainer: Roger Bivand
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
R/rgeos_misc.R | 2 ++
inst/ChangeLog | 9 +++++++++
inst/SVN_VERSION | 2 +-
src/symbols.rds |only
7 files changed, 31 insertions(+), 10 deletions(-)
Title: Microscopy Based Cytometry Data Analysis Package
Diff between Rcell versions 1.1-7 dated 2011-12-13 and 1.1-8 dated 2012-03-16
Description: This package provides functions to analyze microscopy
based cytometry datasets. It was originally design for
Cell-ID's output, but can be adapted to other image
segmentation programs. It includes functions for loading,
manipulating and plotting the data. It can also create cell's
images montages in a user defined layout.
Author: Alan Bush
Maintainer: Alan Bush
Rcell-1.1-7/Rcell/R/cell-counter.R |only
Rcell-1.1-7/Rcell/Rcell-Ex.R |only
Rcell-1.1-7/Rcell/inst/doc/Cell-ID-vars.Rnw |only
Rcell-1.1-7/Rcell/inst/doc/Rcell.Rnw |only
Rcell-1.1-7/Rcell/inst/doc/cimage.Rnw |only
Rcell-1.1-7/Rcell/inst/doc/cplot.Rnw |only
Rcell-1.1-7/Rcell/inst/doc/transform.Rnw |only
Rcell-1.1-7/Rcell/man/cell-counter.rd |only
Rcell-1.1-7/Rcell/vignettes/Sweave.sty |only
Rcell-1.1-8/Rcell/DESCRIPTION | 23
Rcell-1.1-8/Rcell/MD5 | 73
Rcell-1.1-8/Rcell/NAMESPACE | 17
Rcell-1.1-8/Rcell/NEWS | 11
Rcell-1.1-8/Rcell/R/Rcell.R | 3796 +++++++++++------------
Rcell-1.1-8/Rcell/R/append.R | 5
Rcell-1.1-8/Rcell/R/cell.counter.R |only
Rcell-1.1-8/Rcell/R/cell.image.R | 187 -
Rcell-1.1-8/Rcell/R/misc.R | 166 -
Rcell-1.1-8/Rcell/R/plot.R | 225 +
Rcell-1.1-8/Rcell/build/Rcell.pdf |binary
Rcell-1.1-8/Rcell/build/partial.rdb |binary
Rcell-1.1-8/Rcell/inst/doc/Cell-ID-vars.pdf |binary
Rcell-1.1-8/Rcell/inst/doc/Rcell.pdf |binary
Rcell-1.1-8/Rcell/inst/doc/cimage.pdf |binary
Rcell-1.1-8/Rcell/inst/doc/cplot.pdf |binary
Rcell-1.1-8/Rcell/inst/doc/transform.pdf |binary
Rcell-1.1-8/Rcell/man/ACL394.rd | 2
Rcell-1.1-8/Rcell/man/Rcell-package.Rd | 27
Rcell-1.1-8/Rcell/man/as.data.frame.cell.data.rd | 147
Rcell-1.1-8/Rcell/man/cell.counter.rd |only
Rcell-1.1-8/Rcell/man/cell.hclust.rd | 42
Rcell-1.1-8/Rcell/man/cimage.rd | 179 -
Rcell-1.1-8/Rcell/man/cplot.Rd | 313 -
Rcell-1.1-8/Rcell/man/get.cell.image.rd | 203 -
Rcell-1.1-8/Rcell/man/ggplot2.themes.rd |only
Rcell-1.1-8/Rcell/man/merge.cell.data.rd | 6
Rcell-1.1-8/Rcell/man/misc.rd | 3
Rcell-1.1-8/Rcell/man/plot.Image.rd |only
Rcell-1.1-8/Rcell/man/show.img.Rd | 14
Rcell-1.1-8/Rcell/man/transform.cell.image.rd | 135
Rcell-1.1-8/Rcell/vignettes/Rcell.Rnw | 14
Rcell-1.1-8/Rcell/vignettes/cimage.Rnw | 112
Rcell-1.1-8/Rcell/vignettes/cplot.Rnw | 43
Rcell-1.1-8/Rcell/vignettes/transform.Rnw | 2
44 files changed, 3126 insertions(+), 2619 deletions(-)
Title: Korean NLP Package
Diff between KoNLP versions 0.0-9.2 dated 2012-02-10 and 0.7 dated 2012-03-16
Description: Korean language processing package. Morphlogical analyzer,
POS tagger, Keystroke converter, Hangul automata...
Author: Heewon Jeon
Maintainer: Heewon Jeon
KoNLP-0.0-9.2/KoNLP/inst/javasrc |only
KoNLP-0.0-9.2/KoNLP/man/onLoad.Rd |only
KoNLP-0.7/KoNLP/DESCRIPTION | 10 -
KoNLP-0.7/KoNLP/MD5 | 62 ++------
KoNLP-0.7/KoNLP/NAMESPACE | 4
KoNLP-0.7/KoNLP/NEWS | 14 ++
KoNLP-0.7/KoNLP/R/KoAnalyzerRun.R | 8 -
KoNLP-0.7/KoNLP/R/manageDic.R | 168 +++++++++++++++++++++++-
KoNLP-0.7/KoNLP/R/onLoad.R | 39 ++++-
KoNLP-0.7/KoNLP/R/sysdata.rda |binary
KoNLP-0.7/KoNLP/inst/dics/data/kE/dic_user2.txt |only
KoNLP-0.7/KoNLP/inst/java/ko.jar |binary
KoNLP-0.7/KoNLP/man/MorphAnalyzer.Rd | 2
KoNLP-0.7/KoNLP/man/SimplePos09.Rd | 2
KoNLP-0.7/KoNLP/man/SimplePos22.Rd | 2
KoNLP-0.7/KoNLP/man/backupUsrDic.Rd |only
KoNLP-0.7/KoNLP/man/mergeUserDic.Rd |only
KoNLP-0.7/KoNLP/man/reloadAllDic.Rd | 11 +
KoNLP-0.7/KoNLP/man/restoreUsrDic.Rd |only
19 files changed, 251 insertions(+), 71 deletions(-)
Title: Enhanced routines for plotting and analyzing valued relational
data.
Diff between ElectroGraph versions 0.9.0 dated 2011-10-10 and 0.9.2 dated 2012-03-16
Description: This package contains routines and procedures for
relational data, namely considerations for valued ties. In
particular, relative distances may also be calculated using
Ohmic social conductance methods.
Author: Andrew C. Thomas
Maintainer: Andrew C. Thomas
ElectroGraph-0.9.0/ElectroGraph/man/plot.wedding.cake.Rd |only
ElectroGraph-0.9.2/ElectroGraph/DESCRIPTION | 8 +-
ElectroGraph-0.9.2/ElectroGraph/MD5 | 25 ++++----
ElectroGraph-0.9.2/ElectroGraph/NAMESPACE | 9 ++
ElectroGraph-0.9.2/ElectroGraph/R/electrograph-routines.R | 16 +++--
ElectroGraph-0.9.2/ElectroGraph/R/plot-routines.R | 21 +++++-
ElectroGraph-0.9.2/ElectroGraph/man/dist.coords.Rd |only
ElectroGraph-0.9.2/ElectroGraph/man/wedding.cake.plot.Rd |only
ElectroGraph-0.9.2/ElectroGraph/src/Makevars | 2
ElectroGraph-0.9.2/ElectroGraph/src/electrograph-routines.cpp | 31 +++++-----
ElectroGraph-0.9.2/ElectroGraph/src/geodesic-routines.cpp | 5 -
ElectroGraph-0.9.2/ElectroGraph/src/layout-adapted-nw.c | 5 -
ElectroGraph-0.9.2/ElectroGraph/src/network-projections.cpp | 27 ++++++++
ElectroGraph-0.9.2/ElectroGraph/src/scythestat-act/error.h | 9 +-
ElectroGraph-0.9.2/ElectroGraph/src/scythestat-act/optimize.h | 3
15 files changed, 114 insertions(+), 47 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-12-05 0.73-0
2010-04-05 0.72-1
2005-12-08 0.72
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-19 0.4-1
2011-08-18 0.4-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-21 0.7-0
2012-01-18 0.6-1
Title: Semi Parametric Distribution
Diff between spd versions 1.6 dated 2011-09-14 and 1.7 dated 2012-03-16
Description: Semi Parametric Piecewise Distribution
Author: alexios ghalanos
Maintainer: alexios ghalanos
ChangeLog |only
DESCRIPTION | 10 +++++-----
MD5 | 11 ++++++-----
man/plot-methods.Rd | 4 ++--
man/spd-methods.Rd | 4 ++--
man/spd-package.Rd | 8 ++++----
man/spdfit-methods.Rd | 4 ++--
7 files changed, 21 insertions(+), 20 deletions(-)
Title: Probabilities for Pedigrees given DNA data
Diff between Familias versions 1.0 dated 2012-03-08 and 1.1 dated 2012-03-16
Description: This package represents a bare-bones implementation of an
interface to the core Familias functions (www.familias.name),
which are programmed in C++. The package itself functions as a
kind of database, where information about persons, pedigrees,
allele systems and observations for persons are entered
stepwise. In the end, probability calculations are made.
Author: Petter Mostad and Thore Egeland
Maintainer: Petter Mostad
DESCRIPTION | 11 ++++++-----
MD5 | 12 ++++++++----
NAMESPACE | 3 +++
R/postFamilias.R |only
R/preFamilias.R |only
man/postFamilias.Rd |only
man/preFamilias.Rd |only
src/FamInterface.cpp | 33 ++++++++++++++++++++++-----------
src/Pedigree.cpp | 24 ++++++++++++++++--------
9 files changed, 55 insertions(+), 28 deletions(-)
Title: Structural Equation Modeling Using Partial Least Squares
Diff between semPLS versions 1.0-5 dated 2011-12-22 and 1.0-6 dated 2012-03-16
Description: Fits structural equation models using partial least
squares (PLS). The PLS approach is referred to as
'soft-modeling' technique requiring no distributional
assumptions on the observed data.
Author: Armin Monecke
Maintainer: Armin Monecke
DESCRIPTION | 15 +++++++++------
MD5 | 12 ++++++------
NAMESPACE | 17 ++++++++++++-----
NEWS | 6 ++++++
R/plots.R | 24 ++++++++++++++++--------
data/ECSImobi.rda |binary
man/bootsempls.Rd | 11 ++++++-----
7 files changed, 55 insertions(+), 30 deletions(-)
Title: Kernel smoothing
Diff between ks versions 1.8.6 dated 2012-02-15 and 1.8.7 dated 2012-03-16
Description: Kernel smoothers for univariate and multivariate data
Author: Tarn Duong
Maintainer: Tarn Duong
ks-1.8.6/ks/R/deconv-kde.R |only
ks-1.8.7/ks/CHANGELOG | 7 +
ks-1.8.7/ks/DESCRIPTION | 10 -
ks-1.8.7/ks/MD5 | 27 +---
ks-1.8.7/ks/NAMESPACE | 2
ks-1.8.7/ks/R/kdde.R | 10 -
ks-1.8.7/ks/R/kde-test.R | 2
ks-1.8.7/ks/R/normal.R | 275 ++++++++++++++++++++++++++++++++---------
ks-1.8.7/ks/R/prelim.R | 146 ++++++++++++++-------
ks-1.8.7/ks/R/psins.R | 2
ks-1.8.7/ks/R/selector.R | 55 ++++----
ks-1.8.7/ks/inst/doc/kde.pdf |binary
ks-1.8.7/ks/man/Hamise.mixt.Rd | 10 +
ks-1.8.7/ks/man/Hpi.Rd | 9 -
ks-1.8.7/ks/man/Hscv.Rd | 25 +--
15 files changed, 400 insertions(+), 180 deletions(-)
Title: Analyzing case-parent triad and/or case-control data with SNP
haplotypes
Diff between Haplin versions 4.0 dated 2012-01-27 and 4.1 dated 2012-03-16
Description: Haplin performs a genetic association analysis of
case-parent triad (trio) data with multiple markers. It can
also incorporate complete or incomplete control triads, for
instance independent control children. Estimation is based on
haplotypes, for instance SNP haplotypes, even though phase is
not known from the genetic data. Haplin estimates relative risk
(RR + conf.int.) and p-value associated with each haplotype. It
uses maximum likelihood estimation to make optimal use of data
from triads with missing genotypic data, for instance if some
SNPs has not been typed for some individuals. Haplin also
allows estimation of effects of maternal haplotypes,
particularly appropriate in perinatal epidemiology.
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing
DESCRIPTION | 11 +--
MD5 | 25 +++----
NAMESPACE | 38 +++++-----
R/f.check.pars.R | 11 ++-
R/f.data.ready.R | 4 -
R/f.get.data.R |only
R/f.ped.to.mfc.R | 2
R/gwaaToHaplin.R | 10 ++
R/haplin.R | 37 +---------
R/haplinSlide.R | 113 ++++++++++++--------------------
R/haplinStrat.R | 30 +-------
R/output.R | 2
inst/doc/Haplin_data_format.pdf |binary
man/haplinSlide.Rd | 141 ++++++++++++++++++++--------------------
14 files changed, 184 insertions(+), 240 deletions(-)
Title: Procedures to generate IRT adaptive tests (CAT)
Diff between catR versions 2.1 dated 2011-12-05 and 2.2 dated 2012-03-16
Description: The catR package allows the generation of response
patterns under computerized adaptive testing (CAT) framework,
with the choice of several starting rules, next item selection
routines, stopping rules and ability estimators. Control
methods for item exposure and content balancing are also
included.
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada)
Maintainer: David Magis
catR-2.1/catR/data/tcals.txt |only
catR-2.1/catR/inst/doc/Rd2.pdf |only
catR-2.2/catR/DESCRIPTION | 21 +++++++--------
catR-2.2/catR/MD5 | 45 ++++++++++++++++-----------------
catR-2.2/catR/NAMESPACE |only
catR-2.2/catR/NEWS | 12 ++++++++
catR-2.2/catR/R/randomCAT.R | 8 ++---
catR-2.2/catR/data/tcals.txt.gz |only
catR-2.2/catR/inst/doc/catR-manual.pdf |only
catR-2.2/catR/man/EPV.Rd | 3 ++
catR-2.2/catR/man/Ii.Rd | 5 ++-
catR-2.2/catR/man/MEI.Rd | 3 ++
catR-2.2/catR/man/MWI.Rd | 3 ++
catR-2.2/catR/man/OIi.Rd | 3 ++
catR-2.2/catR/man/Pi.Rd | 3 ++
catR-2.2/catR/man/createItemBank.Rd | 3 ++
catR-2.2/catR/man/eapEst.Rd | 3 ++
catR-2.2/catR/man/eapSem.Rd | 3 ++
catR-2.2/catR/man/nextItem.Rd | 3 ++
catR-2.2/catR/man/randomCAT.Rd | 3 ++
catR-2.2/catR/man/semTheta.Rd | 3 ++
catR-2.2/catR/man/startItems.Rd | 5 +++
catR-2.2/catR/man/tcals.Rd | 3 ++
catR-2.2/catR/man/test.cbList.Rd | 4 ++
catR-2.2/catR/man/testList.Rd | 4 ++
catR-2.2/catR/man/thetaEst.Rd | 3 ++
26 files changed, 105 insertions(+), 38 deletions(-)
Title: Benchmark dose analysis for dose-response data
Diff between bmd versions 0.2 dated 2010-02-05 and 0.5 dated 2012-03-16
Description: Benchmark dose analysis for continuous and quantal
dose-response data.
Author: Christian Ritz
Maintainer: Christian Ritz
DESCRIPTION | 8 ++--
MD5 |only
R/bmd.R | 70 +++++++++++++++++++++++++++++++++++++++++-
man/bmd.Rd | 98 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++----
4 files changed, 164 insertions(+), 12 deletions(-)
Title: Benchmark Experiments Toolbox
Diff between benchmark versions 0.3-3 dated 2012-01-30 and 0.3-4 dated 2012-03-16
Description: The benchmark package provides a toolbox for setup,
execution and analysis of benchmark experiments. Main focus is
the analysis of data accumulating during the execution -- one
primary objective is the statistical correct computation of the
candidate algorithms' order.
Author: Manuel J. A. Eugster
Maintainer: Manuel J. A. Eugster
benchmark-0.3-3/benchmark/man/DatasetCharacteristics.Rd |only
benchmark-0.3-3/benchmark/man/Paircomp.Rd |only
benchmark-0.3-3/benchmark/man/benchmark-generics.Rd |only
benchmark-0.3-4/benchmark/DESCRIPTION | 26 +-
benchmark-0.3-4/benchmark/MD5 | 94 ++++---
benchmark-0.3-4/benchmark/NAMESPACE | 77 +++---
benchmark-0.3-4/benchmark/NEWS | 9
benchmark-0.3-4/benchmark/R/algperf-beplot0.R | 53 +---
benchmark-0.3-4/benchmark/R/algperf-paircomp.R | 84 +++----
benchmark-0.3-4/benchmark/R/algperf-preference.R | 18 -
benchmark-0.3-4/benchmark/R/algperf-visualizations.R | 42 ---
benchmark-0.3-4/benchmark/R/algperf.R | 55 +---
benchmark-0.3-4/benchmark/R/as.psychobench.R |only
benchmark-0.3-4/benchmark/R/as.warehouse.R | 29 +-
benchmark-0.3-4/benchmark/R/benchmark.R | 64 +++--
benchmark-0.3-4/benchmark/R/bsgraph.R | 11
benchmark-0.3-4/benchmark/R/bsplot.R | 14 -
benchmark-0.3-4/benchmark/R/datachar-visualizations.R | 18 -
benchmark-0.3-4/benchmark/R/dataset-characteristics.R | 47 +--
benchmark-0.3-4/benchmark/R/dataset-characterization.R | 17 +
benchmark-0.3-4/benchmark/R/dataset.R | 13 -
benchmark-0.3-4/benchmark/R/proto.R | 2
benchmark-0.3-4/benchmark/R/testprocedure.R | 57 ++--
benchmark-0.3-4/benchmark/R/testres-analysis.R | 4
benchmark-0.3-4/benchmark/R/testres-visualizations.R | 7
benchmark-0.3-4/benchmark/R/warehouse.R | 53 +++-
benchmark-0.3-4/benchmark/data/monks3raw.RData |binary
benchmark-0.3-4/benchmark/data/uci621rel.RData |binary
benchmark-0.3-4/benchmark/demo/benchplot.R | 13 -
benchmark-0.3-4/benchmark/demo/lsbenchplot-cs621-atypes.R | 11
benchmark-0.3-4/benchmark/demo/lsbenchplot-cs621.R | 19 -
benchmark-0.3-4/benchmark/demo/lsbenchplot-gh.R | 19 -
benchmark-0.3-4/benchmark/inst/doc/Package-Concept.dia |only
benchmark-0.3-4/benchmark/man/StatlogCharacteristics.Rd |only
benchmark-0.3-4/benchmark/man/TestProcedure.Rd | 42 ++-
benchmark-0.3-4/benchmark/man/algperf-paircomp.Rd | 68 +++--
benchmark-0.3-4/benchmark/man/algperf-visualization.Rd | 71 +++---
benchmark-0.3-4/benchmark/man/as.dataset.Rd | 49 ++--
benchmark-0.3-4/benchmark/man/as.psychobench.Rd |only
benchmark-0.3-4/benchmark/man/as.relation.PaircompDecision.Rd |only
benchmark-0.3-4/benchmark/man/as.warehouse.Rd | 46 ++-
benchmark-0.3-4/benchmark/man/benchmark-comptime.Rd | 36 +--
benchmark-0.3-4/benchmark/man/benchmark-sampling.Rd | 45 +--
benchmark-0.3-4/benchmark/man/benchmark.Rd | 63 +++--
benchmark-0.3-4/benchmark/man/beplot0.Rd | 118 ++++++----
benchmark-0.3-4/benchmark/man/bsgraph0.Rd | 69 +++--
benchmark-0.3-4/benchmark/man/bsplot0.Rd | 75 ++++--
benchmark-0.3-4/benchmark/man/characterize.Rd | 52 +++-
benchmark-0.3-4/benchmark/man/datachar-visualization.Rd | 52 ++--
benchmark-0.3-4/benchmark/man/subset.AlgorithmPerformance.Rd | 28 +-
benchmark-0.3-4/benchmark/man/testres-visualization.Rd | 19 +
benchmark-0.3-4/benchmark/man/warehouse.Rd | 99 ++++----
52 files changed, 1030 insertions(+), 758 deletions(-)
Title: Simplified Bayesian Sensitivity Analysis
Diff between SBSA versions 0.1.2 dated 2011-12-05 and 0.2.0 dated 2012-03-16
Description: Simplified Bayesian Sensitivity Analysis
Author: Davor Cubranic and Paul Gustafson
Maintainer: Davor Cubranic
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/fitSBSA.R | 8 +++++++-
inst/doc/SBSA-introduction.Rnw | 14 +++++++-------
inst/doc/SBSA-introduction.pdf |binary
5 files changed, 23 insertions(+), 17 deletions(-)
Title: Recursively Partitioned Mixture Model
Diff between RPMM versions 1.06 dated 2010-08-10 and 1.10 dated 2012-03-16
Description: Recursively Partitioned Mixture Model for Beta and
Gaussian Mixtures. This is a model-based clustering algorithm
that returns a hierarchy of classes, similar to hierarchical
clustering, but also similar to finite mixture models.
Author: E. Andres Houseman, Sc.D.
Maintainer: E. Andres Houseman
DESCRIPTION | 14 +++++++-------
MD5 |only
NAMESPACE |only
R/betaRPMM.R | 11 ++++-------
R/gaussRPMM.R | 11 ++++-------
R/rpmmPredict.R |only
man/ebayes.Rd |only
man/glmLC.Rd |only
man/llikeRPMMObject.Rd |only
man/predict.blcTree.Rd |only
man/predict.glcTree.Rd |only
11 files changed, 15 insertions(+), 21 deletions(-)
Title: OLS growth curve trajectories
Diff between OLScurve versions 0.1.2 dated 2012-02-20 and 0.1.3 dated 2012-03-16
Description: Provides tools for more easily organizing and plotting
individual ordinary least square (OLS) growth curve
trajectories.
Author: Phil Chalmers
Maintainer: Phil Chalmers
OLScurve-0.1.2/OLScurve/dev-OLScurve.R |only
OLScurve-0.1.3/OLScurve/.gitignore | 7 -
OLScurve-0.1.3/OLScurve/COPYING |only
OLScurve-0.1.3/OLScurve/DESCRIPTION | 9 -
OLScurve-0.1.3/OLScurve/MD5 | 18 +-
OLScurve-0.1.3/OLScurve/NEWS | 6
OLScurve-0.1.3/OLScurve/OLScurve.Rproj | 6
OLScurve-0.1.3/OLScurve/R/OLScurve.R | 21 +--
OLScurve-0.1.3/OLScurve/R/parplot.R | 2
OLScurve-0.1.3/OLScurve/R/subjplot.R | 187 +++++++++++++++-------------
OLScurve-0.1.3/OLScurve/inst/doc/OLSexp.pdf |binary
OLScurve-0.1.3/OLScurve/man/OLScurve.Rd | 2
12 files changed, 144 insertions(+), 114 deletions(-)
Title: Non-clustered heatmap alternatives
Diff between NeatMap versions 0.3.4 dated 2010-04-23 and 0.3.5 dated 2012-03-16
Description: NeatMap is a package to create heatmap like plots in 2 and
3 dimensions, without the need for cluster analysis. Like the
heatmap, the plots created by NeatMap display both a
dimensionally reduced representation of the data as well as the
data itself. They are intended to be used in conjunction with
dimensional reduction techniques such as PCA.
Author: Satwik Rajaram and Yoshi Oono
Maintainer: Satwik Rajaram
DESCRIPTION | 8 ++++----
MD5 |only
R/CircularPlot.R | 2 +-
R/LinePlot.R | 2 +-
4 files changed, 6 insertions(+), 6 deletions(-)
Title: A package for spatial visualization with Google Maps and
OpenStreetMap
Diff between ggmap versions 1.2 dated 2012-03-01 and 1.3 dated 2012-03-16
Description: ggmap allows for the easy visualization of spatial data
and models on top of Google Maps or OpenStreetMaps using
ggplot2.
Author: David Kahle
Maintainer: David Kahle
DESCRIPTION | 13 +--
MD5 | 30 +++++--
NAMESPACE | 7 +
R/geocode.R | 127 ++++++++++++++++++++++++++++----
R/ggmap.R | 5 +
R/ggmapplot.R | 193 ++++++++++++++++++++++++++++++++++++++++++-------
R/mapdist.R |only
R/qmap.R | 35 +++++++-
R/revgeocode.R |only
R/route.R |only
inst/NEWS | 21 +++++
man/distQueryCheck.Rd |only
man/geocode.Rd | 27 ++++++
man/geom_leg.Rd |only
man/ggmapplot.Rd | 126 +++++++++++++++++++++++++++----
man/legs2route.Rd |only
man/mapdist.Rd |only
man/qmap.Rd | 10 ++
man/revgeocode.Rd |only
man/route.Rd |only
man/routeQueryCheck.Rd |only
21 files changed, 510 insertions(+), 84 deletions(-)
Title: provide an easy to use framework to conduct simulation
Diff between ezsim versions 0.5.1 dated 2011-09-13 and 0.5.3 dated 2012-03-16
Description: ezsim provides a handy way to run simulation and examine
its result
Author: TszKin Julian Chan
Maintainer: TszKin Julian Chan
ezsim-0.5.1/ezsim/NEWS |only
ezsim-0.5.1/ezsim/R/ezsim.R |only
ezsim-0.5.1/ezsim/man/add2DataFrame.Rd |only
ezsim-0.5.1/ezsim/man/getScalarsName.Rd |only
ezsim-0.5.1/ezsim/man/getScalarsName.ezsim.Rd |only
ezsim-0.5.1/ezsim/man/getScalarsName.summary.ezsim.Rd |only
ezsim-0.5.1/ezsim/man/jb.test.Rd |only
ezsim-0.5.1/ezsim/man/label_both_parsed_recode.Rd |only
ezsim-0.5.1/ezsim/man/recode.Rd |only
ezsim-0.5.1/ezsim/man/run.function.Rd |only
ezsim-0.5.1/ezsim/man/setOthers.Rd |only
ezsim-0.5.1/ezsim/man/setOthers.parameterDef.Rd |only
ezsim-0.5.1/ezsim/man/setScalars.Rd |only
ezsim-0.5.1/ezsim/man/setScalars.parameterDef.Rd |only
ezsim-0.5.1/ezsim/man/test.parameterDef.Rd |only
ezsim-0.5.3/ezsim/DESCRIPTION | 14 -
ezsim-0.5.3/ezsim/MD5 | 92 ++++---
ezsim-0.5.3/ezsim/NAMESPACE | 50 +---
ezsim-0.5.3/ezsim/R/createFormula.r |only
ezsim-0.5.3/ezsim/R/createParDef.r |only
ezsim-0.5.3/ezsim/R/createSimulationTable.ezsim.r |only
ezsim-0.5.3/ezsim/R/evalFunctionOnParameterDef.r |only
ezsim-0.5.3/ezsim/R/ezsim.r |only
ezsim-0.5.3/ezsim/R/generate.parameterDef.r |only
ezsim-0.5.3/ezsim/R/generic.r |only
ezsim-0.5.3/ezsim/R/getSelectionName.ezsim.r |only
ezsim-0.5.3/ezsim/R/getSelectionName.summary.ezsim.r |only
ezsim-0.5.3/ezsim/R/merge.ezsim.r |only
ezsim-0.5.3/ezsim/R/merge.parameterDef.r |only
ezsim-0.5.3/ezsim/R/plot.ezsim.r |only
ezsim-0.5.3/ezsim/R/plot.summary.ezsim.r |only
ezsim-0.5.3/ezsim/R/print.ezsim.r |only
ezsim-0.5.3/ezsim/R/print.parameterDef.r |only
ezsim-0.5.3/ezsim/R/print.parameters.r |only
ezsim-0.5.3/ezsim/R/print.summary.ezsim.r |only
ezsim-0.5.3/ezsim/R/run.ezsim.r |only
ezsim-0.5.3/ezsim/R/setBanker.parameterDef.r |only
ezsim-0.5.3/ezsim/R/setSelection.parameterDef.r |only
ezsim-0.5.3/ezsim/R/subset.ezsim.r |only
ezsim-0.5.3/ezsim/R/summary.ezsim.r |only
ezsim-0.5.3/ezsim/R/test.ezsim.r |only
ezsim-0.5.3/ezsim/inst/doc/vignette.Rnw | 69 ++---
ezsim-0.5.3/ezsim/inst/doc/vignette.pdf |binary
ezsim-0.5.3/ezsim/man/createFormula.Rd | 48 +++
ezsim-0.5.3/ezsim/man/createParDef.Rd | 70 ++++-
ezsim-0.5.3/ezsim/man/createSimulationTable.Rd |only
ezsim-0.5.3/ezsim/man/createSimulationTable.ezsim.Rd |only
ezsim-0.5.3/ezsim/man/evalFunctionOnParameterDef.Rd |only
ezsim-0.5.3/ezsim/man/ezsim.Rd | 188 +++++++++------
ezsim-0.5.3/ezsim/man/generate.Rd | 27 +-
ezsim-0.5.3/ezsim/man/generate.parameterDef.Rd | 47 ++-
ezsim-0.5.3/ezsim/man/getSelectionName.Rd |only
ezsim-0.5.3/ezsim/man/getSelectionName.ezsim.Rd |only
ezsim-0.5.3/ezsim/man/getSelectionName.summary.ezsim.Rd |only
ezsim-0.5.3/ezsim/man/merge.ezsim.Rd |only
ezsim-0.5.3/ezsim/man/merge.parameterDef.Rd |only
ezsim-0.5.3/ezsim/man/plot.ezsim.Rd | 194 ++++++++++------
ezsim-0.5.3/ezsim/man/plot.summary.ezsim.Rd | 85 ++++---
ezsim-0.5.3/ezsim/man/print.ezsim.Rd | 27 +-
ezsim-0.5.3/ezsim/man/print.parameterDef.Rd | 26 +-
ezsim-0.5.3/ezsim/man/print.parameters.Rd | 26 +-
ezsim-0.5.3/ezsim/man/print.summary.ezsim.Rd | 31 +-
ezsim-0.5.3/ezsim/man/run.Rd | 27 +-
ezsim-0.5.3/ezsim/man/run.ezsim.Rd | 47 ++-
ezsim-0.5.3/ezsim/man/setBanker.Rd |only
ezsim-0.5.3/ezsim/man/setBanker.parameterDef.Rd |only
ezsim-0.5.3/ezsim/man/setSelection.Rd |only
ezsim-0.5.3/ezsim/man/setSelection.parameterDef.Rd |only
ezsim-0.5.3/ezsim/man/subset.ezsim.Rd | 66 +++--
ezsim-0.5.3/ezsim/man/summary.ezsim.Rd | 82 ++++--
ezsim-0.5.3/ezsim/man/test.Rd | 27 +-
ezsim-0.5.3/ezsim/man/test.ezsim.Rd | 66 +++--
72 files changed, 859 insertions(+), 450 deletions(-)