Title: Functions for drawing ellipses and ellipse-like confidence
regions
Diff between ellipse versions 0.3-5 dated 2007-09-06 and 0.3-7 dated 2012-03-17
Description: This package contains various routines for drawing
ellipses and ellipse-like confidence regions, implementing the
plots described in Murdoch and Chow (1996), A graphical display
of large correlation matrices, The American Statistician 50,
178-180. There are also routines implementing the profile plots
described in Bates and Watts (1988), Nonlinear Regression
Analysis and its Applications.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch
DESCRIPTION | 39 ++++---
MD5 |only
R/ellipse.R | 4
R/ellipse.arima0.R | 12 +-
R/ellipse.default.R | 50 +++++-----
R/ellipse.glm.R | 22 ++--
R/ellipse.lm.R | 16 +--
R/ellipse.nls.R | 16 +--
R/ellipse.profile.R | 148 +++++++++++++++---------------
R/ellipse.profile.glm.R | 18 +--
R/ellipse.profile.nls.R | 12 +-
R/pairs.profile.R | 222 ++++++++++++++++++++++-----------------------
R/plotcorr.R | 204 ++++++++++++++++++++---------------------
README | 55 +++++------
man/ellipse.Rd | 156 +++++++++++++++----------------
man/ellipse.arima0.Rd | 102 ++++++++++----------
man/ellipse.glm.Rd | 134 +++++++++++++--------------
man/ellipse.lm.Rd | 102 ++++++++++----------
man/ellipse.nls.Rd | 108 ++++++++++-----------
man/ellipse.profile.Rd | 140 ++++++++++++++--------------
man/ellipse.profile.glm.Rd | 164 ++++++++++++++++-----------------
man/ellipse.profile.nls.Rd | 132 +++++++++++++-------------
man/pairs.profile.Rd | 148 +++++++++++++++---------------
man/plotcorr.Rd | 166 ++++++++++++++++-----------------
24 files changed, 1089 insertions(+), 1081 deletions(-)
Title: Agnotology
Diff between replicationDemos versions 0.97 dated 2012-02-29 and 1.00 dated 2012-03-17
More information about replicationDemos at CRAN
Description: A set of R-functions providing some demonstration of
inappropriate methods, and hence shed light on why some claims
made in the climate science literature are unconvincing. Hence,
these demonstrations serve as a study in 'agnotology' (the
study of how and why we do not know things). Most of the flaws
exposed are breaches of common practice within statistics, and
these demonstrations show why such breaches result in invalid
results.
Author: Rasmus E. Benestad
Maintainer: Rasmus E. Benestad
replicationDemos-0.97/replicationDemos/data/tab1.rda |only
replicationDemos-1.00/replicationDemos/DESCRIPTION | 24 -
replicationDemos-1.00/replicationDemos/MD5 | 25 -
replicationDemos-1.00/replicationDemos/NAMESPACE | 1
replicationDemos-1.00/replicationDemos/R/Douglas-et-al2007.R | 28 +-
replicationDemos-1.00/replicationDemos/R/FL91.R | 4
replicationDemos-1.00/replicationDemos/R/SSH2011.R | 149 +++++++----
replicationDemos-1.00/replicationDemos/R/Scafetta2011b.R | 36 +-
replicationDemos-1.00/replicationDemos/R/forskning.no.R |only
replicationDemos-1.00/replicationDemos/R/scafetta2011a.R | 20 +
replicationDemos-1.00/replicationDemos/R/test.SW2006.R | 16 -
replicationDemos-1.00/replicationDemos/data/fl1991.rda |binary
replicationDemos-1.00/replicationDemos/data/ssh2011.tab1.rda |only
replicationDemos-1.00/replicationDemos/man/curvefitting.Rd | 36 ++
replicationDemos-1.00/replicationDemos/man/data.Rd | 6
15 files changed, 232 insertions(+), 113 deletions(-)
Permanent link
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-4 dated 2012-03-16 and 0.2-5 dated 2012-03-17
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
binaries are provided on CRAN. Mac Intel OS X binaries are not
provided on CRAN, but can be installed from the CRAN Extras
repository with: setRepositories(ind=1:2);
install.packages('rgeos').
Author: Roger Bivand and Colin Rundel
Maintainer: Roger Bivand
ChangeLog | 9 +++++++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
inst/ChangeLog | 9 +++++++++
inst/SVN_VERSION | 2 +-
src/rgeos_R2geos.c | 6 +++---
src/symbols.rds |binary
7 files changed, 32 insertions(+), 14 deletions(-)
Title: Miscellaneous helper functions for B. Bischl.
Diff between BBmisc versions 1.0-58 dated 2012-01-05 and 1.0-77 dated 2012-03-17
Description: Miscellaneous helper functions for and from B. Bischl and
some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl
Maintainer: Bernd Bischl
ChangeLog |only
DESCRIPTION | 24 ++++----
MD5 | 111 ++++++++++++++++++++------------------
NAMESPACE | 2
R/catf.R | 3 +
R/checkArg.R | 15 ++++-
R/checkListElementClass.R | 4 +
R/chunk.R |only
R/coalesce.R | 59 ++++++++++----------
R/collapse.R | 3 +
R/convertInteger.R | 10 +++
R/directory.R | 6 ++
R/extractSubList.R | 4 +
R/factor.R | 5 +
R/insert.R | 5 +
R/isExpensiveExampleOk.R |only
R/isProperlyNamed.R | 4 +
R/is_error.R | 5 +
R/listToShortString.R | 2
R/makeProgressBar.R | 39 +++++++++++--
R/messagef.R | 3 +
R/namedList.R | 3 +
R/printToChar.R | 3 +
R/requirePackages.R | 48 +++++++++++-----
R/save2.R | 3 +
R/splitTime.R | 4 -
R/stopf.R | 33 +++++++----
R/suppressAll.R | 6 ++
R/warningf.R | 24 ++++----
inst/tests/test_checkArg.R | 7 ++
inst/tests/test_chunk.R |only
inst/tests/test_makeProgressBar.R | 2
inst/tests/test_requirePackages.R |only
man/cFactor.Rd | 6 ++
man/catf.Rd | 4 +
man/checkArg.Rd | 14 ++++
man/checkListElementClass.Rd | 4 +
man/chunk.Rd |only
man/coalesce.Rd | 6 ++
man/collapse.Rd | 4 +
man/convertInteger.Rd | 6 ++
man/convertIntegers.Rd | 6 ++
man/extractSubList.Rd | 5 +
man/insert.Rd | 6 ++
man/is.error.Rd | 6 ++
man/isDirectory.Rd | 4 +
man/isEmptyDirectory.Rd | 4 +
man/isExpensiveExampleOk.Rd |only
man/isProperlyNamed.Rd | 5 +
man/listToShortString.Rd | 3 +
man/makeProgressBar.Rd | 26 +++++++-
man/messagef.Rd | 4 +
man/namedList.Rd | 4 +
man/printToChar.Rd | 4 +
man/requirePackages.Rd | 27 +++++++--
man/save2.Rd | 4 +
man/splitTime.Rd | 3 +
man/stopf.Rd | 15 ++++-
man/suppressAll.Rd | 7 ++
man/warningf.Rd | 7 ++
60 files changed, 474 insertions(+), 147 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-06-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-20 0.2.4
2011-02-16 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-27 1.2
2011-07-23 1.1
2011-07-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-20 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-01 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-20 0.1-7
2010-06-10 0.1-3
2010-05-22 0.1-0
Title: Fractional Factorial designs with 2-level factors
Diff between FrF2 versions 1.3-1 dated 2012-03-04 and 1.4 dated 2012-03-17
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 10
MD5 | 12
R/FrF2.R | 38 ++-
R/blocksplitplot.aliases.shortrep.R |only
inst/NEWS | 12
man/utilities.blocksplitplot.aliases.shortrep.Rd |only
tests/FrF2test.Rout.save | 150 +++---------
tests/generators.summary.test.Rout.save | 279 +++--------------------
8 files changed, 141 insertions(+), 360 deletions(-)
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Diff between DoE.base versions 0.23-1 dated 2012-03-04 and 0.23-2 dated 2012-03-17
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Author: Ulrike Groemping, with contributions by Boyko Amarov
Maintainer: Ulrike Groemping
DESCRIPTION | 8 ++---
MD5 | 6 ++--
R/utilities.R | 81 +++++++++++++++++++++++++++++++++++++---------------------
inst/NEWS | 9 ++++++
4 files changed, 69 insertions(+), 35 deletions(-)
Title: Parallel Computing Toolset for Genome-Wide Association Studies
(GWAS)
Diff between SNPRelate versions 0.9.3 dated 2012-03-05 and 0.9.4 dated 2012-03-17
Description: A high-performance computing toolset for relatedness and
principal component analysis in GWAS
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 10 +-
MD5 | 18 ++--
R/main.r | 17 +++-
man/SNPRelate-package.Rd | 6 -
src/CoreDEF.h | 79 ++++++++++++++++++---
src/CoreGDSLink.h | 15 +++-
src/dType.h | 170 ++++++++++++++++++++++-------------------------
src/dVect.cpp | 19 ++---
src/dVect.h | 126 ++++++++++++++++++----------------
src/main.cpp | 8 --
10 files changed, 272 insertions(+), 196 deletions(-)
Title: CoreArray Genomic Data Structure (GDS) R Interface
Diff between gdsfmt versions 0.9.6 dated 2012-03-05 and 0.9.7 dated 2012-03-17
Description: R interface of CoreArray GDS is based on the CoreArray
project initiated and developed by Xiuwen Zheng from 2007.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 8
MD5 | 50 ++--
R/GDS.all.r | 87 ++++---
man/add.gdsn.Rd | 11
man/append.gdsn.Rd | 15 +
man/gdsfmt-package.Rd | 6
src/CoreDEF.h | 79 +++++-
src/CoreGDS.cpp | 348 +++++++++++++++--------------
src/Makevars | 2
src/Makevars.win | 2
src/dBase.cpp | 283 +++++++++++++++++-------
src/dBase.h | 586 +++++++++++++++++++++++++++++---------------------
src/dFile.cpp | 60 ++---
src/dFile.h | 140 ++++++-----
src/dParallel.cpp | 47 +---
src/dParallel.h | 110 ++++-----
src/dPlatform.cpp | 195 +++++++++++-----
src/dPlatform.h | 226 ++++++++++---------
src/dSeq.cpp | 112 +++++----
src/dSeq.h | 150 +++++++-----
src/dStream.cpp | 28 +-
src/dStream.h | 122 +++++-----
src/dStruct.cpp | 57 ++--
src/dStruct.h | 166 +++++++-------
src/dType.h | 174 +++++++-------
src/gdsfmt.cpp | 21 +
26 files changed, 1783 insertions(+), 1302 deletions(-)
Title: Medical image registration using the NiftyReg library
Diff between RNiftyReg versions 0.5.0 dated 2011-11-02 and 0.6.1 dated 2012-03-17
Description: This package provides an R interface to the NiftyReg image
registration tools
Author: Jon Clayden; based on original code by Marc Modat and Pankaj
Daga
Maintainer: Jon Clayden
RNiftyReg-0.5.0/RNiftyReg/src/_reg_affineTransformation.cpp |only
RNiftyReg-0.5.0/RNiftyReg/src/_reg_affineTransformation.h |only
RNiftyReg-0.6.1/RNiftyReg/DESCRIPTION | 14
RNiftyReg-0.6.1/RNiftyReg/MD5 | 55
RNiftyReg-0.6.1/RNiftyReg/NEWS | 23
RNiftyReg-0.6.1/RNiftyReg/R/niftyreg.R | 181
RNiftyReg-0.6.1/RNiftyReg/R/xform.R | 8
RNiftyReg-0.6.1/RNiftyReg/man/niftyreg.Rd | 52
RNiftyReg-0.6.1/RNiftyReg/man/niftyreg.linear.Rd |only
RNiftyReg-0.6.1/RNiftyReg/man/niftyreg.nonlinear.Rd |only
RNiftyReg-0.6.1/RNiftyReg/src/Makevars | 2
RNiftyReg-0.6.1/RNiftyReg/src/_reg_blockMatching.cpp | 352 -
RNiftyReg-0.6.1/RNiftyReg/src/_reg_blockMatching.h | 14
RNiftyReg-0.6.1/RNiftyReg/src/_reg_f3d.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_f3d.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_femTransformation.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_femTransformation.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_globalTransformation.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_globalTransformation.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_localTransformation.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_localTransformation.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_localTransformation_be.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_localTransformation_jac.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_maths.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_maths.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_mutualinformation.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_mutualinformation.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_resampling.cpp | 3446 ++++------
RNiftyReg-0.6.1/RNiftyReg/src/_reg_resampling.h | 42
RNiftyReg-0.6.1/RNiftyReg/src/_reg_ssd.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_ssd.h |only
RNiftyReg-0.6.1/RNiftyReg/src/_reg_tools.cpp | 2546 ++++---
RNiftyReg-0.6.1/RNiftyReg/src/_reg_tools.h | 38
RNiftyReg-0.6.1/RNiftyReg/src/nifti1_io.c | 4
RNiftyReg-0.6.1/RNiftyReg/src/niftyreg.cpp | 330
RNiftyReg-0.6.1/RNiftyReg/src/niftyreg.h | 15
RNiftyReg-0.6.1/RNiftyReg/src/print.cpp |only
RNiftyReg-0.6.1/RNiftyReg/src/print.h |only
RNiftyReg-0.6.1/RNiftyReg/src/substitutions.h |only
RNiftyReg-0.6.1/RNiftyReg/src/znzlib.c | 4
40 files changed, 3786 insertions(+), 3340 deletions(-)
Title: Deducer Plug-in Example
Diff between DeducerPlugInExample versions 0.1-2 dated 2011-11-02 and 0.2-0 dated 2012-03-17
More information about DeducerPlugInExample at CRAN
Description: A example GUI plug-in package to serve as a template.
Author: Ian Fellows
Maintainer: Ian Fellows
DESCRIPTION | 9 ++++-----
MD5 | 4 ++--
NAMESPACE | 11 +----------
3 files changed, 7 insertions(+), 17 deletions(-)
Permanent link
Title: Reliability and factor analysis plugin
Diff between DeducerPlugInScaling versions 0.0-7 dated 2011-05-26 and 0.1-0 dated 2012-03-17
More information about DeducerPlugInScaling at CRAN
Description: A Deducer plug-in for factor analysis, reliability
analysis and discriminant analysis, using psych, GPArotation
and mvnormtest packages.
Author: Alberto Mirisola, Ian Fellows and Helios De Rosario-Martinez
Maintainer: Alberto Mirisola
DESCRIPTION | 17 +
MD5 |only
NAMESPACE |only
R/DeducerPlugInScaling.R | 378 +++++++++++++++++++++++++++++++++++++-------
man/DeducerPlugInScaling.Rd | 2
5 files changed, 337 insertions(+), 60 deletions(-)
Permanent link