Title: Interpreting Regression Effects
Diff between yhat versions 1.0-3 dated 2009-12-10 and 1.0-4 dated 2012-03-27
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
Author: Kim Nimon
Maintainer: Kim Nimon
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
R/commonalityCoefficients.R | 10 +++++-----
R/effect.size.R | 12 ++++++------
R/regr.R | 2 +-
man/yhat-package.Rd | 4 ++--
7 files changed, 18 insertions(+), 18 deletions(-)
Title: Data exchange between R and LabKey Server
Diff between Rlabkey versions 2.1.116 dated 2012-01-02 and 2.1.117 dated 2012-03-27
Description: This package allows an R user to discover, query and
modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe
DESCRIPTION | 13 +++++++------
MD5 | 32 ++++++++++++++++----------------
NEWS | 7 +++++++
R/labkey.deleteRows.R | 34 +++++++++++++++++-----------------
R/labkey.executeSql.R | 8 ++++----
R/labkey.getFolders.R | 6 +++---
R/labkey.getQueryInfo.R | 12 ++++++------
R/labkey.getQueryLists.R | 10 +++++-----
R/labkey.getSchemas.R | 6 +++---
R/labkey.insertRows.R | 34 +++++++++++++++++-----------------
R/labkey.saveBatch.R | 8 ++++----
R/labkey.selectRows.R | 16 ++++++++--------
R/labkey.updateRows.R | 34 +++++++++++++++++-----------------
R/makeDF.R | 17 ++++++++++++++---
R/makeFilter.R | 15 +++++++++++----
inst/doc/RlabkeyExample.pdf |binary
man/makeFilter.Rd | 13 +++++++++----
17 files changed, 148 insertions(+), 117 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Diff between spcosa versions 0.2-3 dated 2010-10-09 and 0.3-0 dated 2012-03-27
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means.
Author: Dennis Walvoort [aut, cre, cph], Dick Brus [aut, cph], Jaap de
Gruijter [aut, cph]
Maintainer: Dennis Walvoort
spcosa-0.2-3/spcosa/NEWS |only
spcosa-0.2-3/spcosa/tests/runTestSuite.cmd |only
spcosa-0.3-0/spcosa/DESCRIPTION | 30 ++-
spcosa-0.3-0/spcosa/MD5 |only
spcosa-0.3-0/spcosa/NAMESPACE | 5
spcosa-0.3-0/spcosa/R/method_plot-CompactStratification-SamplingPattern.R | 3
spcosa-0.3-0/spcosa/R/method_plot-CompactStratification-SamplingPatternPriorPoints.R | 3
spcosa-0.3-0/spcosa/R/method_plot-CompactStratification-SamplingPatternRandomComposite.R | 3
spcosa-0.3-0/spcosa/R/method_plot-CompactStratification.R | 4
spcosa-0.3-0/spcosa/R/method_plot-SamplingPattern.R | 5
spcosa-0.3-0/spcosa/R/method_plot-SamplingPatternPriorPoints.R | 5
spcosa-0.3-0/spcosa/R/method_plot-SamplingPatternRandomComposite.R | 5
spcosa-0.3-0/spcosa/R/method_stratify-SpatialGrid.R |only
spcosa-0.3-0/spcosa/R/method_stratify-SpatialPixels.R | 24 +-
spcosa-0.3-0/spcosa/R/method_stratify-SpatialPolygons.R | 12 -
spcosa-0.3-0/spcosa/build |only
spcosa-0.3-0/spcosa/demo/farmsumComposite.R | 6
spcosa-0.3-0/spcosa/demo/farmsumSCS.R | 86 +++++-----
spcosa-0.3-0/spcosa/demo/farmsumStS.R | 5
spcosa-0.3-0/spcosa/demo/sphere1.R | 9 -
spcosa-0.3-0/spcosa/demo/sphere2.R | 9 -
spcosa-0.3-0/spcosa/inst/FAQ | 50 +++--
spcosa-0.3-0/spcosa/inst/NEWS.Rd |only
spcosa-0.3-0/spcosa/inst/doc/spcosa.pdf |binary
spcosa-0.3-0/spcosa/man/spcosa-package.Rd | 9 -
spcosa-0.3-0/spcosa/man/spsample-methods.Rd | 2
spcosa-0.3-0/spcosa/man/stratify-methods.Rd | 14 +
spcosa-0.3-0/spcosa/tests/unitTesting.html | 20 +-
spcosa-0.3-0/spcosa/tests/unitTests/runit_estimate.R | 7
spcosa-0.3-0/spcosa/tests/unitTests/runit_stratify.R | 19 --
spcosa-0.3-0/spcosa/tests/unitTests/runit_stratifyCollapsedSolution.R | 5
31 files changed, 198 insertions(+), 142 deletions(-)
Title: Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities
Diff between mosaic versions 0.3-13 dated 2012-02-06 and 0.4-1 dated 2012-03-27
Description: Data sets and utilities from Project MOSAIC
(mosaic-web.org) used to teach mathematics, statistics,
computation and modeling. Funded by the NSF, Project MOSAIC is
a community of educators working to tie together aspects of
quantitative work that students in science, technology,
engineering and mathematics will need in their professional
lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim
Maintainer: Randall Pruim
mosaic-0.3-13/mosaic/R/createFun.R |only
mosaic-0.3-13/mosaic/R/distPlot.R |only
mosaic-0.3-13/mosaic/R/functions.R |only
mosaic-0.3-13/mosaic/R/makeFunction.R |only
mosaic-0.3-13/mosaic/inst/doc/Form2Fun.pdf |only
mosaic-0.3-13/mosaic/inst/doc/index.html |only
mosaic-0.3-13/mosaic/man/createMathFun.Rd |only
mosaic-0.3-13/mosaic/man/createMosaicFunction.Rd |only
mosaic-0.3-13/mosaic/man/distPlot.Rd |only
mosaic-0.3-13/mosaic/man/linear-algebra.Rd |only
mosaic-0.3-13/mosaic/man/makeFunction.Rd |only
mosaic-0.3-13/mosaic/man/printfunction.Rd |only
mosaic-0.4-1/mosaic/DESCRIPTION | 32 -
mosaic-0.4-1/mosaic/MD5 | 243 ++++++-----
mosaic-0.4-1/mosaic/NAMESPACE | 35 +
mosaic-0.4-1/mosaic/R/CIsim.R | 6
mosaic-0.4-1/mosaic/R/Calculus.R | 458 +++++++--------------
mosaic-0.4-1/mosaic/R/adapt_seq.R | 2
mosaic-0.4-1/mosaic/R/aggregating.R | 310 ++++++++++----
mosaic-0.4-1/mosaic/R/as.xtabs.R |only
mosaic-0.4-1/mosaic/R/bargraph.R | 34 -
mosaic-0.4-1/mosaic/R/binom.test.R | 19
mosaic-0.4-1/mosaic/R/compareMean.R |only
mosaic-0.4-1/mosaic/R/compareProportion.R |only
mosaic-0.4-1/mosaic/R/confint.R | 82 ++-
mosaic-0.4-1/mosaic/R/cross.R | 1
mosaic-0.4-1/mosaic/R/datasets.R | 110 +++--
mosaic-0.4-1/mosaic/R/dfapply.R | 3
mosaic-0.4-1/mosaic/R/do.R | 14
mosaic-0.4-1/mosaic/R/dotPlot.R | 13
mosaic-0.4-1/mosaic/R/favstats.R | 96 +++-
mosaic-0.4-1/mosaic/R/fetchData.R | 184 ++++----
mosaic-0.4-1/mosaic/R/fetchGoogle.R |only
mosaic-0.4-1/mosaic/R/findZeros.R | 159 ++++---
mosaic-0.4-1/mosaic/R/integrateODE.R | 13
mosaic-0.4-1/mosaic/R/interval.R | 12
mosaic-0.4-1/mosaic/R/linear-algebra.R | 74 +--
mosaic-0.4-1/mosaic/R/logit.R | 1
mosaic-0.4-1/mosaic/R/makeFun.R |only
mosaic-0.4-1/mosaic/R/mosaic-package.R | 4
mosaic-0.4-1/mosaic/R/nlsModel.R | 7
mosaic-0.4-1/mosaic/R/numD.R |only
mosaic-0.4-1/mosaic/R/oddsRatio.R |only
mosaic-0.4-1/mosaic/R/parseFormula.R | 2
mosaic-0.4-1/mosaic/R/perctable.R | 1
mosaic-0.4-1/mosaic/R/plotCumfreq.R |only
mosaic-0.4-1/mosaic/R/plotDist.R |only
mosaic-0.4-1/mosaic/R/plotFun.R | 350 ++++++++++------
mosaic-0.4-1/mosaic/R/pqrdata.R | 10
mosaic-0.4-1/mosaic/R/prop.test.R | 1
mosaic-0.4-1/mosaic/R/rand.R | 2
mosaic-0.4-1/mosaic/R/read.file.R | 3
mosaic-0.4-1/mosaic/R/resample.R | 4
mosaic-0.4-1/mosaic/R/rfun.R | 60 ++
mosaic-0.4-1/mosaic/R/rgeo.R | 113 ++---
mosaic-0.4-1/mosaic/R/smoothers.R | 26 -
mosaic-0.4-1/mosaic/R/statTally.R | 111 +++--
mosaic-0.4-1/mosaic/R/symbolicD.R |only
mosaic-0.4-1/mosaic/R/tally.R |only
mosaic-0.4-1/mosaic/R/themes.R | 9
mosaic-0.4-1/mosaic/R/xchisq.test.R | 1
mosaic-0.4-1/mosaic/R/xpnorm.R | 1
mosaic-0.4-1/mosaic/data/Births78.rda |only
mosaic-0.4-1/mosaic/data/SwimRecords.rda |only
mosaic-0.4-1/mosaic/inst/NEWS.Rd |only
mosaic-0.4-1/mosaic/inst/doc/Calculus-src.pdf |only
mosaic-0.4-1/mosaic/inst/doc/Calculus.Rnw |only
mosaic-0.4-1/mosaic/inst/doc/Calculus.pdf |only
mosaic-0.4-1/mosaic/inst/doc/MustangPrice.csv |only
mosaic-0.4-1/mosaic/inst/doc/Resampling-src.pdf |only
mosaic-0.4-1/mosaic/inst/doc/Resampling.Rnw |only
mosaic-0.4-1/mosaic/inst/doc/Resampling.pdf |only
mosaic-0.4-1/mosaic/inst/doc/SleepCaffeine.csv |only
mosaic-0.4-1/mosaic/inst/tests/test-aggregating.R |only
mosaic-0.4-1/mosaic/inst/tests/test-calculus.R |only
mosaic-0.4-1/mosaic/inst/tests/test-favstats.R |only
mosaic-0.4-1/mosaic/inst/tests/test-makeFunction.R | 68 ++-
mosaic-0.4-1/mosaic/inst/tests/test-tabulation.R |only
mosaic-0.4-1/mosaic/man/Births78.Rd |only
mosaic-0.4-1/mosaic/man/CIsim.Rd | 8
mosaic-0.4-1/mosaic/man/CPS.Rd | 2
mosaic-0.4-1/mosaic/man/Calculus.Rd | 125 +++--
mosaic-0.4-1/mosaic/man/FunctionsFromData.Rd | 28 -
mosaic-0.4-1/mosaic/man/Gestation.Rd | 5
mosaic-0.4-1/mosaic/man/HELP.Rd | 10
mosaic-0.4-1/mosaic/man/HELPfull.Rd | 6
mosaic-0.4-1/mosaic/man/HELPmiss.Rd | 4
mosaic-0.4-1/mosaic/man/HELPrct.Rd | 2
mosaic-0.4-1/mosaic/man/SD.Rd | 4
mosaic-0.4-1/mosaic/man/SnowGR.Rd | 2
mosaic-0.4-1/mosaic/man/SwimRecords.Rd |only
mosaic-0.4-1/mosaic/man/Utilities.Rd | 3
mosaic-0.4-1/mosaic/man/Utilities2.Rd | 7
mosaic-0.4-1/mosaic/man/adapt_seq.Rd | 2
mosaic-0.4-1/mosaic/man/aggregating-methods.Rd | 39 -
mosaic-0.4-1/mosaic/man/as-xtabs.Rd |only
mosaic-0.4-1/mosaic/man/bargraph.Rd | 25 -
mosaic-0.4-1/mosaic/man/binom.test.Rd | 26 -
mosaic-0.4-1/mosaic/man/columns.Rd |only
mosaic-0.4-1/mosaic/man/compareMean.Rd |only
mosaic-0.4-1/mosaic/man/compareProportion.Rd |only
mosaic-0.4-1/mosaic/man/confint.Rd |only
mosaic-0.4-1/mosaic/man/cross.Rd | 3
mosaic-0.4-1/mosaic/man/deg2rad.Rd |only
mosaic-0.4-1/mosaic/man/dfapply.Rd | 5
mosaic-0.4-1/mosaic/man/do.Rd | 1
mosaic-0.4-1/mosaic/man/dotPlot.Rd | 16
mosaic-0.4-1/mosaic/man/evalFormula.Rd |only
mosaic-0.4-1/mosaic/man/evalSubFormula.Rd |only
mosaic-0.4-1/mosaic/man/favstats.Rd | 11
mosaic-0.4-1/mosaic/man/fetchData-internel.Rd |only
mosaic-0.4-1/mosaic/man/fetchData.Rd | 41 -
mosaic-0.4-1/mosaic/man/fetchGoogle.Rd |only
mosaic-0.4-1/mosaic/man/findZeros.Rd | 62 ++
mosaic-0.4-1/mosaic/man/googleMap.Rd |only
mosaic-0.4-1/mosaic/man/inferArgs.Rd | 4
mosaic-0.4-1/mosaic/man/integrateODE.Rd | 15
mosaic-0.4-1/mosaic/man/interval.Rd | 10
mosaic-0.4-1/mosaic/man/joinFrames.Rd |only
mosaic-0.4-1/mosaic/man/latlon2xyz.Rd |only
mosaic-0.4-1/mosaic/man/linear.algebra.Rd |only
mosaic-0.4-1/mosaic/man/logical2factor.Rd |only
mosaic-0.4-1/mosaic/man/logit.Rd | 3
mosaic-0.4-1/mosaic/man/maggregate.Rd |only
mosaic-0.4-1/mosaic/man/makeColorscheme.Rd |only
mosaic-0.4-1/mosaic/man/makeFun.Rd | 50 +-
mosaic-0.4-1/mosaic/man/model.vars.Rd |only
mosaic-0.4-1/mosaic/man/mosaic-internal.Rd | 9
mosaic-0.4-1/mosaic/man/mosaic-package.Rd | 9
mosaic-0.4-1/mosaic/man/nlsModel.Rd | 9
mosaic-0.4-1/mosaic/man/numD.Rd |only
mosaic-0.4-1/mosaic/man/oddsRatio.Rd |only
mosaic-0.4-1/mosaic/man/panel.levelcontourplot.Rd | 11
mosaic-0.4-1/mosaic/man/panel.plotFun.Rd | 34 -
mosaic-0.4-1/mosaic/man/parseFormula.Rd | 2
mosaic-0.4-1/mosaic/man/perctable.Rd | 3
mosaic-0.4-1/mosaic/man/plotCumfreq.Rd |only
mosaic-0.4-1/mosaic/man/plotDist.Rd |only
mosaic-0.4-1/mosaic/man/plotFun.Rd | 72 ++-
mosaic-0.4-1/mosaic/man/pqrdata.Rd | 24 -
mosaic-0.4-1/mosaic/man/prop.Rd |only
mosaic-0.4-1/mosaic/man/prop.test.Rd | 3
mosaic-0.4-1/mosaic/man/rand.Rd | 4
mosaic-0.4-1/mosaic/man/read.file.Rd | 7
mosaic-0.4-1/mosaic/man/resample.Rd | 2
mosaic-0.4-1/mosaic/man/rfun.Rd | 35 -
mosaic-0.4-1/mosaic/man/rgeo.Rd | 82 ---
mosaic-0.4-1/mosaic/man/statTally.Rd | 46 +-
mosaic-0.4-1/mosaic/man/symbolicD.Rd |only
mosaic-0.4-1/mosaic/man/tally.Rd |only
mosaic-0.4-1/mosaic/man/themes.Rd | 14
mosaic-0.4-1/mosaic/man/xchisq.test.Rd | 3
mosaic-0.4-1/mosaic/man/xpnorm.Rd | 3
mosaic-0.4-1/mosaic/mosaic-manual.pdf |binary
mosaic-0.4-1/mosaic/mosaic.Rproj | 3
155 files changed, 2002 insertions(+), 1566 deletions(-)
Title: Latin Hypercube Samples
Diff between lhs versions 0.5 dated 2009-01-26 and 0.7 dated 2012-03-27
Description: This package provides a number of methods for creating and
augmenting Latin Hypercube Samples
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell
lhs-0.5/lhs/RUnit |only
lhs-0.5/lhs/inst/doc/Rplots.pdf |only
lhs-0.5/lhs/inst/doc/augmentLHS_Example.Stex |only
lhs-0.5/lhs/srcDos |only
lhs-0.5/lhs/vignettes/Rplots.ps |only
lhs-0.5/lhs/vignettes/Sweave.sty |only
lhs-0.5/lhs/vignettes/Sweave_Command.r |only
lhs-0.5/lhs/vignettes/Sweave_Command.r.Rout |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-003.eps |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-003.pdf |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-005.eps |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-005.pdf |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-007.eps |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-007.pdf |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-008.eps |only
lhs-0.5/lhs/vignettes/augmentLHS_Example-008.pdf |only
lhs-0.5/lhs/vignettes/augmentLHS_Example.Stex |only
lhs-0.5/lhs/vignettes/augmentLHS_Example.aux |only
lhs-0.5/lhs/vignettes/augmentLHS_Example.log |only
lhs-0.5/lhs/vignettes/augmentLHS_Example.pdf |only
lhs-0.5/lhs/vignettes/augmentLHS_Example.tex |only
lhs-0.5/lhs/vignettes/make_augmentLHS_Example.bat |only
lhs-0.5/lhs/vignettes/original |only
lhs-0.5/lhs/vignettes/results |only
lhs-0.7/lhs/ChangeLog | 9
lhs-0.7/lhs/DESCRIPTION | 26 -
lhs-0.7/lhs/MD5 |only
lhs-0.7/lhs/R/randomLHS.r | 26 -
lhs-0.7/lhs/inst/doc/augmentLHS_Example.Rtex |only
lhs-0.7/lhs/inst/doc/augmentLHS_Example.pdf |binary
lhs-0.7/lhs/man/randomLHS.Rd | 20 +
lhs-0.7/lhs/src/defines.h |only
lhs-0.7/lhs/src/improvedLHS_R.c | 348 +++++++++-----------
lhs-0.7/lhs/src/maximinLHS_R.c | 329 ++++++++-----------
lhs-0.7/lhs/src/optSeededLHS_R.c | 333 ++++++++-----------
lhs-0.7/lhs/src/optimumLHS_R.c | 372 ++++++++--------------
lhs-0.7/lhs/src/utilityLHS_R.cpp |only
lhs-0.7/lhs/vignettes/augmentLHS_Example.Rtex |only
38 files changed, 666 insertions(+), 797 deletions(-)
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 0.99-9.51 dated 2012-01-24 and 1.0 dated 2012-03-27
Description: A collection of algorithms related to modeling of soil
resources, soil classification, soil profile aggregation, and
visualization.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
aqp-0.99-9.51/aqp/R/format_slices.R |only
aqp-0.99-9.51/aqp/R/plot_slices.R |only
aqp-0.99-9.51/aqp/inst/doc |only
aqp-0.99-9.51/aqp/man/format_slices.Rd |only
aqp-0.99-9.51/aqp/man/make.segments.Rd |only
aqp-0.99-9.51/aqp/man/plot_slices.Rd |only
aqp-0.99-9.51/aqp/man/prepanel.depth_function.Rd |only
aqp-0.99-9.51/aqp/vignettes/aqp-intro.Rnw |only
aqp-1.0/aqp/DESCRIPTION | 10 -
aqp-1.0/aqp/MD5 | 99 ++++------
aqp-1.0/aqp/NEWS | 27 ++
aqp-1.0/aqp/R/SoilProfileCollection-coercion.R | 4
aqp-1.0/aqp/R/SoilProfileCollection-methods.R | 69 ++++---
aqp-1.0/aqp/R/SoilProfileCollection-slice-methods.R | 16 -
aqp-1.0/aqp/R/SoilProfileCollection-spatial.R | 21 +-
aqp-1.0/aqp/R/generalize.hz.R |only
aqp-1.0/aqp/R/make.segments.R | 96 +++++-----
aqp-1.0/aqp/R/munsell2rgb.R | 2
aqp-1.0/aqp/R/panel.depth_function.R | 8
aqp-1.0/aqp/R/profile_compare.R | 186 ++++++++++++++++----
aqp-1.0/aqp/R/setters.R | 90 ++++++---
aqp-1.0/aqp/R/soil_slotting.R | 27 +-
aqp-1.0/aqp/R/unroll.R | 118 ++++++------
aqp-1.0/aqp/R/zzz.R | 2
aqp-1.0/aqp/TODO | 5
aqp-1.0/aqp/data/ca630.rda |binary
aqp-1.0/aqp/data/munsell.rda |binary
aqp-1.0/aqp/data/rruff.sample.rda |binary
aqp-1.0/aqp/data/sp1.rda |binary
aqp-1.0/aqp/data/sp2.rda |binary
aqp-1.0/aqp/data/sp3.rda |binary
aqp-1.0/aqp/data/sp4.rda |binary
aqp-1.0/aqp/data/sp5.rda |binary
aqp-1.0/aqp/inst/CITATION | 34 +--
aqp-1.0/aqp/man/SPC-slab-methods.Rd | 5
aqp-1.0/aqp/man/SPC-slice-methods.Rd | 4
aqp-1.0/aqp/man/SPC-spatial-methods.Rd | 5
aqp-1.0/aqp/man/SPC-utils.Rd | 8
aqp-1.0/aqp/man/SoilProfileCollection-class.Rd | 7
aqp-1.0/aqp/man/aqp-package.Rd | 8
aqp-1.0/aqp/man/f.noise.Rd | 6
aqp-1.0/aqp/man/generalize.hz.Rd |only
aqp-1.0/aqp/man/munsell2rgb.Rd | 9
aqp-1.0/aqp/man/panel.depth_function.Rd | 4
aqp-1.0/aqp/man/plot_distance_graph.Rd | 2
aqp-1.0/aqp/man/profileApply-methods.Rd | 72 +++++++
aqp-1.0/aqp/man/profile_compare-methods.Rd | 43 +++-
aqp-1.0/aqp/man/resample.twotheta.Rd | 4
aqp-1.0/aqp/man/rruff.sample.Rd | 4
aqp-1.0/aqp/man/soil.slot.Rd | 13 -
aqp-1.0/aqp/man/sp1.Rd | 6
aqp-1.0/aqp/man/sp2.Rd | 7
aqp-1.0/aqp/man/sp3.Rd | 13 -
aqp-1.0/aqp/man/test_hz_logic.Rd | 6
aqp-1.0/aqp/man/unroll.Rd | 6
55 files changed, 651 insertions(+), 395 deletions(-)
Title: Time Frame coding kernel
Diff between tframe versions 2011.11-2 dated 2011-11-28 and 2012.3-1 dated 2012-03-27
Description: The tframe package provides a kernel of functions for
programming time series methods in a way that is relatively
independently of the representation of time. It also provides
plotting, time windowing, and some other utility functions
which are specifically intended for time series. See the Guide
distributed as a vignette, or ?tframe.Intro for more details.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 19 ++++++++++---------
MD5 | 6 +++---
NEWS | 8 +++++++-
R/tframe.R | 5 +++--
4 files changed, 23 insertions(+), 15 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 0.9-97 dated 2012-03-10 and 0.9-98 dated 2012-03-27
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma
Maintainer: Edzer Pebesma
sp-0.9-97/sp/inst/doc/sp.Rnw |only
sp-0.9-97/sp/inst/doc/sp.pdf |only
sp-0.9-98/sp/DESCRIPTION | 8 ++--
sp-0.9-98/sp/MD5 | 16 ++++-----
sp-0.9-98/sp/R/SpatialGrid-methods.R | 2 +
sp-0.9-98/sp/R/spplot.R | 61 +++++++++++++++++++----------------
sp-0.9-98/sp/demo/depend.R | 6 ++-
sp-0.9-98/sp/inst/doc/intro_sp.Rnw |only
sp-0.9-98/sp/inst/doc/intro_sp.pdf |only
sp-0.9-98/sp/inst/doc/over.Rnw | 20 ++++++-----
sp-0.9-98/sp/inst/doc/over.pdf |binary
11 files changed, 65 insertions(+), 48 deletions(-)
Title: Accurate Numerical Derivatives
Diff between numDeriv versions 2010.11-1 dated 2011-01-20 and 2012.3-1 dated 2012-03-27
Description: This package provide methods for calculating (usually)
accurate numerical first and second order derivatives. Accurate
calculations are done using Richardson's extrapolation, but a
simple difference method is also provided. Simple difference is
(usually) less accurate but is much quicker and provides a
useful cross-check. Methods are provided for real scalar and
vector valued functions.
Author: Paul Gilbert
Maintainer: Paul Gilbert and Ravi Varadhan
DESCRIPTION | 25 ++++++++++++++-----------
LICENSE | 11 ++++++++++-
MD5 |only
NEWS | 13 +++++++++++++
inst/doc/Guide.pdf |binary
man/genD.Rd | 4 ++--
man/numDeriv-package.Rd | 2 --
vignettes |only
8 files changed, 39 insertions(+), 16 deletions(-)
Title: GPA Factor Rotation
Diff between GPArotation versions 2010.07-1 dated 2011-01-20 and 2012.3-1 dated 2012-03-27
Description: Gradient Projection Algorithm Rotation for Factor
Analysis. See ?GPArotation.Intro for more details.
Author: Coen Bernaards and Robert Jennrich
Maintainer: Paul Gilbert and Coen Bernaards
GPArotation-2010.07-1/GPArotation/data/Harman.R |only
GPArotation-2010.07-1/GPArotation/data/Thurstone.R |only
GPArotation-2010.07-1/GPArotation/data/WansbeekMeijer.R |only
GPArotation-2012.3-1/GPArotation/DESCRIPTION | 12 +--
GPArotation-2012.3-1/GPArotation/MD5 |only
GPArotation-2012.3-1/GPArotation/NAMESPACE | 2
GPArotation-2012.3-1/GPArotation/NEWS | 16 ++++
GPArotation-2012.3-1/GPArotation/R/GPArotation.R | 44 ++++++++++--
GPArotation-2012.3-1/GPArotation/data/Harman.rda |only
GPArotation-2012.3-1/GPArotation/data/Thurstone.rda |only
GPArotation-2012.3-1/GPArotation/data/WansbeekMeijer.rda |only
GPArotation-2012.3-1/GPArotation/inst/doc/Guide.pdf |binary
GPArotation-2012.3-1/GPArotation/man/GPArotation-package.Rd | 1
GPArotation-2012.3-1/GPArotation/man/rotations.Rd | 17 ++++
GPArotation-2012.3-1/GPArotation/tests/Jennrich2002.R |only
GPArotation-2012.3-1/GPArotation/vignettes |only
16 files changed, 77 insertions(+), 15 deletions(-)
Title: Data for "GAMs: An Introduction with R"
Diff between gamair versions 0.0-7 dated 2011-03-24 and 0.0-8 dated 2012-03-27
Description: Data sets and scripts used in the book "Generalized
Additive Models: An Introduction with R", Wood (2006) CRC.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
data/bird.rda |binary
data/blowfly.rda |binary
data/brain.rda |binary
data/cairo.rda |binary
data/chicago.rda |binary
data/chl.rda |binary
data/co2s.rda |binary
data/coast.rda |binary
data/engine.rda |binary
data/harrier.rda |binary
data/hubble.rda |binary
data/ipo.rda |binary
data/mack.rda |binary
data/mackp.rda |binary
data/sole.rda |binary
data/sperm.comp1.rda |binary
data/sperm.comp2.rda |binary
data/stomata.rda |binary
data/wine.rda |binary
22 files changed, 4 insertions(+), 4 deletions(-)
Title: Fisheries Methods and Models in R
Diff between fishmethods versions 1.2-0 dated 2011-04-24 and 1.3-0 dated 2012-03-27
Description: Fishery methods and models from Quinn and Deriso (1999),
Haddon(2001) , and literature.
Author: Gary A. Nelson
Maintainer: Gary A. Nelson
fishmethods-1.2-0/fishmethods/INDEX |only
fishmethods-1.3-0/fishmethods/DESCRIPTION | 10 +++++-----
fishmethods-1.3-0/fishmethods/MD5 |only
fishmethods-1.3-0/fishmethods/R/alk.R |only
fishmethods-1.3-0/fishmethods/R/alkD.R | 4 +++-
fishmethods-1.3-0/fishmethods/R/alkprop.R | 22 ++++++++++++----------
fishmethods-1.3-0/fishmethods/R/alkss.R | 11 ++++-------
fishmethods-1.3-0/fishmethods/R/growtrans.R |only
fishmethods-1.3-0/fishmethods/R/irm_cr.R | 4 ++--
fishmethods-1.3-0/fishmethods/R/irm_h.R | 2 +-
fishmethods-1.3-0/fishmethods/man/M.empirical.Rd | 2 +-
fishmethods-1.3-0/fishmethods/man/alk.Rd |only
fishmethods-1.3-0/fishmethods/man/epr.Rd | 2 +-
fishmethods-1.3-0/fishmethods/man/growtrans.Rd |only
fishmethods-1.3-0/fishmethods/man/irm_cr.Rd | 6 +++---
fishmethods-1.3-0/fishmethods/man/irm_h.Rd | 4 ++--
fishmethods-1.3-0/fishmethods/man/vblrt.Rd | 2 +-
17 files changed, 35 insertions(+), 34 deletions(-)
Title: Manage and manipulate large collections of R objects stored as
tape-like files
Diff between rtape versions 1.0 dated 2011-05-11 and 1.2 dated 2012-03-27
Description: Storing huge data in RData format causes problems because
of the nessesity to load the whole file to the memory in order
to access and manipulate objects inside such file; rtape is a
simple solution to this problem. The package contains serveral
wrappers of R built-in serialize/unserialize mechanism allowing
user to quickly append objects to a tape-like file and later
iterate over them requiring only one copy of each stored object
to reside in memory a time.
Author: Miron B. Kursa
Maintainer: Miron B. Kursa
rtape-1.0/rtape/man/rtape_apply.Rd |only
rtape-1.2/rtape/DESCRIPTION | 9 ++++++---
rtape-1.2/rtape/MD5 |only
rtape-1.2/rtape/R/guessFileFormat.R | 2 +-
rtape-1.2/rtape/R/rtapeAdd.R | 19 +++++++++++++++++--
rtape-1.2/rtape/inst |only
rtape-1.2/rtape/man/guessFileFormat.Rd | 2 +-
rtape-1.2/rtape/man/rtape-sub-apply.Rd |only
rtape-1.2/rtape/man/rtapeAdd.Rd | 8 +++++---
9 files changed, 30 insertions(+), 10 deletions(-)
Title: Reading, manipulation and writing BAM (Binary alignment) files.
Diff between rbamtools versions 2.0 dated 2012-03-06 and 2.0.1 dated 2012-03-27
Description: This package provides an interface to functions of the
'SAMtools' C-Library by Heng Li.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers
rbamtools-2.0.1/rbamtools/DESCRIPTION | 6 +--
rbamtools-2.0.1/rbamtools/MD5 | 37 ++++++++++-----------
rbamtools-2.0.1/rbamtools/NAMESPACE | 1
rbamtools-2.0.1/rbamtools/R/rbamtools.r | 2 +
rbamtools-2.0.1/rbamtools/man/bamAlign-class.Rd | 6 ++-
rbamtools-2.0.1/rbamtools/man/cigarData-methods.Rd | 5 +-
rbamtools-2.0.1/rbamtools/man/cigarSize-methods.Rd |only
rbamtools-2.0.1/rbamtools/man/cigarSize.Rd |only
rbamtools-2.0.1/rbamtools/man/getVal.Rd | 14 +------
rbamtools-2.0.1/rbamtools/man/setVal.Rd | 14 +------
rbamtools-2.0.1/rbamtools/src/Makevars | 2 -
rbamtools-2.0.1/rbamtools/src/Makevars.win |only
rbamtools-2.0.1/rbamtools/src/rbamtools.c | 15 ++++++++
rbamtools-2.0.1/rbamtools/src/rbamtools.h | 3 +
rbamtools-2.0.1/rbamtools/src/samtools/bam_aux.c | 14 ++++---
rbamtools-2.0.1/rbamtools/src/samtools/bam_index.c | 6 +--
rbamtools-2.0.1/rbamtools/src/samtools/bgzf.h | 6 +--
rbamtools-2.0.1/rbamtools/src/samtools/faidx.c | 6 +--
rbamtools-2.0.1/rbamtools/src/samtools/ksort.h | 2 -
rbamtools-2.0.1/rbamtools/src/samtools/razf.h | 6 +--
rbamtools-2.0/rbamtools/src/samtools/knetfile.c |only
rbamtools-2.0/rbamtools/src/samtools/knetfile.h |only
22 files changed, 76 insertions(+), 69 deletions(-)
Title: Regularized Categorial Effects/Categorial Effect Modifiers in
GLMs
Diff between gvcm.cat versions 1.0 dated 2012-03-22 and 1.1 dated 2012-03-27
Description: The function fits generalized linear models with
categorial effects and categorial effect modifiers. The model
is specified by giving a symbolic description of the linear
predictor and a description of the error distribution.
Estimation employs regularization and model selection
strategies to fuse and/or select a covariate's categories.
These strategies are either a penalty combining the fused and
the pure Lasso or a forward selection strategy employing
AIC/BIC.
Author: Margret-Ruth Oelker
Maintainer: Margret-Ruth Oelker
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
inst/CITATION | 2 +-
3 files changed, 7 insertions(+), 7 deletions(-)
Title: Set (Normal) Random Number Generator and Seed
Diff between setRNG versions 2009.11-1 dated 2009-11-27 and 2011.11-2 dated 2012-03-27
Description: SetRNG provides utilities to help set and record the
setting of the seed and the uniform and normal generators used
when a random experiment is run. The utilities can be used in
other functions that do random experiments to simplify
recording and/or setting all the necessary information for
reproducibility. See the vignette and reference manual for
examples.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 17 ++++++++---------
LICENSE | 2 +-
MD5 |only
NEWS | 4 ++++
inst/doc/setRNG.pdf |binary
vignettes |only
6 files changed, 13 insertions(+), 10 deletions(-)
Title: Logic Regression
Diff between LogicReg versions 1.4.14 dated 2012-02-20 and 1.5.1 dated 2012-03-27
Description: Routines for Logic Regression
Author: Charles Kooperberg
Maintainer: Charles Kooperberg
DESCRIPTION | 8 -
MD5 | 14 +-
R/LogicReg.R | 78 +++++++++------
man/logreg.Rd | 7 -
man/logreg.mc.control.Rd | 2
man/plot.logreg.Rd | 2
src/slogic.f | 244 ++++++++++++++++++++++++++---------------------
src/swrite.c | 2
8 files changed, 205 insertions(+), 152 deletions(-)
Title: Grassmann Manifold Optimization
Diff between GrassmannOptim versions 1.0 dated 2009-12-13 and 1.1 dated 2012-03-27
More information about GrassmannOptim at CRAN
Description: Optimizing a function F(U), where U is a semi-orthogonal
matrix and F is invariant under an orthogonal transformation of
U
Author: Kofi Placid Adragni and Seongho Wu
Maintainer: Kofi Placid Adragni
GrassmannOptim-1.0/GrassmannOptim/R/OrthoNorm.R |only
GrassmannOptim-1.0/GrassmannOptim/R/Trace.R |only
GrassmannOptim-1.0/GrassmannOptim/man/OrthoNorm.Rd |only
GrassmannOptim-1.0/GrassmannOptim/man/Trace.Rd |only
GrassmannOptim-1.1/GrassmannOptim/DESCRIPTION | 11 +--
GrassmannOptim-1.1/GrassmannOptim/MD5 |only
GrassmannOptim-1.1/GrassmannOptim/NAMESPACE |only
GrassmannOptim-1.1/GrassmannOptim/R/GrassmannOptim.R | 49 ++++++++++++----
GrassmannOptim-1.1/GrassmannOptim/man/GrassmannOptim.Rd | 47 +++++++++------
9 files changed, 73 insertions(+), 34 deletions(-)
Permanent link
Title: Data Sets and Functions, for demonstrations with expression
arrays and gene sequences
Diff between DAAGbio versions 0.6 dated 2011-04-09 and 0.61 dated 2012-03-27
Description: Data sets and functions, for the display of biological
expression array (microarray) data, and for demonstrations with
such data
Author: John Maindonald
Maintainer: John Maindonald
DESCRIPTION | 15 ++++++++-------
MD5 |only
NAMESPACE |only
R/zzz.R | 13 +++++++------
inst/doc/marray-notes.pdf |binary
5 files changed, 15 insertions(+), 13 deletions(-)