Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 1.4.3 dated 2011-09-01 and 1.4.5 dated 2012-03-30
Description: The package implements the statistical theory of L-moments
in R including L-moment estimation, probability-weighted moment
estimation, parameter estimation for numerous familiar and
not-so-familiar distributions, and L-moment estimation for the
same distributions from the parameters. L-moments are derived
from the expectations of order statistics and are linear with
respect to the probability-weighted moments; choice of either
can be made by mathematical convenience. L-moments are directly
analogous to the well-known product moments; however, L-moments
have many advantages including unbiasedness, robustness, and
consistency with respect to the product moments. The method of
L-moments can out perform the method of maximum likelihood. The
lmomco package historically is oriented around canonical
FORTRAN algorithms of J.R.M. Hosking, and the nomenclature for
many of the functions parallels that of the Hosking library,
which later became available in the lmom package. However, vast
arrays of various extensions and curiosities are added by the
author to aid and expand the breadth of L-moment application.
Such extensions include venerable statistics as Sen weighted
mean, Gini mean difference, plotting positions, and conditional
probability adjustment. The plotting of L-moment ratio diagrams
is directly supported in this package. Computations of
L-moments for right-tail and left-tail censoring by known or
unknown censoring threshold and also by indicator variable also
are available. E.A.H. Elamir and A.H. Seheult have developed
the trimmed L-moments, which are implemented in this package,
and numerical integration of quantile functions is used to
dynamically compute trajectories of select TL-moment ratios for
the construction of TL-moment ratio diagrams. Robert Serfling
and Peng Xiao have extended L-moments into multivariate space;
the so-called sample L-comoments are implemented here and might
have considerable application in copula theory because they
measure asymmetric correlation and higher co-moments. The
supported distributions with moment type shown as "L"
(L-moments) or "TL" (trimmed L-moments) and additional support
for right-tail censoring ([RC]) include: Cauchy (TL),
Exponential (L), Gamma (L), Generalized Extreme Value (L),
Generalized Lambda (L & TL), Generalized Logistic (L),
Generalized Normal (L), Generalized Pareto (L[RC] & TL), Gumbel
(L), Kappa (L), Kumaraswamy (L), Laplace (L), Normal (L),
3-parameter log-Normal (L), Pearson Type III (L), Rayleigh (L),
Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated Exponential
(L), Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith
lmomco-1.4.3/lmomco/inst/doc/Introduction.Rd |only
lmomco-1.4.3/lmomco/inst/legacy/tlmrwei.R |only
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lmomco-1.4.5/lmomco/ChangeLog | 20
lmomco-1.4.5/lmomco/DESCRIPTION | 16
lmomco-1.4.5/lmomco/MD5 | 103 +--
lmomco-1.4.5/lmomco/NAMESPACE | 9
lmomco-1.4.5/lmomco/R/are.par.valid.R | 3
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lmomco-1.4.5/lmomco/R/par2lmom.R | 3
lmomco-1.4.5/lmomco/R/par2pdf.R | 3
lmomco-1.4.5/lmomco/R/par2qua.R | 3
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lmomco-1.4.5/lmomco/R/tlmrgpa.R | 2
lmomco-1.4.5/lmomco/R/vec2par.R | 8
lmomco-1.4.5/lmomco/inst/doc/references.txt | 692 ++++++++++++++++++++----
lmomco-1.4.5/lmomco/man/DrillBitLifetime.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta01515000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta02366500peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta05405000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta06766000dvs.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta08151500peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta08167000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta08190000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta09442000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/USGSsta14321000peaks.Rd | 4
lmomco-1.4.5/lmomco/man/amarilloprecip.Rd | 4
lmomco-1.4.5/lmomco/man/are.par.valid.Rd | 6
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lmomco-1.4.5/lmomco/man/cdfnor.Rd | 4
lmomco-1.4.5/lmomco/man/claudeprecip.Rd | 4
lmomco-1.4.5/lmomco/man/dist.list.Rd | 2
lmomco-1.4.5/lmomco/man/herefordprecip.Rd | 4
lmomco-1.4.5/lmomco/man/is.lap.Rd |only
lmomco-1.4.5/lmomco/man/lmomlap.Rd |only
lmomco-1.4.5/lmomco/man/par2lmom.Rd | 2
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lmomco-1.4.5/lmomco/man/plotlmrdia.Rd | 4
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lmomco-1.4.5/lmomco/man/theoTLmoms.Rd | 20
lmomco-1.4.5/lmomco/man/tlmrglo.Rd | 2
lmomco-1.4.5/lmomco/man/tlmrgpa.Rd | 4
lmomco-1.4.5/lmomco/man/tlmrpe3.Rd | 4
lmomco-1.4.5/lmomco/man/tulia6Eprecip.Rd | 4
lmomco-1.4.5/lmomco/man/tuliaprecip.Rd | 4
lmomco-1.4.5/lmomco/man/vec2par.Rd | 2
lmomco-1.4.5/lmomco/man/vegaprecip.Rd | 4
61 files changed, 780 insertions(+), 233 deletions(-)
Title: Multivariate nonparametric methods based on spatial signs and
ranks
Diff between SpatialNP versions 1.0-1 dated 2009-10-16 and 1.1-0 dated 2012-03-30
Description: This package contains test and estimates of location,
tests of independence, tests of sphericity and several
estimates of shape all based on spatial signs, symmetrized
signs, ranks and signed ranks.
Author: Seija Sirkia, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara
Taskinen
Maintainer: Jari Miettinen
DESCRIPTION | 16 +++---
MD5 |only
NAMESPACE | 17 ++++---
R/RCov.R | 14 ++---
R/SCov.R | 21 ++++----
R/SRCov.R | 19 ++++---
R/SSCov.R | 19 ++-----
R/ae.hl.estimate.R | 108 +++++++++++++++++++++-----------------------
R/ae.spatial.median.R |only
R/mvhuberM.R |only
R/rank.shape.R | 8 +--
R/signrank.shape.R | 70 ++++++++++++++++++++--------
R/signrankinternals.R | 114 +++++++++++++++++++++++++++++++++++++++++++----
R/signs.shape.R |only
R/spatial.location.R | 36 +++-----------
R/spatial.rank.R | 5 --
R/spatial.shape.R | 24 +++++----
R/spatial.signrank.R | 5 --
R/spatial.signs.R |only
R/spatial.symmsign.R | 12 ++--
R/sr.indep.test.R | 8 +--
R/sr.loc.test.R | 21 ++++----
R/sr.sphere.test.R | 9 +--
R/symmhuber.R |only
R/symmsign.shape.R |only
R/to.shape.R | 13 ++---
inst |only
man/Huber.Rd |only
man/SRCov.Rd | 9 ++-
man/SpatialNP-package.Rd | 13 ++---
man/independencetests.Rd | 10 ++--
man/locationtests.Rd | 14 +++--
man/shapematrices.Rd | 72 +++++++++++++++++------------
man/spatial.location.Rd | 41 +++++++++-------
man/spatialsignsranks.Rd | 22 +++++----
man/sphericitytests.Rd | 6 +-
src |only
37 files changed, 427 insertions(+), 299 deletions(-)
Title: R Transcription Factor Binding Site identification tool
Diff between rtfbs versions 0.1.0 dated 2011-07-23 and 0.2 dated 2012-03-30
Description: RTFBS identifies and scores possible Transcription Factor
Binding Sites and allows for FDR analysis and pruning. It
supports splitting of sequences based on size or a specified
GFF, grouping by GC content, and specification of Markov model
order. The heavy lifting is done in C while all results are
made available via R.
Author: Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam
Siepel
Maintainer: Melissa Hubisz
rtfbs-0.1.0/rtfbs/inst/doc/Sweave.sty |only
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rtfbs-0.2/rtfbs/R/tfbs.R | 776 +++++++++++------------
rtfbs-0.2/rtfbs/inst/doc/vignette.Rnw | 6
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rtfbs-0.2/rtfbs/src/Makevars.win | 2
rtfbs-0.2/rtfbs/src/bed.c | 4
rtfbs-0.2/rtfbs/src/dgamma.c | 2
rtfbs-0.2/rtfbs/src/fit_em.c | 10
rtfbs-0.2/rtfbs/src/fit_feature.c | 1
rtfbs-0.2/rtfbs/src/gff.c | 9
rtfbs-0.2/rtfbs/src/local_alignment.c | 11
rtfbs-0.2/rtfbs/src/markov_matrix.c | 8
rtfbs-0.2/rtfbs/src/numerical_opt.c | 12
rtfbs-0.2/rtfbs/src/phast_cons.c | 6
rtfbs-0.2/rtfbs/src/phylo_hmm.c | 1
rtfbs-0.2/rtfbs/src/phylo_p.c | 4
rtfbs-0.2/rtfbs/src/rph_gff.c | 1
rtfbs-0.2/rtfbs/src/rph_tfbs.c | 8
rtfbs-0.2/rtfbs/src/rph_trees.c | 5
rtfbs-0.2/rtfbs/src/subst_distrib.c | 4
rtfbs-0.2/rtfbs/src/subst_mods.c | 32
rtfbs-0.2/rtfbs/src/tfbs.c | 22
rtfbs-0.2/rtfbs/src/tree_model.c | 62 +
rtfbs-0.2/rtfbs/src/trees.c | 37 -
rtfbs-0.2/rtfbs/src/trees.h | 11
rtfbs-0.2/rtfbs/src/version | 2
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100 files changed, 659 insertions(+), 580 deletions(-)
Title: Siena - Simulation Investigation for Empirical Network Analysis
Diff between RSiena versions 1.0.12.201 dated 2012-02-10 and 1.1-212 dated 2012-03-30
Description: Fits models to longitudinal networks
Author: Various
Maintainer: RSiena developers
RSiena-1.0.12.201/RSiena/src/model/effects/CovariateDistance2AlterEffect.cpp |only
RSiena-1.0.12.201/RSiena/src/model/effects/CovariateDistance2AlterEffect.h |only
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RSiena-1.0.12.201/RSiena/src/model/effects/CovariateDistance2NetworkEffect.h |only
RSiena-1.0.12.201/RSiena/src/model/effects/CovariateDistance2SimilarityEffect.cpp |only
RSiena-1.0.12.201/RSiena/src/model/effects/CovariateDistance2SimilarityEffect.h |only
RSiena-1.1-212/RSiena/.Rinstignore |only
RSiena-1.1-212/RSiena/DESCRIPTION | 10
RSiena-1.1-212/RSiena/MD5 | 88 +++---
RSiena-1.1-212/RSiena/R/bayes.r | 10
RSiena-1.1-212/RSiena/R/effects.r | 68 ++--
RSiena-1.1-212/RSiena/R/effectsDocumentation.r | 4
RSiena-1.1-212/RSiena/R/initializeFRAN.r | 22 -
RSiena-1.1-212/RSiena/R/phase3.r | 4
RSiena-1.1-212/RSiena/R/robmon.r | 13
RSiena-1.1-212/RSiena/R/siena08.r | 4
RSiena-1.1-212/RSiena/R/sienaDataCreate.r | 4
RSiena-1.1-212/RSiena/R/sienaprint.r | 3
RSiena-1.1-212/RSiena/R/simstatsc.r | 2
RSiena-1.1-212/RSiena/R/zzz.R | 4
RSiena-1.1-212/RSiena/changeLog | 142 ++++++++++
RSiena-1.1-212/RSiena/data/allEffects.csv | 57 ++--
RSiena-1.1-212/RSiena/inst/doc/RSiena.bib |only
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RSiena-1.1-212/RSiena/man/RSiena-package.Rd | 4
RSiena-1.1-212/RSiena/po/R-RSiena.pot | 43 ++-
RSiena-1.1-212/RSiena/src/data/BehaviorLongitudinalData.cpp | 7
RSiena-1.1-212/RSiena/src/model/EpochSimulation.cpp | 15 -
RSiena-1.1-212/RSiena/src/model/Model.cpp | 26 +
RSiena-1.1-212/RSiena/src/model/effects/AllEffects.h | 2
RSiena-1.1-212/RSiena/src/model/effects/CovariateAndNetworkBehaviorEffect.cpp | 8
RSiena-1.1-212/RSiena/src/model/effects/InteractionCovariateEffect.cpp | 8
RSiena-1.1-212/RSiena/src/model/effects/SimilarityEffect.cpp | 42 ++
RSiena-1.1-212/RSiena/src/model/effects/generic/CovariateDistance2NetworkFunction.cpp | 10
RSiena-1.1-212/RSiena/src/model/ml/Chain.cpp | 4
RSiena-1.1-212/RSiena/src/model/ml/MLSimulation.cpp | 2
RSiena-1.1-212/RSiena/src/model/variables/DependentVariable.cpp | 20 -
RSiena-1.1-212/RSiena/src/model/variables/EffectValueTable.h | 2
RSiena-1.1-212/RSiena/src/model/variables/NetworkVariable.cpp | 30 --
RSiena-1.1-212/RSiena/src/siena07setup.cpp | 10
RSiena-1.1-212/RSiena/src/siena07utilities.cpp | 5
RSiena-1.1-212/RSiena/tests/parallel.Rout.save | 125 ++++----
RSiena-1.1-212/RSiena/tests/scriptfile.Rout.save | 59 ++--
RSiena-1.1-212/RSiena/tests/scripts.Rout.save | 46 ---
54 files changed, 599 insertions(+), 304 deletions(-)
Title: Nested Archimedean Copulas
Diff between nacopula versions 0.8-0 dated 2012-02-06 and 0.8-1 dated 2012-03-30
Description: An R package for working with nested Archimedean copulas.
Specifically, providing procedures for computing function
values and cube volumes, characteristics such as Kendall's tau
and tail dependence coefficients, efficient sampling
algorithms, various estimators, and goodness-of-fit tests. The
package also contains related univariate distributions and
special functions such as the Sibuya distribution, the
polylogarithm, Stirling and Eulerian numbers.
Author: Marius Hofert
Maintainer: Martin Maechler
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nacopula-0.8-0/nacopula/LICENCE |only
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nacopula-0.8-1/nacopula/DESCRIPTION | 20 ++---
nacopula-0.8-1/nacopula/MD5 | 108 -------------------------------
nacopula-0.8-1/nacopula/NAMESPACE | 76 ---------------------
nacopula-0.8-1/nacopula/R/aaa.R |only
26 files changed, 14 insertions(+), 190 deletions(-)
Title: Ordination and Multivariate Analysis for Ecology
Diff between labdsv versions 1.4-1 dated 2010-01-08 and 1.5-0 dated 2012-03-30
Description: A variety of ordination and community analyses useful in
analysis of datasets in community ecology. Includes many of
the common ordination methods, with graphical routines to
facilitate their interpretation, as well as several novel
analyses.
Author: David W. Roberts
Maintainer: David W. Roberts
labdsv-1.4-1/labdsv/R/zzz.R |only
labdsv-1.5-0/labdsv/DESCRIPTION | 12 ++---
labdsv-1.5-0/labdsv/MD5 |only
labdsv-1.5-0/labdsv/NAMESPACE |only
labdsv-1.5-0/labdsv/R/concov.R |only
labdsv-1.5-0/labdsv/R/const.R | 73 +++++++++++++++-----------------
labdsv-1.5-0/labdsv/R/homoteneity.R |only
labdsv-1.5-0/labdsv/R/importance.R | 74 ++++++++++++++++-----------------
labdsv-1.5-0/labdsv/R/pca.R | 32 +++-----------
labdsv-1.5-0/labdsv/R/pco.R | 24 ++++++++++
labdsv-1.5-0/labdsv/R/reconcile.R |only
labdsv-1.5-0/labdsv/R/rgl.pco.R |only
labdsv-1.5-0/labdsv/data/brycesite.rda |binary
labdsv-1.5-0/labdsv/data/bryceveg.rda |binary
labdsv-1.5-0/labdsv/inst/ChangeLog | 60 +++++++++++++++++++++++---
labdsv-1.5-0/labdsv/man/concov.Rd |only
labdsv-1.5-0/labdsv/man/const.Rd | 3 -
labdsv-1.5-0/labdsv/man/dropplt.Rd | 23 +++++-----
labdsv-1.5-0/labdsv/man/dropspc.Rd | 6 +-
labdsv-1.5-0/labdsv/man/dsvdis.Rd | 8 +--
labdsv-1.5-0/labdsv/man/homoteneity.Rd |only
labdsv-1.5-0/labdsv/man/importance.Rd | 23 ++++++----
labdsv-1.5-0/labdsv/man/indval.Rd | 2
labdsv-1.5-0/labdsv/man/isamic.Rd | 3 -
labdsv-1.5-0/labdsv/man/matrify.Rd | 4 -
labdsv-1.5-0/labdsv/man/orddist.Rd | 6 +-
labdsv-1.5-0/labdsv/man/ordtest.Rd | 2
labdsv-1.5-0/labdsv/man/pco.Rd | 2
labdsv-1.5-0/labdsv/man/plot.nmds.Rd | 30 ++++++++-----
labdsv-1.5-0/labdsv/man/plot.pca.Rd | 19 ++++----
labdsv-1.5-0/labdsv/man/plot.pco.Rd | 29 +++++++++---
labdsv-1.5-0/labdsv/man/reconcile.Rd |only
labdsv-1.5-0/labdsv/man/rndtaxa.Rd | 3 -
labdsv-1.5-0/labdsv/man/thull.Rd | 15 +++---
labdsv-1.5-0/labdsv/man/vegtab.Rd | 2
35 files changed, 270 insertions(+), 185 deletions(-)
Title: Regularized Categorial Effects/Categorial Effect Modifiers in
GLMs
Diff between gvcm.cat versions 1.1 dated 2012-03-27 and 1.2 dated 2012-03-30
Description: The function fits generalized linear models with
categorial effects and categorial effect modifiers. The model
is specified by giving a symbolic description of the linear
predictor and a description of the error distribution.
Estimation employs regularization and model selection
strategies to fuse and/or select a covariate's categories.
These strategies are either a penalty combining the fused and
the pure Lasso or a forward selection strategy employing
AIC/BIC.
Author: Margret-Ruth Oelker
Maintainer: Margret-Ruth Oelker
DESCRIPTION | 8 ++++----
MD5 | 24 ++++++++++++------------
R/a.coefs.R | 17 +++++++++++------
R/contr.effect.r | 3 +--
R/first.derivative.R | 2 +-
R/gvcm.cat.default.R | 2 +-
R/index.R | 3 ++-
R/optimierung.R | 11 ++++-------
R/p.R | 11 ++++++++---
R/predict.gvcm.cat.R | 2 +-
R/simulation.R | 2 +-
R/v.R | 4 +++-
man/gvcm.cat.Rd | 6 +++---
13 files changed, 52 insertions(+), 43 deletions(-)
Title: Start the detrendeR Graphical User Interface (GUI)
Diff between detrendeR versions 1.0.1 dated 2011-08-05 and 1.0.2 dated 2012-03-30
Description: Simple GUI
Author: Filipe Campelo
Maintainer: Filipe Campelo
detrendeR-1.0.1/detrendeR/R/interactiveDETRENDING1.r |only
detrendeR-1.0.2/detrendeR/DESCRIPTION | 8 +-
detrendeR-1.0.2/detrendeR/MD5 | 18 ++--
detrendeR-1.0.2/detrendeR/NAMESPACE | 2
detrendeR-1.0.2/detrendeR/R/DetrendeR.R | 71 +++++++++++++++----
detrendeR-1.0.2/detrendeR/R/arstan.R | 10 +-
detrendeR-1.0.2/detrendeR/R/interactiveDETRENDING.r |only
detrendeR-1.0.2/detrendeR/man/EPS.value.Rd | 16 +---
detrendeR-1.0.2/detrendeR/man/RwlInfo.Rd | 17 ++--
detrendeR-1.0.2/detrendeR/man/detrendeR-package.Rd | 4 -
detrendeR-1.0.2/detrendeR/man/detrender.Rd | 24 ------
11 files changed, 96 insertions(+), 74 deletions(-)
Title: Multivariate Dependence with Copulas
Diff between copula versions 0.9-9 dated 2011-12-02 and 0.99-0 dated 2012-03-30
Description: Classes (S4) of commonly used copulas including elliptical
(normal and t), Archimedean (Clayton, Gumbel, Frank, and
Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss,
Galambos, Tawn, and t-EV), and other families (Plackett and
Farlie-Gumbel-Morgenstern). Methods for density, distribution,
random number generation, bivariate dependence measures,
perspective and contour plots. Functions for fitting copula
models with variance estimate. Independence tests among random
variables and random vectors. Serial independence tests for
univariate and multivariate continuous time series.
Goodness-of-fit tests for copulas based on multipliers and on
the parametric bootstrap. Bivariate and multivariate tests of
extreme-value dependence. Bivariate tests of exchangeability.
Now with former 'nacopula' for working with nested Archimedean
copulas. Specifically, providing procedures for computing
function values and cube volumes, characteristics such as
Kendall's tau and tail dependence coefficients, efficient
sampling algorithms, various estimators, and goodness-of-fit
tests. The package also contains related univariate
distributions and special functions such as the Sibuya
distribution, the polylogarithm, Stirling and Eulerian numbers.
Author: Jun Yan
Maintainer: Martin Maechler
copula-0.9-9/copula/COPYING |only
copula-0.9-9/copula/R/mult.R |only
copula-0.9-9/copula/inst/ToDo |only
copula-0.9-9/copula/src/mult.c |only
copula-0.9-9/copula/src/mygsl.h |only
copula-0.9-9/copula/src/mygsl_util.c |only
copula-0.9-9/copula/src/stable.h |only
copula-0.99-0/copula/ChangeLog | 453 +++++++++++++++++++++++-----
copula-0.99-0/copula/DESCRIPTION | 56 ++-
copula-0.99-0/copula/LICENCE |only
copula-0.99-0/copula/MD5 | 260 +++++++++++-----
copula-0.99-0/copula/NAMESPACE | 100 +++++-
copula-0.99-0/copula/R/AllClass.R |only
copula-0.99-0/copula/R/Auxiliaries.R |only
copula-0.99-0/copula/R/Classes.R | 331 ++++++++------------
copula-0.99-0/copula/R/Copula.R | 86 ++---
copula-0.99-0/copula/R/E.R | 30 -
copula-0.99-0/copula/R/amhCopula.R | 69 +---
copula-0.99-0/copula/R/archmCopula.R | 48 +-
copula-0.99-0/copula/R/asymCopula.R | 44 +-
copula-0.99-0/copula/R/asymExplicitCopula.R | 38 --
copula-0.99-0/copula/R/aux-acopula.R |only
copula-0.99-0/copula/R/claytonCopula.R | 78 ++--
copula-0.99-0/copula/R/cop_objects.R |only
copula-0.99-0/copula/R/debye.R | 70 +---
copula-0.99-0/copula/R/derCdfPdf.R | 121 +++----
copula-0.99-0/copula/R/ellipCopula.R | 42 +-
copula-0.99-0/copula/R/estimation.R |only
copula-0.99-0/copula/R/evCopula.R | 120 +++----
copula-0.99-0/copula/R/evTests.R | 204 +++++-------
copula-0.99-0/copula/R/exchTests.R | 80 ++--
copula-0.99-0/copula/R/fgmCopula.R | 107 ++----
copula-0.99-0/copula/R/fitCopula.R | 322 +++++++++----------
copula-0.99-0/copula/R/fitMvdc.R | 95 ++---
copula-0.99-0/copula/R/frankCopula.R | 53 +--
copula-0.99-0/copula/R/galambosCopula.R | 71 +---
copula-0.99-0/copula/R/galambosExpr-math.R | 104 +++---
copula-0.99-0/copula/R/gof.R |only
copula-0.99-0/copula/R/gofEVTests.R | 114 +++----
copula-0.99-0/copula/R/gofTests.R | 218 +++++--------
copula-0.99-0/copula/R/graphics.R | 100 ++++--
copula-0.99-0/copula/R/gumbelCopula.R | 61 +--
copula-0.99-0/copula/R/huslerReissCopula.R | 60 +--
copula-0.99-0/copula/R/indepCopula.R | 52 +--
copula-0.99-0/copula/R/indepTests.R | 355 +++++++++------------
copula-0.99-0/copula/R/logseries.R | 40 --
copula-0.99-0/copula/R/mvdc.R | 32 -
copula-0.99-0/copula/R/nacopula.R |only
copula-0.99-0/copula/R/normalCopula.R | 78 ++--
copula-0.99-0/copula/R/plackettCopula.R | 51 +--
copula-0.99-0/copula/R/rstable1.R |only
copula-0.99-0/copula/R/safeUroot.R |only
copula-0.99-0/copula/R/schlatherCopula.R | 54 +--
copula-0.99-0/copula/R/special-func.R |only
copula-0.99-0/copula/R/stable.R | 39 +-
copula-0.99-0/copula/R/tCopula.R | 79 ++--
copula-0.99-0/copula/R/tawnCopula.R | 63 +--
copula-0.99-0/copula/R/tevCopula.R | 63 +--
copula-0.99-0/copula/R/timing.R |only
copula-0.99-0/copula/R/trafos.R |only
copula-0.99-0/copula/R/zzz.R | 37 +-
copula-0.99-0/copula/TODO |only
copula-0.99-0/copula/demo/00Index | 9
copula-0.99-0/copula/demo/GIG-demo.R |only
copula-0.99-0/copula/demo/G_ak.R |only
copula-0.99-0/copula/demo/QARClayton.R | 45 +-
copula-0.99-0/copula/demo/dDiag-plots.R |only
copula-0.99-0/copula/demo/estimation.gof.R |only
copula-0.99-0/copula/demo/gofCopula.R | 26 +
copula-0.99-0/copula/demo/logL-vis.R |only
copula-0.99-0/copula/demo/opC-demo.R |only
copula-0.99-0/copula/demo/polyGJ.R |only
copula-0.99-0/copula/demo/retstable.R |only
copula-0.99-0/copula/demo/timings.R |only
copula-0.99-0/copula/inst/CITATION | 21 +
copula-0.99-0/copula/inst/Rsource |only
copula-0.99-0/copula/inst/doc |only
copula-0.99-0/copula/inst/rData |only
copula-0.99-0/copula/man/Anfun.Rd | 38 +-
copula-0.99-0/copula/man/Bernoulli.Rd |only
copula-0.99-0/copula/man/Copula.Rd | 43 +-
copula-0.99-0/copula/man/K.Rd |only
copula-0.99-0/copula/man/Sibuya.Rd |only
copula-0.99-0/copula/man/Stirling.Rd |only
copula-0.99-0/copula/man/acopula-class.Rd |only
copula-0.99-0/copula/man/allComp.Rd |only
copula-0.99-0/copula/man/archmCopula.Rd | 24 +
copula-0.99-0/copula/man/assocMeasures.Rd | 41 +-
copula-0.99-0/copula/man/beta.Blomqvist.Rd |only
copula-0.99-0/copula/man/cacopula.Rd |only
copula-0.99-0/copula/man/copFamilies.Rd |only
copula-0.99-0/copula/man/copula-class.Rd | 71 ++--
copula-0.99-0/copula/man/dDiag.Rd |only
copula-0.99-0/copula/man/dnacopula.Rd |only
copula-0.99-0/copula/man/ellipCopula.Rd | 19 -
copula-0.99-0/copula/man/emde.Rd |only
copula-0.99-0/copula/man/emle.Rd |only
copula-0.99-0/copula/man/enacopula.Rd |only
copula-0.99-0/copula/man/estim-misc.Rd |only
copula-0.99-0/copula/man/evCopula.Rd | 3
copula-0.99-0/copula/man/evTestK.Rd | 27 -
copula-0.99-0/copula/man/fitCopula.Rd | 4
copula-0.99-0/copula/man/getAcop.Rd |only
copula-0.99-0/copula/man/gnacopula.Rd |only
copula-0.99-0/copula/man/gofCopula.Rd | 79 ++--
copula-0.99-0/copula/man/gtrafo.Rd |only
copula-0.99-0/copula/man/initOpt.Rd |only
copula-0.99-0/copula/man/interval-class.Rd |only
copula-0.99-0/copula/man/interval.Rd |only
copula-0.99-0/copula/man/math-fun.Rd |only
copula-0.99-0/copula/man/nacPairthetas.Rd |only
copula-0.99-0/copula/man/nacopula-class.Rd |only
copula-0.99-0/copula/man/nesdepth.Rd |only
copula-0.99-0/copula/man/onacopula.Rd |only
copula-0.99-0/copula/man/opower.Rd |only
copula-0.99-0/copula/man/pnacopula.Rd |only
copula-0.99-0/copula/man/pobs.Rd |only
copula-0.99-0/copula/man/polylog.Rd |only
copula-0.99-0/copula/man/polynEval.Rd |only
copula-0.99-0/copula/man/printNacopula.Rd |only
copula-0.99-0/copula/man/prob.Rd |only
copula-0.99-0/copula/man/psiDabsMC.Rd |only
copula-0.99-0/copula/man/rF01FrankJoe.Rd |only
copula-0.99-0/copula/man/rFFrankJoe.Rd |only
copula-0.99-0/copula/man/retstable.Rd |only
copula-0.99-0/copula/man/rlog.Rd |only
copula-0.99-0/copula/man/rnacModel.Rd |only
copula-0.99-0/copula/man/rnacopula.Rd |only
copula-0.99-0/copula/man/rnchild.Rd |only
copula-0.99-0/copula/man/rstable1.Rd |only
copula-0.99-0/copula/man/safeUroot.Rd |only
copula-0.99-0/copula/man/setTheta.Rd |only
copula-0.99-0/copula/man/splom2.Rd |only
copula-0.99-0/copula/man/tauAMH.Rd |only
copula-0.99-0/copula/man/timing.Rd |only
copula-0.99-0/copula/misc |only
copula-0.99-0/copula/src/Anfun.c | 99 ++----
copula-0.99-0/copula/src/Anfun.h | 47 +-
copula-0.99-0/copula/src/R_debye.c | 42 +-
copula-0.99-0/copula/src/cop_gsl.h |only
copula-0.99-0/copula/src/copula.h |only
copula-0.99-0/copula/src/empcop.stat.c | 82 ++---
copula-0.99-0/copula/src/empcop.stat.h | 97 ++++-
copula-0.99-0/copula/src/empcopm.test.c | 157 ++++-----
copula-0.99-0/copula/src/empcops.test.c | 141 ++++----
copula-0.99-0/copula/src/empcopsm.test.c | 134 ++++----
copula-0.99-0/copula/src/empcopu.test.c | 136 ++++----
copula-0.99-0/copula/src/evtest.c | 410 ++++++++++++-------------
copula-0.99-0/copula/src/exchtest.c | 272 ++++++++--------
copula-0.99-0/copula/src/fgm.c | 70 ++--
copula-0.99-0/copula/src/gof.c | 179 +++++------
copula-0.99-0/copula/src/gof.h |only
copula-0.99-0/copula/src/gsl_debye.c | 14
copula-0.99-0/copula/src/init.c |only
copula-0.99-0/copula/src/logseries.c | 40 +-
copula-0.99-0/copula/src/nacopula.h |only
copula-0.99-0/copula/src/polyn_eval.c |only
copula-0.99-0/copula/src/rF01Frank.c |only
copula-0.99-0/copula/src/rF01Joe.c |only
copula-0.99-0/copula/src/rLog.c |only
copula-0.99-0/copula/src/rSibuya.c |only
copula-0.99-0/copula/src/retstable.c |only
copula-0.99-0/copula/src/set.utils.c | 73 ++--
copula-0.99-0/copula/src/set.utils.h | 42 +-
copula-0.99-0/copula/tests/Stirling-etc.R |only
copula-0.99-0/copula/tests/copula-play.R |only
copula-0.99-0/copula/tests/estim-ex.R |only
copula-0.99-0/copula/tests/gof-ex.R |only
copula-0.99-0/copula/tests/nac-experi.R |only
copula-0.99-0/copula/tests/pdf.R | 168 +++++++---
copula-0.99-0/copula/tests/retstable-ex.R |only
copula-0.99-0/copula/tests/rstable-ex.R |only
copula-0.99-0/copula/tests/tail.R | 20 +
173 files changed, 3785 insertions(+), 3366 deletions(-)
Title: Composite-likelihood based Analysis of Random Fields
Diff between CompRandFld versions 1.0.0 dated 2011-09-10 and 1.0.1 dated 2012-03-30
Description: The aim of this package is to collect a set of procedures
for the analysis of Random Fields by Composite Likelihood
methods. Spatial analysis often involves dealing with large
dataset. Therefore even simple studies may be too
computationally demanding. Composite likelihood based methods
are emerging as useful tools for mitigating such computational
problems and show satisfactory results when compared with other
techniques such as, for example the tapering method. Moreover,
composite likelihood (and related quantities) have some good
properties similar to those of the standard likelihood.
Author: Simone Padoan
Maintainer: Simone Padoan
DESCRIPTION | 18
MD5 | 84 ++--
NAMESPACE |only
R/CompositeLikelihood.r | 47 +-
R/Covariogram.r | 396 +++++++++++++--------
R/Distributions.r | 25 -
R/EmpiricalEstimators.r | 70 ++-
R/Fitting.r | 85 ++--
R/Likelihood.r | 373 +++++++++++++-------
R/Simulation.r | 135 +++++++
R/Statistics.r |only
R/Utility.r | 745 ++++++++++++++++++----------------------
R/WeightedLeastSquare.r | 69 ++-
inst/doc/CompRandFld-manual.pdf |binary
man/CheckCorrModel.Rd | 13
man/CheckInput.Rd | 34 +
man/CheckLikelihood.Rd | 13
man/CheckModel.Rd | 13
man/CheckType.Rd | 13
man/CheckVarType.Rd | 8
man/CompLikelihood.Rd | 16
man/CorrelationParam.Rd | 5
man/Covariogram.Rd | 149 ++++++--
man/Dist2Dist.Rd | 6
man/EVariogram.Rd | 260 +++++++++++--
man/FitComposite.Rd | 339 ++++++++++++------
man/FitGev.Rd | 6
man/GevLogLik.Rd | 4
man/HypoTest.Rd |only
man/InitParam.Rd | 39 +-
man/Likelihood.Rd | 22 -
man/MomEst.Rd | 5
man/NuisanceParam.Rd | 5
man/RFsim.Rd |only
man/WLeastSquare.Rd | 89 ++--
man/WlsInit.Rd | 27 +
src/CompositeLikelihood.c | 172 ++-------
src/CorrelationFunction.c | 236 ++++++++----
src/Distributions.c | 39 +-
src/Godambe.c | 564 +++++++++++++++++++++++++-----
src/Gradient.c | 197 +++++++---
src/Utility.c | 339 +++++++++++++++---
src/header.h | 103 +++--
src/mvndstpack.f | 86 ++--
src/weightedleastsquare.c | 134 ++++++-
45 files changed, 3345 insertions(+), 1638 deletions(-)
Title: Explore life histories
Diff between Biograph versions 1.0 dated 2011-01-26 and 2.0 dated 2012-03-30
Description: Biograph is designed to facilitate the descriptive and
statistical analysis of life histories. It follows a
multistate perspective on the life course and conceptualizes
the life course as a sequence of states and transitions between
states (events). Transitions are governed by transition rates
that depend on event counts and exposure times. Transition
rates also depend on covariates. Biograph produces useful
graphics and computes life-course indicators for individuals
and groups. The package structures the data for multistate
statistical and demographic modeling of life histories. The
package accepts data in a Biograph format. The Doc subdirectory
of the package contains a description of how to prepare
Biograph objects. It includes several illustrations and R code.
Author: Frans Willekens
Maintainer: Frans Willekens
Biograph-1.0/Biograph/R/CMC.ages.R |only
Biograph-1.0/Biograph/R/CMC.years.R |only
Biograph-1.0/Biograph/R/GLHS.Biograph.R |only
Biograph-1.0/Biograph/R/GLHS.txt_to_R.R |only
Biograph-1.0/Biograph/R/IllnessDeath.GLHS.R |only
Biograph-1.0/Biograph/R/Lexislines.episodes.R |only
Biograph-1.0/Biograph/R/MSLT.S.plot.R |only
Biograph-1.0/Biograph/R/Rates.R |only
Biograph-1.0/Biograph/R/StackGraph.R |only
Biograph-1.0/Biograph/R/p.OverviewEpisodes.R |only
Biograph-1.0/Biograph/R/p.OverviewTransitions.R |only
Biograph-1.0/Biograph/R/p.SamplePath.R |only
Biograph-1.0/Biograph/R/p.Trans.R |only
Biograph-1.0/Biograph/R/p.rates.R |only
Biograph-1.0/Biograph/R/p.tableBiograph.R |only
Biograph-1.0/Biograph/R/statesequence.ind.R |only
Biograph-1.0/Biograph/R/trans.GLHS.R |only
Biograph-1.0/Biograph/data/rrdat.rda |only
Biograph-1.0/Biograph/man/CMC.ages.Rd |only
Biograph-1.0/Biograph/man/CMC.years.Rd |only
Biograph-1.0/Biograph/man/GLHS.Biograph.Rd |only
Biograph-1.0/Biograph/man/IllnessDeath.GLHS.Rd |only
Biograph-1.0/Biograph/man/Rates.Rd |only
Biograph-1.0/Biograph/man/StackGraph.Rd |only
Biograph-1.0/Biograph/man/p.OverviewEpisodes.Rd |only
Biograph-1.0/Biograph/man/p.SamplePath.Rd |only
Biograph-1.0/Biograph/man/p.Trans.Rd |only
Biograph-1.0/Biograph/man/p.rates.Rd |only
Biograph-1.0/Biograph/man/p.tableBiograph.Rd |only
Biograph-1.0/Biograph/man/rrdat.Rd |only
Biograph-1.0/Biograph/man/statesequence.ind.Rd |only
Biograph-1.0/Biograph/man/trans.GLHS.Rd |only
Biograph-2.0/Biograph/DESCRIPTION | 26 +-
Biograph-2.0/Biograph/INDEX |only
Biograph-2.0/Biograph/MD5 |only
Biograph-2.0/Biograph/NAMESPACE |only
Biograph-2.0/Biograph/NEWS.R |only
Biograph-2.0/Biograph/R/AgeTrans.R | 41 +--
Biograph-2.0/Biograph/R/Biograph.long.R | 81 ++++---
Biograph-2.0/Biograph/R/Biograph.msm.R | 37 +--
Biograph-2.0/Biograph/R/Biograph.mstate.R | 34 +--
Biograph-2.0/Biograph/R/Biograph.mvna.R | 60 +++--
Biograph-2.0/Biograph/R/ChangeObservationWindow.e.R | 90 +++++---
Biograph-2.0/Biograph/R/ChangeObservationWindow.t.R | 81 ++++---
Biograph-2.0/Biograph/R/Cumrates.R | 146 +++++--------
Biograph-2.0/Biograph/R/Date.as.age.R |only
Biograph-2.0/Biograph/R/Date.as.cmc.R |only
Biograph-2.0/Biograph/R/Date.as.year.R |only
Biograph-2.0/Biograph/R/GLHS.IllnessDeath.R |only
Biograph-2.0/Biograph/R/GLHS.trans.R |only
Biograph-2.0/Biograph/R/Lexis.lines.r |only
Biograph-2.0/Biograph/R/Lexis.points.r |only
Biograph-2.0/Biograph/R/LexisOccExp.R | 116 +++++-----
Biograph-2.0/Biograph/R/Lexislines.episodes.r |only
Biograph-2.0/Biograph/R/Lexispoints.R | 37 +--
Biograph-2.0/Biograph/R/MSLT.S.R | 22 +
Biograph-2.0/Biograph/R/MSLT.e.R | 9
Biograph-2.0/Biograph/R/Occup.R | 77 ++++--
Biograph-2.0/Biograph/R/OverviewEpisodes.R |only
Biograph-2.0/Biograph/R/OverviewTransitions.R | 45 ++--
Biograph-2.0/Biograph/R/Parameters.R | 188 +++++++----------
Biograph-2.0/Biograph/R/RateTable.R | 3
Biograph-2.0/Biograph/R/Rates.ac.R |only
Biograph-2.0/Biograph/R/Remove.intrastate.R | 46 ++--
Biograph-2.0/Biograph/R/SamplePath.R |only
Biograph-2.0/Biograph/R/Sequences.R | 48 ++--
Biograph-2.0/Biograph/R/Sequences.ind.0.R |only
Biograph-2.0/Biograph/R/Sequences.ind.R |only
Biograph-2.0/Biograph/R/StateSpace.R | 71 +++---
Biograph-2.0/Biograph/R/Trans.R | 38 +--
Biograph-2.0/Biograph/R/TransitionAB.R | 70 +++---
Biograph-2.0/Biograph/R/YearTrans.R | 39 +--
Biograph-2.0/Biograph/R/age.as.Date.R |only
Biograph-2.0/Biograph/R/age.as.year.R |only
Biograph-2.0/Biograph/R/check.par.R |only
Biograph-2.0/Biograph/R/cmc.as.Date.R |only
Biograph-2.0/Biograph/R/cmc.as.age.R |only
Biograph-2.0/Biograph/R/cmc.as.year.R |only
Biograph-2.0/Biograph/R/date.b.R |only
Biograph-2.0/Biograph/R/date.convert.R |only
Biograph-2.0/Biograph/R/locpath.R | 5
Biograph-2.0/Biograph/R/plot.MSLT.S.r |only
Biograph-2.0/Biograph/R/plot.cumrates.R |only
Biograph-2.0/Biograph/R/plot.occup.S.R |only
Biograph-2.0/Biograph/R/pos.char.R | 7
Biograph-2.0/Biograph/R/pos.charstr.R |only
Biograph-2.0/Biograph/R/string.blank.omit.R | 1
Biograph-2.0/Biograph/R/stringf.R | 1
Biograph-2.0/Biograph/R/transitions.R |only
Biograph-2.0/Biograph/R/year.as.Date.R |only
Biograph-2.0/Biograph/R/year.as.age.R |only
Biograph-2.0/Biograph/R/year.as.cmc.R |only
Biograph-2.0/Biograph/data/GLHS.rda |binary
Biograph-2.0/Biograph/data/NLOG98.rda |binary
Biograph-2.0/Biograph/inst |only
Biograph-2.0/Biograph/man/AgeTrans.Rd | 14 -
Biograph-2.0/Biograph/man/Biograph-package.Rd | 61 +++--
Biograph-2.0/Biograph/man/Biograph.long.Rd | 12 -
Biograph-2.0/Biograph/man/Biograph.msm.Rd | 7
Biograph-2.0/Biograph/man/Biograph.mstate.Rd | 21 +
Biograph-2.0/Biograph/man/Biograph.mvna.Rd | 24 +-
Biograph-2.0/Biograph/man/ChangeObservationWindow.e.Rd | 9
Biograph-2.0/Biograph/man/ChangeObservationWindow.t.Rd | 11
Biograph-2.0/Biograph/man/Cumrates.Rd | 30 +-
Biograph-2.0/Biograph/man/Date.as.age.Rd |only
Biograph-2.0/Biograph/man/Date.as.cmc.Rd |only
Biograph-2.0/Biograph/man/Date.as.year.Rd |only
Biograph-2.0/Biograph/man/GLHS.IllnessDeath.Rd |only
Biograph-2.0/Biograph/man/GLHS.Rd | 7
Biograph-2.0/Biograph/man/GLHS.trans.Rd |only
Biograph-2.0/Biograph/man/Lexis.lines.Rd |only
Biograph-2.0/Biograph/man/Lexis.points.Rd |only
Biograph-2.0/Biograph/man/LexisOccExp.Rd | 12 -
Biograph-2.0/Biograph/man/Lexislines.episodes.Rd | 29 +-
Biograph-2.0/Biograph/man/Lexispoints.Rd | 20 +
Biograph-2.0/Biograph/man/MSLT.Rd | 45 ++--
Biograph-2.0/Biograph/man/NLOG98.Rd | 68 +++---
Biograph-2.0/Biograph/man/Occup.Rd | 20 -
Biograph-2.0/Biograph/man/OverviewEpisodes.Rd |only
Biograph-2.0/Biograph/man/OverviewTransitions.Rd | 27 --
Biograph-2.0/Biograph/man/Parameters.Rd | 61 +++--
Biograph-2.0/Biograph/man/RateTable.Rd | 13 -
Biograph-2.0/Biograph/man/Rates.ac.Rd |only
Biograph-2.0/Biograph/man/Remove.intrastate.Rd | 10
Biograph-2.0/Biograph/man/SamplePath.Rd |only
Biograph-2.0/Biograph/man/Sequences.Rd | 19 -
Biograph-2.0/Biograph/man/Sequences.ind.0.Rd |only
Biograph-2.0/Biograph/man/Sequences.ind.Rd |only
Biograph-2.0/Biograph/man/StateSpace.Rd | 13 -
Biograph-2.0/Biograph/man/Trans.Rd | 12 -
Biograph-2.0/Biograph/man/TransitionAB.Rd | 31 ++
Biograph-2.0/Biograph/man/YearTrans.Rd | 16 -
Biograph-2.0/Biograph/man/age.as.Date.Rd |only
Biograph-2.0/Biograph/man/age.as.year.Rd |only
Biograph-2.0/Biograph/man/check.par.Rd |only
Biograph-2.0/Biograph/man/cmc.as.Date.Rd |only
Biograph-2.0/Biograph/man/cmc.as.age.Rd |only
Biograph-2.0/Biograph/man/cmc.as.year.Rd |only
Biograph-2.0/Biograph/man/date.b.Rd |only
Biograph-2.0/Biograph/man/date.convert.Rd |only
Biograph-2.0/Biograph/man/locpath.Rd | 10
Biograph-2.0/Biograph/man/plot.MSLT.S.Rd |only
Biograph-2.0/Biograph/man/plot.cumrates.Rd |only
Biograph-2.0/Biograph/man/plot.occup.S.Rd |only
Biograph-2.0/Biograph/man/pos.char.Rd | 8
Biograph-2.0/Biograph/man/pos.charstr.Rd |only
Biograph-2.0/Biograph/man/string.blank.omit.Rd | 2
Biograph-2.0/Biograph/man/stringf.Rd | 9
Biograph-2.0/Biograph/man/transitions.Rd |only
Biograph-2.0/Biograph/man/year.as.Date.Rd |only
Biograph-2.0/Biograph/man/year.as.age.Rd |only
Biograph-2.0/Biograph/man/year.as.cmc.Rd |only
152 files changed, 1124 insertions(+), 916 deletions(-)
Title: classes and methods for spatio-temporal data
Diff between spacetime versions 0.6-0 dated 2012-03-13 and 0.6-2 dated 2012-03-30
Description: A package with classes and methods for spatio-temporal
data. In particular, space-time regular lattices, sparse
lattices, and irregular data are supported, with limited
support for trajectories, but not for topologies with S/T
interactions such as space-time prisms. Utility functions are
provided for plotting data as map sequences (lattice or
animation) or multiple time series; for spatial and temporal
selection, as well as methods for retrieving coordinates, for
subsetting, print, summary, etc.
Author: Edzer Pebesma [cre, aut], Benedict Graeler [ctb], Tom Gottfried
[ctb]
Maintainer: Edzer Pebesma
spacetime-0.6-0/spacetime/R/traj.R |only
spacetime-0.6-0/spacetime/inst/doc/1 |only
spacetime-0.6-2/spacetime/DESCRIPTION | 22
spacetime-0.6-2/spacetime/MD5 | 34
spacetime-0.6-2/spacetime/R/Class-STTDF.R |only
spacetime-0.6-2/spacetime/R/STTDF-methods.R |only
spacetime-0.6-2/spacetime/R/bind.R | 7
spacetime-0.6-2/spacetime/R/over.R | 4
spacetime-0.6-2/spacetime/inst/doc/cls.fig | 10
spacetime-0.6-2/spacetime/inst/doc/cls.pdf |binary
spacetime-0.6-2/spacetime/inst/doc/spacetime.Rnw | 336 -
spacetime-0.6-2/spacetime/inst/doc/spacetime.bib | 6
spacetime-0.6-2/spacetime/inst/doc/spacetime.pdf | 5529 ++++++++++++-----------
spacetime-0.6-2/spacetime/inst/doc/sto.Rnw | 27
spacetime-0.6-2/spacetime/inst/doc/sto.pdf |binary
spacetime-0.6-2/spacetime/inst/doc/stpg.pdf |binary
spacetime-0.6-2/spacetime/inst/doc/tp.pdf |only
spacetime-0.6-2/spacetime/inst/doc/ts.pdf |only
spacetime-0.6-2/spacetime/man/STTDF-class.Rd | 4
spacetime-0.6-2/spacetime/tests/traj.R | 9
spacetime-0.6-2/spacetime/tests/traj.Rout.save | 9
21 files changed, 3223 insertions(+), 2774 deletions(-)
Title: MIXture MODelling Package
Diff between Rmixmod versions 1.0 dated 2012-01-15 and 1.1.0 dated 2012-03-30
Description: High Performance Model-Based Cluster and Discriminant
Analysis
Author: Remi Lebret and Serge Iovleff and Florent Langrognet, with
contributions from C. Biernacki and G. Celeux and G. Govaert
Maintainer: Remi Lebret
Rmixmod-1.0/Rmixmod/R/Algo.R |only
Rmixmod-1.0/Rmixmod/R/MixmodClustering.R |only
Rmixmod-1.0/Rmixmod/man/Algo-class.Rd |only
Rmixmod-1.0/Rmixmod/man/MixmodClustering-class.Rd |only
Rmixmod-1.0/Rmixmod/man/mixmodAlgo.Rd |only
Rmixmod-1.0/Rmixmod/man/mixmodClustering.Rd |only
Rmixmod-1.0/Rmixmod/src/BinaryOutputHandling.cpp |only
Rmixmod-1.0/Rmixmod/src/BinaryOutputHandling.h |only
Rmixmod-1.0/Rmixmod/src/GaussianOutputHandling.cpp |only
Rmixmod-1.0/Rmixmod/src/GaussianOutputHandling.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMCondExe.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMCondExe.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMDCVCriterion.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMDCVCriterion.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMEstimation.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMEstimation.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMInputControler.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMInputControler.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMMain.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMMain.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOldInput.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOldInput.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOldModelOutput.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOldModelOutput.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOutput.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOutput.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOutputControler.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMOutputControler.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMSelection.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMSelection.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMStrategy.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMStrategy.h |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMStrategyInit.cpp |only
Rmixmod-1.0/Rmixmod/src/MIXMOD/XEMStrategyInit.h |only
Rmixmod-1.1.0/Rmixmod/DESCRIPTION | 42
Rmixmod-1.1.0/Rmixmod/LICENSE |only
Rmixmod-1.1.0/Rmixmod/MD5 | 415 ++---
Rmixmod-1.1.0/Rmixmod/NAMESPACE | 21
Rmixmod-1.1.0/Rmixmod/R/GaussianModel.R | 331 +++-
Rmixmod-1.1.0/Rmixmod/R/GaussianParameter.R | 102 -
Rmixmod-1.1.0/Rmixmod/R/Mixmod.R | 568 +++++--
Rmixmod-1.1.0/Rmixmod/R/MixmodCluster.R |only
Rmixmod-1.1.0/Rmixmod/R/MixmodDAResults.R |only
Rmixmod-1.1.0/Rmixmod/R/MixmodLearn.R |only
Rmixmod-1.1.0/Rmixmod/R/MixmodPredict.R |only
Rmixmod-1.1.0/Rmixmod/R/MixmodResults.R |only
Rmixmod-1.1.0/Rmixmod/R/Model.R | 61
Rmixmod-1.1.0/Rmixmod/R/MultinomialModel.R | 336 +++-
Rmixmod-1.1.0/Rmixmod/R/MultinomialParameter.R | 118 -
Rmixmod-1.1.0/Rmixmod/R/Parameter.R | 6
Rmixmod-1.1.0/Rmixmod/R/Rmixmod.R | 86 -
Rmixmod-1.1.0/Rmixmod/R/Strategy.R |only
Rmixmod-1.1.0/Rmixmod/R/global.R | 277 +++
Rmixmod-1.1.0/Rmixmod/R/zzz.R |only
Rmixmod-1.1.0/Rmixmod/data/birds.rda |binary
Rmixmod-1.1.0/Rmixmod/data/car.rda |only
Rmixmod-1.1.0/Rmixmod/data/geyser.rda |binary
Rmixmod-1.1.0/Rmixmod/man/GaussianModel-class.Rd | 14
Rmixmod-1.1.0/Rmixmod/man/GaussianParameter-class.Rd | 17
Rmixmod-1.1.0/Rmixmod/man/Mixmod-class.Rd | 67
Rmixmod-1.1.0/Rmixmod/man/MixmodCluster-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/MixmodDAResults-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/MixmodLearn-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/MixmodPredict-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/MixmodResults-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/Model-class.Rd | 18
Rmixmod-1.1.0/Rmixmod/man/MultinomialModel-class.Rd | 16
Rmixmod-1.1.0/Rmixmod/man/MultinomialParameter-class.Rd | 20
Rmixmod-1.1.0/Rmixmod/man/Parameter-class.Rd | 12
Rmixmod-1.1.0/Rmixmod/man/Rmixmod-package.Rd | 55
Rmixmod-1.1.0/Rmixmod/man/Strategy-class.Rd |only
Rmixmod-1.1.0/Rmixmod/man/asQualitative.Rd |only
Rmixmod-1.1.0/Rmixmod/man/birds.Rd | 18
Rmixmod-1.1.0/Rmixmod/man/car.Rd |only
Rmixmod-1.1.0/Rmixmod/man/ellipse.Rd |only
Rmixmod-1.1.0/Rmixmod/man/extract-methods.Rd | 41
Rmixmod-1.1.0/Rmixmod/man/geyser.Rd | 4
Rmixmod-1.1.0/Rmixmod/man/hist-methods.Rd | 34
Rmixmod-1.1.0/Rmixmod/man/histCluster.Rd |only
Rmixmod-1.1.0/Rmixmod/man/initialize-methods.Rd | 32
Rmixmod-1.1.0/Rmixmod/man/isQualitative.Rd |only
Rmixmod-1.1.0/Rmixmod/man/matrix2binary.Rd |only
Rmixmod-1.1.0/Rmixmod/man/mixmodCluster.Rd |only
Rmixmod-1.1.0/Rmixmod/man/mixmodGaussianModel.Rd | 13
Rmixmod-1.1.0/Rmixmod/man/mixmodLearn.Rd |only
Rmixmod-1.1.0/Rmixmod/man/mixmodMultinomialModel.Rd | 17
Rmixmod-1.1.0/Rmixmod/man/mixmodPredict.Rd |only
Rmixmod-1.1.0/Rmixmod/man/mixmodStrategy.Rd |only
Rmixmod-1.1.0/Rmixmod/man/nbFactorFromData.Rd |only
Rmixmod-1.1.0/Rmixmod/man/plot-methods.Rd | 39
Rmixmod-1.1.0/Rmixmod/man/plotCluster.Rd |only
Rmixmod-1.1.0/Rmixmod/man/print-methods.Rd | 124 -
Rmixmod-1.1.0/Rmixmod/man/show-methods.Rd | 114 -
Rmixmod-1.1.0/Rmixmod/man/sortByCriterion-methods.Rd |only
Rmixmod-1.1.0/Rmixmod/man/summary-methods.Rd | 52
Rmixmod-1.1.0/Rmixmod/man/titanic.Rd | 8
Rmixmod-1.1.0/Rmixmod/man/vector2binary.Rd |only
Rmixmod-1.1.0/Rmixmod/src/ClusteringInputHandling.cpp |only
Rmixmod-1.1.0/Rmixmod/src/ClusteringInputHandling.h |only
Rmixmod-1.1.0/Rmixmod/src/ClusteringOutputHandling.cpp |only
Rmixmod-1.1.0/Rmixmod/src/ClusteringOutputHandling.h |only
Rmixmod-1.1.0/Rmixmod/src/Conversion.cpp | 144 +
Rmixmod-1.1.0/Rmixmod/src/Conversion.h | 44
Rmixmod-1.1.0/Rmixmod/src/InputHandling.cpp | 283 ---
Rmixmod-1.1.0/Rmixmod/src/InputHandling.h | 92 -
Rmixmod-1.1.0/Rmixmod/src/LearnOutputHandling.cpp |only
Rmixmod-1.1.0/Rmixmod/src/LearnOutputHandling.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMAlgo.cpp | 5
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMAlgo.h | 13
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBICCriterion.cpp | 40
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBICCriterion.h | 12
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryData.cpp | 20
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryData.h | 23
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEParameter.cpp | 22
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEParameter.h | 7
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEjParameter.cpp | 50
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEjParameter.h | 7
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkParameter.cpp | 25
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkParameter.h | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkjParameter.cpp | 27
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkjParameter.h | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkjhParameter.cpp | 55
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryEkjhParameter.h | 20
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryModel.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryModel.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryParameter.cpp | 48
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinaryParameter.h | 19
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMBinarySample.cpp | 3
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCEMAlgo.cpp | 3
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCEMAlgo.h | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCVCriterion.cpp | 119 -
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCVCriterion.h | 39
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringInput.cpp | 118 +
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringInput.h | 35
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringMain.cpp | 296 ++-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringMain.h | 46
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringModelOutput.cpp | 34
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringModelOutput.h | 9
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringOutput.cpp | 79
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringOutput.h | 68
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringStrategy.cpp | 175 +-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringStrategy.h | 169 --
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringStrategyInit.cpp | 240 ++-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMClusteringStrategyInit.h | 29
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCriterion.cpp | 19
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCriterion.h | 38
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCriterionOutput.cpp | 14
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMCriterionOutput.h | 24
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMData.cpp | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMData.h | 5
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDataDescription.cpp | 6
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDataDescription.h | 1
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDescription.cpp | 13
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDescription.h | 16
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDiagMatrix.cpp | 17
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMDiagMatrix.h | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMEMAlgo.cpp | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMEMAlgo.h | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMError.cpp | 9
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMError.h | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianData.cpp | 9
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianData.h | 15
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianDiagParameter.cpp | 2
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianDiagParameter.h | 7
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianEDDAParameter.cpp | 38
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianEDDAParameter.h | 22
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianGeneralParameter.cpp | 48
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianGeneralParameter.h | 23
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianHDDAParameter.cpp | 15
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianHDDAParameter.h | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianParameter.cpp | 16
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianParameter.h | 12
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianSample.cpp | 3
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianSphericalParameter.cpp | 1
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGaussianSphericalParameter.h | 2
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGeneralMatrix.cpp | 13
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMGeneralMatrix.h | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMICLCriterion.cpp | 35
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMICLCriterion.h | 13
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMIndividualColumnDescription.cpp | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMIndividualColumnDescription.h | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMInput.cpp | 159 +-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMInput.h | 215 --
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLabel.cpp | 79
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLabel.h | 46
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLabelDescription.cpp | 85 -
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLabelDescription.h | 32
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnInput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnInput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnMain.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnMain.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnModelOutput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnModelOutput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnOutput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnOutput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnStrategy.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLearnStrategy.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLikelihoodOutput.cpp | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMLikelihoodOutput.h | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMMAPAlgo.cpp | 11
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMMAPAlgo.h | 19
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMMAlgo.cpp | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMMAlgo.h | 20
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMMatrix.h | 7
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModel.cpp | 409 +----
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModel.h | 167 +-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModelOutput.cpp | 73
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModelOutput.h | 138 -
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModelType.cpp | 516 ++++++
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMModelType.h | 35
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMNECCriterion.cpp | 38
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMNECCriterion.h | 15
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMParameter.cpp | 13
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMParameter.h | 11
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMParameterDescription.cpp | 127 +
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMParameterDescription.h | 59
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPartition.cpp | 41
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPartition.h | 6
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictInput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictInput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictMain.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictMain.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictModelOutput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictModelOutput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictOutput.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictOutput.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictStrategy.cpp |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMPredictStrategy.h |only
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProba.cpp | 32
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProba.h | 30
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProbaDescription.cpp | 32
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProbaDescription.h | 10
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProbaOutput.cpp | 20
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMProbaOutput.h | 22
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMQualitativeColumnDescription.cpp | 6
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMQualitativeColumnDescription.h | 2
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMRandom.cpp | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSEMAlgo.cpp | 8
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSEMAlgo.h | 19
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSample.cpp | 1
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSample.h | 2
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSphericalMatrix.cpp | 15
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSphericalMatrix.h | 9
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSymmetricMatrix.cpp | 16
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMSymmetricMatrix.h | 4
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMUtil.cpp | 793 +---------
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/XEMUtil.h | 227 +-
Rmixmod-1.1.0/Rmixmod/src/MIXMOD/mixmod_r.mk | 159 --
Rmixmod-1.1.0/Rmixmod/src/Makevars | 13
Rmixmod-1.1.0/Rmixmod/src/NEWMAT/newmat_r.mk | 8
Rmixmod-1.1.0/Rmixmod/src/OutputHandling.cpp | 154 +
Rmixmod-1.1.0/Rmixmod/src/OutputHandling.h | 81 -
Rmixmod-1.1.0/Rmixmod/src/clusteringMain.cpp | 89 -
Rmixmod-1.1.0/Rmixmod/src/learnMain.cpp |only
Rmixmod-1.1.0/Rmixmod/src/predictMain.cpp |only
255 files changed, 5909 insertions(+), 4214 deletions(-)
Title: statistical methods for analysing multivariate abundance data
Diff between mvabund versions 2.3-3 dated 2012-03-24 and 2.3-4.1 dated 2012-03-30
Description: A set of tools for displaying, modeling and analysing
multivariate abundance data in community ecology. See
mvabund-package.Rd for details of overall package organization.
The package is implemented with the Gnu Scientific Library
(http://www.gnu.org/software/gsl/) and Rcpp
(http://dirk.eddelbuettel.com/code/rcpp.html) R / C++ classes.
Author: Yi Wang, Ulrike Naumann, Stephen Wright and David Warton
Maintainer: Yi Wang
DESCRIPTION | 8
MD5 | 14 -
R/anova.manyglm.R | 26 +-
R/summary.manyglm.R | 5
src/glm.cpp | 85 +------
src/glmtest.cpp | 611 +++++++++++++++++++++++++++-------------------------
src/io.cpp | 25 --
src/resampTest.h | 5
8 files changed, 380 insertions(+), 399 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-12 0.9-0
2011-10-20 0.8-1
2011-10-18 0.8-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-11 2.15
2010-04-20 2.14
2010-01-26 2.13
2009-10-13 2.12
2009-09-18 2.11
2009-08-19 2.10
2008-11-21 2.09
2008-10-07 2.08
2007-06-11 2.07
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-15 1.0-5
2012-02-22 1.0-4
2012-01-14 1.0-3
2011-11-20 1.0-2
2011-10-18 1.0-1
2011-10-04 1.0-0
2011-08-13 0.9996875-3
2011-08-10 0.9996875-2
2011-08-09 0.9996875-1
2011-04-09 0.999375-50
2011-04-01 0.999375-49
2011-03-17 0.999375-48
2011-02-24 0.999375-47
2010-12-15 0.999375-46
2010-11-11 0.999375-45
2010-09-13 0.999375-44
2010-08-05 0.999375-43
2010-07-15 0.999375-42
2010-07-03 0.999375-41
2010-06-04 0.999375-40
2010-05-19 0.999375-39
2010-04-02 0.999375-38
2010-02-05 0.999375-37
2010-02-04 0.999375-36
2010-02-03 0.999375-35
2009-12-11 0.999375-33
2009-11-22 0.999375-32
2009-10-08 0.999375-31
2009-07-30 0.999375-30
2009-06-11 0.999375-29
2009-06-09 0.999375-28
2009-05-25 0.999375-27
2009-04-29 0.999375-26
2009-04-19 0.999375-25
2009-03-31 0.999375-23
2009-03-13 0.999375-22
2009-02-15 0.999375-21
2009-02-01 0.999375-20
2009-01-30 0.999375-19
2009-01-20 0.999375-18
2008-12-11 0.999375-17
2008-10-19 0.999375-16
2008-09-28 0.999375-15
2008-09-09 0.999375-14
2008-08-31 0.999375-13
2008-07-28 0.999375-11
2008-06-26 0.999375-10
2008-03-30 0.999375-9
2008-03-26 0.999375-8
2008-03-24 0.999375-7
2008-03-21 0.999375-6
2008-03-07 0.999375-5
2008-01-13 0.999375-4
2007-10-07 0.999375-3
2007-08-25 0.999375-2
2007-08-03 0.999375-1
2007-07-07 0.999375-0
2007-06-07 0.99875-2
Title: A set of tools for residential segregation research
Diff between seg versions 0.1-0 dated 2011-05-09 and 0.1-2 dated 2012-03-30
Description: A package that provides functions to measure the overall
degree of residential segregation. The methods implemented in
this package include Reardon and O'Sullivan's spatial
segregation measures (exposure/isolation, spatial
dissimilarity, spatial information theory, and relative
diversity indices).
Author: Seong-Yun Hong, David O'Sullivan
Maintainer: Seong-Yun Hong
DESCRIPTION | 8 ++++----
MD5 |only
data/auckpop2006.rda |binary
3 files changed, 4 insertions(+), 4 deletions(-)
Title: Palaeoecological and Palaeogeographical Analysis Tools
Diff between fossil versions 0.3.5 dated 2011-08-17 and 0.3.7 dated 2012-03-30
Description: A set of analytical tools useful in analysing ecological
and geographical data sets, both ancient and modern. The
package includes functions for estimating species richness
(Chao 1 and 2, ACE, ICE, Jacknife), shared species/beta
diversity, species area curves and geographic distances and
areas.
Author: Matthew J. Vavrek
Maintainer: Matthew J. Vavrek
DESCRIPTION | 11 +++++------
MD5 | 13 ++++++++-----
NAMESPACE |only
R/aic.nest.R |only
R/earth.dist.R | 8 +++-----
R/sim.occ.R | 6 +++---
man/aic.nest.Rd |only
man/earth.dist.Rd | 2 +-
man/sim.occ.Rd | 2 +-
9 files changed, 21 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-11 0.8.9
2009-12-21 0.8.8
2009-09-23 0.8.7
2009-08-21 0.8.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-15 0.2.0
Title: Empirical Research in Economics with R
Diff between erer versions 1.0 dated 2011-02-04 and 1.1 dated 2012-03-30
Description: This package contains functions and datasets for the book
of 'Empirical Research in Economics: Growing up with R' by Dr.
Changyou Sun. These functions can calculate marginal effects
for a binary probit or logit model, estimate static and dynamic
Almost Ideal Demand System (AIDS) models, and conduct event
analysis.
Author: Changyou Sun
Maintainer: Changyou Sun
erer-1.0/erer/inst/doc/Sun2007SJAFmanuscript.pdf |only
erer-1.0/erer/inst/doc/Sweave.sty |only
erer-1.0/erer/inst/doc/Wan2010JAAEmanuscript.pdf |only
erer-1.1/erer/DESCRIPTION | 8 +++----
erer-1.1/erer/MD5 | 24 ++++++++++-------------
erer-1.1/erer/NAMESPACE |only
erer-1.1/erer/R/aiData.r | 2 -
erer-1.1/erer/R/aiDynFit.r | 4 +--
erer-1.1/erer/R/aiStaHau.r | 6 ++---
erer-1.1/erer/R/bsLag.R | 4 +--
erer-1.1/erer/R/maTrend.R | 4 +--
erer-1.1/erer/inst/doc/erer-manual.pdf |binary
erer-1.1/erer/man/aiData.Rd | 4 +--
erer-1.1/erer/man/bsLag.Rd | 8 +++----
erer-1.1/erer/man/erer-package.Rd | 4 +--
15 files changed, 33 insertions(+), 35 deletions(-)
Title: Economic Design of Control Charts
Diff between edcc versions 0.2-1 dated 2012-01-06 and 0.2-3 dated 2012-03-30
Description: This package provides a unified approach for Economic
Design of Control Charts. The main purpose of this package is
to find out the optimal parameters to minimize the ECH
(Expected Cost per Hour) of the process.
Author: Weicheng Zhu, Changsoon Park
Maintainer: Weicheng Zhu
DESCRIPTION | 14 -
MD5 | 14 -
R/ecoDesign.R | 376 +++++++++++++++++++++++++++++++++++-----------------
R/internal.R | 13 -
man/contour.edcc.Rd | 6
man/ecoCusum.Rd | 45 ++++--
man/ecoEwma.Rd | 60 +++++---
man/ecoXbar.Rd | 51 +++++--
8 files changed, 395 insertions(+), 184 deletions(-)
Title: Dealing with very large datasets using BIRCH
Diff between birch versions 1.2 dated 2011-09-16 and 1.2-1 dated 2012-03-30
Description: birch is an implementation of the algorithms described in
Zhang et al (1997), and provides functions for creating
CF-trees, along with algorithms for dealing with some
combinatorial problems, such as covMcd and ltsReg. It is very
well suited for dealing with very large data sets, and does not
require that the data can fit in physical memory.
Author: Lysiane Charest, Justin Harrington, Matias Salibian-Barrera
Maintainer: Lysiane Charest
ChangeLog | 7
DESCRIPTION | 10 -
MD5 | 45 ++--
NAMESPACE | 46 ++--
R/birch.R | 378 +++++++++++++++++++-------------------
R/cluster.R | 176 ++++++++---------
R/corBirch.R |only
R/covMcdBirch.R | 232 +++++++++++------------
R/genericmethods.R | 500 +++++++++++++++++++++++++--------------------------
R/ltsBirch.R | 280 ++++++++++++++--------------
R/rlgaBirch.R | 222 +++++++++++-----------
data/birchObj.rda |binary
man/birch-package.Rd | 152 ++++++++-------
man/birch.Rd | 4
man/covMcd.birch.Rd | 166 ++++++++--------
man/kendall.Rd |only
man/lts.birch.Rd | 172 ++++++++---------
man/rlga.birch.Rd | 178 +++++++++---------
man/spearman.Rd |only
src/ll.cc | 132 +++++++++++++
src/ll.h | 14 -
src/ll_Leaf.cc | 4
src/ll_LeafNode.cc | 6
src/ll_Node.cc | 38 ++-
src/ll_other.cc | 8
25 files changed, 1467 insertions(+), 1303 deletions(-)