Title: Rcmdr plugin for time series
Diff between RcmdrPlugin.epack versions 1.2.4 dated 2010-06-12 and 1.2.5 dated 2012-03-31
More information about RcmdrPlugin.epack at CRAN
Description: This package provides an Rcmdr "plug-in" based on the time
series functions. Contributors: G. Jay Kerns, John Fox, and
Richard Heiberger.
Author: Erin Hodgess
Maintainer: Erin Hodgess
DESCRIPTION | 10 +++++-----
MD5 |only
NAMESPACE |only
R/RcmdrPlugin.epack.R | 46 ++++++++++++++++++++++++----------------------
4 files changed, 29 insertions(+), 27 deletions(-)
Permanent link
Title: Power and sample size calculation for survival analysis of
epidemiological studies
Diff between powerSurvEpi versions 0.0.5 dated 2009-04-17 and 0.0.6 dated 2012-03-31
Description: This package includes a set of functions to calculate
power and sample size for testing main effect or interaction
effect in the survival analysis of epidemiological studies
(non-randomized studies), taking into account the correlation
between the covariate of the interest and other covariates.
Some calculations also take into account the competing risks
and stratified analysis. This package also includes a set of
functions to calculate power and sample size for testing main
effect in the survival analysis of randomized clinical trials.
Author: Weiliang Qiu
Maintainer: Weiliang Qiu
powerSurvEpi-0.0.5/powerSurvEpi/data/Oph.R |only
powerSurvEpi-0.0.5/powerSurvEpi/data/Oph.csv |only
powerSurvEpi-0.0.6/powerSurvEpi/DESCRIPTION | 18 +++++++++---------
powerSurvEpi-0.0.6/powerSurvEpi/INDEX | 4 ++++
powerSurvEpi-0.0.6/powerSurvEpi/MD5 |only
powerSurvEpi-0.0.6/powerSurvEpi/NAMESPACE | 4 +++-
powerSurvEpi-0.0.6/powerSurvEpi/R/power.stratify.R |only
powerSurvEpi-0.0.6/powerSurvEpi/data/Oph.csv.gz |only
powerSurvEpi-0.0.6/powerSurvEpi/data/Oph.rda |only
powerSurvEpi-0.0.6/powerSurvEpi/log.txt |only
powerSurvEpi-0.0.6/powerSurvEpi/man/power.stratify.Rd |only
powerSurvEpi-0.0.6/powerSurvEpi/man/ssize.stratify.Rd |only
12 files changed, 16 insertions(+), 10 deletions(-)
Title: yaImpute: An R Package for k-NN Imputation
Diff between yaImpute versions 1.0-17 dated 2012-02-08 and 1.0-18 dated 2012-03-31
Description: Performs popular nearest neighbor routines for imputation
Author: Nicholas L. Crookston
Maintainer: Nicholas L. Crookston
COPYRIGHTS | 3
DESCRIPTION | 12
MD5 | 65 +-
NAMESPACE | 5
NEWS | 7
R/ann.R | 118 ++--
R/asciigridimpute.R | 934 ++++++++++++++++-----------------
R/compare.yai.R | 58 +-
R/cor.yai.R | 66 +-
R/correctbias.R | 274 ++++-----
R/errorstats.R | 350 ++++++------
R/findFactors.R | 194 +++---
R/foruse.R | 198 +++---
R/impute.R | 610 ++++++++++-----------
R/mostused.R | 32 -
R/newtargets.R | 474 ++++++++--------
R/notablydifferent.R |only
R/notablydistant.R | 200 +++----
R/plot.yai.R | 160 ++---
R/print.yai.R | 170 +++---
R/rmsd.yai.R | 102 +--
R/uniondatajoin.R | 118 ++--
R/vars.yai.R | 10
R/whatsMax.R | 78 +-
R/yai.R | 1217 +++++++++++++++++++++----------------------
R/yaiRFsummary.R | 92 +--
R/yaiVarImp.R | 74 +-
data/MoscowMtStJoe.RData |binary
data/TallyLake.RData |binary
man/correctbias.Rd | 2
man/notablydifferent.Rd |only
man/notablydistant.Rd | 8
man/plot.notablydifferent.Rd |only
man/plot.yai.Rd | 5
man/yai.Rd | 14
35 files changed, 2836 insertions(+), 2814 deletions(-)
Title: Exploring water quality monitoring data
Diff between wq versions 0.3-5 dated 2012-03-02 and 0.3-6 dated 2012-03-31
Description: Functions to assist in the processing and exploration of
data from monitoring programs for aquatic ecosystems. The name
"wq" stands for "water quality" and reflects a focus on time
series data for physical and chemical properties of water, as
well as the plankton. The package is intended for programs that
sample approximately monthly at discrete stations, a feature of
many legacy data sets. Although our emphasis is on aquatic
ecosystems, most of the functions should be useful for analysis
of similar-frequency time series regardless of the subject
matter.
Author: Alan D. Jassby and James E. Cloern
Maintainer: Alan Jassby
wq-0.3-5/wq/inst/doc/limnology_and_oceanography.bst |only
wq-0.3-5/wq/inst/doc/wq.bib |only
wq-0.3-5/wq/inst/doc/wqFlow.pdf |only
wq-0.3-6/wq/ChangeLog | 4 ++
wq-0.3-6/wq/DESCRIPTION | 8 ++---
wq-0.3-6/wq/MD5 | 27 ++++++++++----------
wq-0.3-6/wq/R/decompTs.R | 6 ++--
wq-0.3-6/wq/R/interpTs.R | 6 ++--
wq-0.3-6/wq/R/monthNum.R | 2 -
wq-0.3-6/wq/R/plotSeason.R | 2 -
wq-0.3-6/wq/R/seasonTrend.R | 2 -
wq-0.3-6/wq/R/tsSub.R | 4 +-
wq-0.3-6/wq/inst/doc/wq-package.pdf |binary
wq-0.3-6/wq/man/wq-package.Rd | 4 +-
wq-0.3-6/wq/vignettes |only
15 files changed, 35 insertions(+), 30 deletions(-)
Title: Structural geology tools
Diff between StructR versions 1.0 dated 2011-12-23 and 1.1 dated 2012-03-31
Description: Set of functions for the conversion, computation, and
visualization of geological data.
Author: Jeffrey R. Webber
Maintainer: Jeffrey R. Webber
StructR-1.0/StructR/R/Att3P.R |only
StructR-1.0/StructR/man/Att3P.Rd |only
StructR-1.1/StructR/DESCRIPTION | 14 ++++++++------
StructR-1.1/StructR/MD5 | 17 ++++++++---------
StructR-1.1/StructR/NAMESPACE |only
StructR-1.1/StructR/R/ElliRead.R | 2 +-
StructR-1.1/StructR/R/FryPLOT.R | 10 +++++-----
StructR-1.1/StructR/R/Nadai.R | 2 +-
StructR-1.1/StructR/man/Ellipse2D.Rd | 2 ++
StructR-1.1/StructR/man/FryPLOT.Rd | 5 ++++-
StructR-1.1/StructR/man/kmlDPP.Rd | 4 ----
11 files changed, 29 insertions(+), 27 deletions(-)
Title: OCI based Oracle database interface for R
Diff between ROracle versions 1.1-1 dated 2012-02-02 and 1.1-2 dated 2012-03-31
Description: Oracle database interface (DBI) driver for R. This is a
DBI-compliant Oracle driver based on the OCI.
Author: Denis Mukhin, David A. James and Jake Luciani
Maintainer: Denis Mukhin
DESCRIPTION | 8 -
MD5 | 12 +-
NEWS | 10 +
R/oci.R | 25 +---
inst/Copyrights | 2
man/dbConnect-methods.Rd | 24 ++++
src/roci.c | 250 ++++++++++++++++-------------------------------
7 files changed, 143 insertions(+), 188 deletions(-)
Title: Econometric tools for performance and risk analysis.
Diff between PerformanceAnalytics versions 1.0.3.2 dated 2010-09-15 and 1.0.4.4 dated 2012-03-31
More information about PerformanceAnalytics at CRAN
Description: Collection of econometric functions for performance and
risk analysis. This package aims to aid practitioners and
researchers in utilizing the latest research in analysis of
non-normal return streams. In general, it is most tested on
return (rather than price) data on a regular scale, but most
functions will work with irregular return data as well, and
increasing numbers of functions will work with P&L or price
data where possible.
Author: Peter Carl, Brian G. Peterson, Kris Boudt, Eric Zivot
Maintainer: Brian G. Peterson
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/data/edhec.csv |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/data/managers.csv |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/inst/doc/PA-techniques.tex |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/inst/doc/Rplots.ps |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/man/BetaCoMoments.Rd |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/man/CAPM.utils.Rd |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/man/CoMoments.Rd |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/man/PerformanceAnalytics-internal.Rd |only
PerformanceAnalytics-1.0.3.2/PerformanceAnalytics/man/mean.utils.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/.project | 1
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/.settings |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/ChangeLog | 8827 ----------
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/DESCRIPTION | 22
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/MD5 |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/NAMESPACE | 14
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/NEWS | 17
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/ActivePremium.R | 33
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/CAPM.alpha.R | 40
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/CAPM.beta.R | 71
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/CAPM.utils.R | 86
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/CalmarRatio.R | 52
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/CoMoments.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/DownsideDeviation.R | 140
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Drawdowns.R | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/ES.R | 125
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/HerfindahlIndex.R | 2
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/HurstIndex.R | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/InformationRatio.R | 36
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/KellyRatio.R | 45
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/MultivariateMoments.R | 7
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Omega.R | 77
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/PainIndex.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/PerformanceAnalytics-package.R |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/PortfolioRisk.R | 12
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.Geltner.R | 47
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.annualized.R | 43
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.calculate.R | 56
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.clean.R | 145
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.cumulative.R | 31
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.excess.R | 46
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.index.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.portfolio.R | 74
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.read.R | 48
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.relative.R | 25
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/Return.wealthindex.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/SemiDeviation.R | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/SharpeRatio.R | 121
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/SharpeRatio.annualized.R | 50
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/SmoothingIndex.R | 100
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/SortinoRatio.R | 61
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/StdDev.R | 84
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/StdDev.annualized.R | 59
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/TrackingError.R | 38
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/TreynorRatio.R | 36
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/UlcerIndex.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/UpDownRatios.R | 49
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/UpsidePotentialRatio.R | 88
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/VaR.Marginal.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/VaR.R | 135
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/apply.fromstart.R | 30
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/apply.rolling.R | 34
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.ACF.R | 38
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.ACFplus.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Bar.R | 39
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.BarVaR.R | 139
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Boxplot.R | 55
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.CaptureRatios.R | 53
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Correlation.R | 29
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.CumReturns.R | 63
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Drawdown.R | 39
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.ECDF.R | 47
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Events.R | 47
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Histogram.R | 104
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.QQPlot.R | 84
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Regression.R | 59
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RelativePerformance.R | 47
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RiskReturnScatter.R | 76
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RollingCorrelation.R | 34
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RollingMean.R | 31
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RollingPerformance.R | 35
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RollingQuantileRegression.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.RollingRegression.R | 64
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.Scatter.R | 45
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.SnailTrail.R | 63
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.StackedBar.R | 106
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.TimeSeries.R | 186
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/chart.VaRSensitivity.R | 53
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.Bar.R | 10
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.BarVaR.R | 93
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.PerformanceSummary.R | 58
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.RollingPerformance.R | 34
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.RollingRegression.R | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/charts.TimeSeries.R | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/checkData.R | 45
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/decomposeMVaR.R |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/expectedShortFallFunctions.r |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/findDrawdowns.R | 46
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/kurtosis.R | 44
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/legend.R | 88
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/maxDrawdown.R | 104
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/mean.utils.R | 33
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/na.skip.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/rCornishFisher.r |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/replaceTabs.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/skewness.R | 44
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/sortDrawdowns.R | 76
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.AnnualizedReturns.R | 34
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.Arbitrary.R | 77
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.Autocorrelation.R | 35
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.CAPM.R | 48
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.CalendarReturns.R | 40
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.CaptureRatios.R | 36
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.Correlation.R | 34
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.DownsideRisk.R | 40
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.Drawdowns.R | 46
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.HigherMoments.R | 41
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.MonthlyReturns.R | 35
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.RollingPeriods.R | 38
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/table.UpDownRatios.R | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/textplot.R | 95
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/valueAtRiskFunctions.r |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/zerofill.R | 17
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/R/zzz.R | 21
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/codeblock.txt | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/data/edhec.csv.gz |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/data/managers.csv.gz |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PA-charts.Rnw | 40
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PA-charts.pdf |binary
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PerformanceAnalyticsChartsPresentation-Meielisalp-2007.Rnw | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PerformanceAnalyticsChartsPresentation-Meielisalp-2007.pdf |binary
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PerformanceAnalyticsPresentation-UseR-2007.Rnw | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/PerformanceAnalyticsPresentation-UseR-2007.pdf |binary
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/textplotPresentation-CRUG-2011.Rnw |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/inst/doc/textplotPresentation-CRUG-2011.pdf |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/BetaCoVariance.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/CAPM.RiskPremium.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/CAPM.beta.Rd | 2
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/CoVariance.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/DownsideDeviation.Rd | 8
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/ES.Rd | 136
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/Omega.Rd | 2
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/Return.read.Rd | 12
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/SharpeRatio.Rd | 7
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/SortinoRatio.Rd | 4
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/StdDev.Rd | 21
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/StdDev.annualized.Rd | 7
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/VaR.Rd | 2
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/centeredmoments.Rd | 6
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/chart.BarVaR.Rd | 33
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/chart.CumReturns.Rd | 7
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/chart.TimeSeries.Rd | 54
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/charts.PerformanceSummary.Rd | 2
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/legend.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/mean.geometric.Rd |only
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/man/table.Drawdowns.Rd | 12
PerformanceAnalytics-1.0.4.4/PerformanceAnalytics/tests/Examples/PerformanceAnalytics-Ex.Rout.save | 7705 ++++----
156 files changed, 9076 insertions(+), 12927 deletions(-)
Permanent link
Title: A Replacement and Extension of the optim() Function
Diff between optimx versions 2011-8.2 dated 2012-02-20 and 2012-3.31 dated 2012-03-31
Description: Provides a replacement and extension of the optim()
function to unify and streamline optimization capabilities in R
for smooth, possibly box constrained functions of several or
many parameters
Author: John C Nash
Maintainer: John C Nash
DESCRIPTION | 11
MD5 | 6
R/optimx.R | 1938 +++++++++++++++++++++++++++++-----------------------------
man/optimx.Rd | 4
4 files changed, 980 insertions(+), 979 deletions(-)
Title: Tools for analysing OmniLog(R) Phenotype Microarray data
Diff between opm versions 0.2-1 dated 2012-03-09 and 0.3-3 dated 2012-03-31
Description: Tools for analysing OmniLog(R) Phenotype Microarray (PM)
data as produced by the device distributed by BiOLOG Inc.,
including plotting, aggregating (estimating curve parameters),
comparing and discretizing PM data, creating phylogenetic
formats and reports for taxonomic journals, integrating
metadata, using the YAML format for the storage of data and
metadata, and batch conversion of large numbers of files.
Author: Markus Goeker, with contributions by Lea Vaas, Johannes
Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker
opm-0.2-1/opm/inst/tests |only
opm-0.2-1/opm/tests |only
opm-0.3-3/opm/DESCRIPTION | 31 +-
opm-0.3-3/opm/MD5 | 130 +++++------
opm-0.3-3/opm/NAMESPACE | 18 +
opm-0.3-3/opm/NEWS | 37 +++
opm-0.3-3/opm/R/constants.R | 18 -
opm-0.3-3/opm/R/data.R | 21 +
opm-0.3-3/opm/R/helpers.R | 150 ++++++++++--
opm-0.3-3/opm/R/io.R | 115 +++++++--
opm-0.3-3/opm/R/list.R | 358 ++++++++++++++++++++++++-------
opm-0.3-3/opm/R/matrix.R | 24 ++
opm-0.3-3/opm/R/numeric.R | 344 +++++++++++++++++++++++++++++
opm-0.3-3/opm/R/opm.R | 51 ++--
opm-0.3-3/opm/R/opma.R | 23 +
opm-0.3-3/opm/R/opms.R | 53 ++++
opm-0.3-3/opm/R/phylo.R | 273 +++++++++++++++++------
opm-0.3-3/opm/R/testing.R | 39 +--
opm-0.3-3/opm/R/well-map.R | 4
opm-0.3-3/opm/man/MOA.Rd |only
opm-0.3-3/opm/man/OPM.Rd | 6
opm-0.3-3/opm/man/OPMA.Rd | 6
opm-0.3-3/opm/man/OPMS.Rd | 10
opm-0.3-3/opm/man/OPMX.Rd | 6
opm-0.3-3/opm/man/WMD.Rd | 6
opm-0.3-3/opm/man/YAML_VIA_LIST.Rd | 5
opm-0.3-3/opm/man/assert_length.Rd | 2
opm-0.3-3/opm/man/borders.Rd |only
opm-0.3-3/opm/man/calinski.Rd |only
opm-0.3-3/opm/man/collect_template.Rd | 6
opm-0.3-3/opm/man/discrete.Rd | 44 ++-
opm-0.3-3/opm/man/do_aggr.Rd | 28 +-
opm-0.3-3/opm/man/extract.Rd | 4
opm-0.3-3/opm/man/extract_columns.Rd | 5
opm-0.3-3/opm/man/flatten.Rd | 5
opm-0.3-3/opm/man/flattened_to_factor.Rd | 3
opm-0.3-3/opm/man/insert.Rd | 4
opm-0.3-3/opm/man/join_discrete.Rd | 13 -
opm-0.3-3/opm/man/level_plot.Rd | 24 +-
opm-0.3-3/opm/man/listing.Rd | 26 +-
opm-0.3-3/opm/man/map_gapmode.Rd |only
opm-0.3-3/opm/man/map_names.Rd | 37 ++-
opm-0.3-3/opm/man/map_values.Rd | 42 +++
opm-0.3-3/opm/man/map_well_names.Rd | 4
opm-0.3-3/opm/man/merge.Rd |only
opm-0.3-3/opm/man/must.Rd |only
opm-0.3-3/opm/man/oapply.Rd | 3
opm-0.3-3/opm/man/opm.package.Rd | 21 -
opm-0.3-3/opm/man/opms-function.Rd | 51 +++-
opm-0.3-3/opm/man/phylo_char_mat.Rd | 9
opm-0.3-3/opm/man/phylo_data.Rd | 102 ++++++--
opm-0.3-3/opm/man/plate_type.Rd | 10
opm-0.3-3/opm/man/plates.Rd | 3
opm-0.3-3/opm/man/prepare_class_names.Rd |only
opm-0.3-3/opm/man/read_opm.Rd | 31 +-
opm-0.3-3/opm/man/read_single_opm.Rd | 2
opm-0.3-3/opm/man/repair_oth.Rd |only
opm-0.3-3/opm/man/run_kmeans.Rd |only
opm-0.3-3/opm/man/safe_labels.Rd | 6
opm-0.3-3/opm/man/separate.Rd | 46 ++-
opm-0.3-3/opm/man/test_file_dir.Rd | 7
opm-0.3-3/opm/man/to_kmeans.Rd |only
opm-0.3-3/opm/man/to_opm_list.Rd | 6
opm-0.3-3/opm/man/to_yaml.Rd | 3
opm-0.3-3/opm/man/vaas_1.Rd | 11
opm-0.3-3/opm/man/vaas_4.Rd | 11
opm-0.3-3/opm/man/vaas_et_al.Rd | 11
opm-0.3-3/opm/man/xy_plot.Rd | 22 +
68 files changed, 1769 insertions(+), 561 deletions(-)
Title: memory-efficient storage of large data on disk and fast access
functions
Diff between ff versions 2.2-5 dated 2012-01-27 and 2.2-6 dated 2012-03-31
Description: The ff package provides data structures that are stored on
disk but behave (almost) as if they were in RAM by
transparently mapping only a section (pagesize) in main memory
- the effective virtual memory consumption per ff object. ff
supports R's standard atomic data types 'double', 'logical',
'raw' and 'integer' and non-standard atomic types boolean (1
bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1
byte signed with NAs), ubyte (1 byte unsigned), short (2 byte
signed with NAs), ushort (2 byte unsigned), single (4 byte
float with NAs). For example 'quad' allows efficient storage of
genomic data as an 'A','T','G','C' factor. The unsigned types
support 'circular' arithmetic. There is also support for
close-to-atomic types 'factor', 'ordered', 'POSIXct', 'Date'
and custom close-to-atomic types. ff not only has native
C-support for vectors, matrices and arrays with flexible
dimorder (major column-order, major row-order and
generalizations for arrays). There is also a ffdf class not
unlike data.frames and import/export filters for csv files. ff
objects store raw data in binary flat files in native encoding,
and complement this with metadata stored in R as physical and
virtual attributes. ff objects have well-defined hybrid copying
semantics, which gives rise to certain performance improvements
through virtualization. ff objects can be stored and reopened
across R sessions. ff files can be shared by multiple ff R
objects (using different data en/de-coding schemes) in the same
process or from multiple R processes to exploit parallelism. A
wide choice of finalizer options allows to work with
'permanent' files as well as creating/removing 'temporary' ff
files completely transparent to the user. On certain
OS/Filesystem combinations, creating the ff files works without
notable delay thanks to using sparse file allocation. Several
access optimization techniques such as Hybrid Index
Preprocessing and Virtualization are implemented to achieve
good performance even with large datasets, for example virtual
matrix transpose without touching a single byte on disk.
Further, to reduce disk I/O, 'logicals' and non-standard data
types get stored native and compact on binary flat files i.e.
logicals take up exactly 2 bits to represent TRUE, FALSE and
NA. Beyond basic access functions, the ff package also
provides compatibility functions that facilitate writing code
for ff and ram objects and support for batch processing on ff
objects (e.g. as.ram, as.ff, ffapply). ff interfaces closely
with functionality from package 'bit': chunked looping, fast
bit operations and coercions between different objects that can
store subscript information ('bit', 'bitwhich', ff 'boolean',
ri range index, hi hybrid index). This allows to work
interactively with selections of large datasets and quickly
modify selection criteria. Further high-performance
enhancements can be made available upon request.
Author: Daniel Adler
Maintainer: Jens Oehlschlägel
DESCRIPTION | 18 +++++++++---------
MD5 | 12 ++++++------
NEWS | 17 +++++++++++++++--
R/hi.R | 4 ++--
R/vmode.R | 16 ++++++++--------
man/unsort.rd | 4 ++--
src/ordermerge.c | 5 +++--
7 files changed, 45 insertions(+), 31 deletions(-)
Title: Diagnostic test summary measures for three ordinal groups
Diff between DiagTest3Grp versions 1.2 dated 2011-07-22 and 1.4 dated 2012-03-31
Description: The R package provides utilities to estimate and make
inference on two summary measures for diagnostic tests when
there are three ordinal groups ----volume under ROC surface
(VUS) and the extended Youden index, assuming that diagnostic
markers increase monotonically and stochastically with disease
severity. Point estimates, variance, confidence interval and
optimal cut-points both under the normal assumption and also
the non-parametric method(s) will be provided for the summary
measures. Statistical tests are implemented to compare multiple
diagnostic tests and two diagnostic test. Sample size is
calculated to estimate the summary measures within a
user-specified margin of error for future study planning.
Author: Jingqin Luo, Chengjie Xiong
Maintainer: Jingqin Luo
DESCRIPTION | 24 ++++++++++++------------
MD5 |only
R/DiagTest3Grp.Test.R | 8 ++++----
R/NonParametric.VUS.R | 4 ++--
R/NonParametric.VUS.var.R | 5 +++--
R/Normal.VUS.R | 30 ++++++++++++++++++++----------
R/SampleSize.VUS.R | 17 +++++++++++------
R/SampleSize.Youden3Grp.R | 11 +++++++++--
R/VUS.R | 10 +++++-----
R/Youden3Grp.PointEst.R | 14 +++++++++++---
R/Youden3Grp.R | 8 +++++---
R/Youden3Grp.boxcox.fit.R | 4 ++--
man/NonParametric.VUS.Rd | 5 +++--
man/NonParametric.VUS.var.Rd | 9 +++++----
man/Normal.VUS.Rd | 20 +++++++++++++++++---
man/SampleSize.VUS.Rd | 5 ++---
man/VUS.Rd | 3 ++-
man/Youden3Grp.PointEst.Rd | 3 ++-
man/Youden3Grp.Rd | 3 ++-
man/plot.DiagTest3Grp.Rd | 2 +-
man/print.DiagTest3Grp.Rd | 2 +-
21 files changed, 119 insertions(+), 68 deletions(-)
Title: Asymmetric Price Transmission (apt)
Diff between apt versions 1.0 dated 2011-02-05 and 1.1 dated 2012-03-31
Description: This package focuses on asymmetric price transmission
(APT) between two time series. This package contains functions
for linear and nonlinear threshold cointegration, and
furthermore, symmetric and asymmetric error correction model.
Author: Changyou Sun
Maintainer: Changyou Sun
apt-1.0/apt/inst/doc/CSbeds.pdf |only
apt-1.0/apt/inst/doc/Rplots.pdf |only
apt-1.0/apt/inst/doc/Sweave.sty |only
apt-1.0/apt/inst/doc/apten.bib |only
apt-1.1/apt/DESCRIPTION | 12 +++---
apt-1.1/apt/MD5 |only
apt-1.1/apt/NAMESPACE |only
apt-1.1/apt/R/ciTarFit.R | 6 +--
apt-1.1/apt/R/ecmAsyFit.R | 6 +--
apt-1.1/apt/R/ecmSymFit.R | 4 +-
apt-1.1/apt/inst/doc/apt-manual.pdf |binary
apt-1.1/apt/inst/doc/apt.Rnw | 62 ++++++++++++++++++++++++++++++++++--
apt-1.1/apt/inst/doc/apt.pdf |binary
apt-1.1/apt/man/apt-package.Rd | 8 ++--
apt-1.1/apt/vignettes |only
15 files changed, 77 insertions(+), 21 deletions(-)
Title: Estimation, Diagnostic and Forecasting Functions for ARFIMA
models
Diff between afmtools versions 0.1.5 dated 2012-03-20 and 0.1.6 dated 2012-03-31
Description: A collection of estimation, forecasting and diagnostic
tools for autoregressive fractionally integrated moving-average
process (ARFIMA).
Author: Javier Contreras-Reyes, Georg M. Goerg, Wilfredo Palma
Maintainer: Javier Contreras-Reyes
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/plot.arfima.R | 5 -----
R/rho.sowell.R | 32 ++++++++++++++------------------
man/afmtools-package.Rd | 2 +-
5 files changed, 23 insertions(+), 32 deletions(-)