Title: Formula-driven table generation
Diff between tables versions 0.5 dated 2011-12-07 and 0.6 dated 2012-04-02
Description: Computes and displays complex tables of summary statistics
Author: Duncan Murdoch
Maintainer: Duncan Murdoch
DESCRIPTION | 8 -
MD5 | 33 ++++--
NAMESPACE | 9 +
R/All.R | 8 +
R/RowFactor.R | 53 ++++++++---
R/latex.tabular.R | 10 +-
R/tabular.R | 53 +++++------
R/write.R |only
inst/NEWS | 25 +++++
inst/doc/tables.Rnw | 223 +++++++++++++++++++++++++++++++++++++++++------
inst/doc/tables.pdf |binary
man/All.Rd | 6 +
man/RowFactor.Rd | 45 ++++++++-
man/as.matrix.tabular.Rd |only
man/latex.tabular.Rd | 7 +
man/tabular.Rd | 39 ++++++--
man/write.csv.tabular.Rd |only
vignettes/tables.Rnw | 223 +++++++++++++++++++++++++++++++++++++++++------
vignettes/tables.bbl |only
vignettes/tables.blg |only
20 files changed, 601 insertions(+), 141 deletions(-)
Title: SciViews GUI API - Dialog boxes
Diff between svDialogs versions 0.9-43 dated 2010-09-27 and 0.9-50 dated 2012-04-02
Description: Rapidly construct dialog boxes for your GUI, including an
automatic function assistant
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
svDialogs-0.9-43/svDialogs/LICENSE |only
svDialogs-0.9-43/svDialogs/R/fixedDlg.R |only
svDialogs-0.9-43/svDialogs/man/guiDlgAssistant.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgColor.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgDir.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgDoubleList.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgFont.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgFormula.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgGraphOptions.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgGrid.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgInput.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgItemSel.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgList.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgMessage.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgOpen.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgOptions.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgProgress.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgSave.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgText.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgVarSel.Rd |only
svDialogs-0.9-43/svDialogs/man/guiDlgView.Rd |only
svDialogs-0.9-50/svDialogs/DESCRIPTION | 19 ++--
svDialogs-0.9-50/svDialogs/MD5 |only
svDialogs-0.9-50/svDialogs/NAMESPACE | 71 ++++++++++----
svDialogs-0.9-50/svDialogs/NEWS | 90 +++++++++++++++++++
svDialogs-0.9-50/svDialogs/R/dlgDir.R |only
svDialogs-0.9-50/svDialogs/R/dlgForm.R |only
svDialogs-0.9-50/svDialogs/R/dlgInput.R |only
svDialogs-0.9-50/svDialogs/R/dlgList.R |only
svDialogs-0.9-50/svDialogs/R/dlgMessage.R |only
svDialogs-0.9-50/svDialogs/R/dlgOpen.R |only
svDialogs-0.9-50/svDialogs/R/dlgSave.R |only
svDialogs-0.9-50/svDialogs/R/flexibleDlg.R | 29 ++----
svDialogs-0.9-50/svDialogs/R/guiDlg.R |only
svDialogs-0.9-50/svDialogs/R/menu.R |only
svDialogs-0.9-50/svDialogs/R/svDialogs-internal.R |only
svDialogs-0.9-50/svDialogs/TODO | 8 +
svDialogs-0.9-50/svDialogs/inst/CITATION | 12 +-
svDialogs-0.9-50/svDialogs/inst/LICENSE |only
svDialogs-0.9-50/svDialogs/inst/NEWS.Rd |only
svDialogs-0.9-50/svDialogs/inst/gui |only
svDialogs-0.9-50/svDialogs/man/dlgDir.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgForm.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgInput.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgList.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgMessage.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgOpen.Rd |only
svDialogs-0.9-50/svDialogs/man/dlgSave.Rd |only
svDialogs-0.9-50/svDialogs/man/guiDlgFunction.Rd | 2
svDialogs-0.9-50/svDialogs/man/menu.Rd |only
svDialogs-0.9-50/svDialogs/man/svDialogs-package.Rd | 18 +++
51 files changed, 193 insertions(+), 56 deletions(-)
Title: Pearson Distribution System
Diff between PearsonDS versions 0.92 dated 2010-04-25 and 0.93 dated 2012-04-02
Description: Implementation of the Pearson distribution system,
including full support for the (d,p,q,r)-family of functions
for probability distributions and fitting via method of moments
and maximum likelihood method.
Author: Martin Becker
Maintainer: Martin Becker
PearsonDS-0.92/PearsonDS/src/config.h |only
PearsonDS-0.93/PearsonDS/DESCRIPTION | 8 +++---
PearsonDS-0.93/PearsonDS/MD5 |only
PearsonDS-0.93/PearsonDS/R/pearsonIV.r | 38 ++++++++++++++++--------------
PearsonDS-0.93/PearsonDS/R/zzz.r | 15 ++++++-----
PearsonDS-0.93/PearsonDS/inst/CHANGES | 9 +++++++
PearsonDS-0.93/PearsonDS/man/PearsonDS.rd | 2 -
PearsonDS-0.93/PearsonDS/man/PearsonIV.rd | 2 -
8 files changed, 44 insertions(+), 30 deletions(-)
Title: Software for Bayesian Inference
Diff between LaplacesDemon versions 12.03.05 dated 2012-03-05 and 12.04.02 dated 2012-04-02
Description: Laplace's Demon is software for Bayesian inference.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 17
DESCRIPTION | 8
MD5 | 60 -
NAMESPACE | 1
R/Consort.R | 266 +++++--
R/IAT.R |only
R/LaplacesDemon.R | 604 ++++++++++++++--
R/OnLoad.R | 3
R/PosteriorChecks.R | 14
R/distributions.R | 38 -
R/plot.demonoid.R | 13
R/plot.demonoid.ppc.R | 6
R/plot.laplace.ppc.R | 6
R/summary.demonoid.ppc.R | 29
R/summary.laplace.ppc.R | 29
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 362 ++++++++-
inst/doc/Examples.pdf |binary
inst/doc/LaplacesDemonTutorial.Stex | 127 ++-
inst/doc/LaplacesDemonTutorial.pdf |binary
inst/doc/References.bib | 1325 ++++++++++++++++++------------------
man/Consort.Rd | 12
man/ESS.Rd | 11
man/HPD.Rd | 31
man/IAT.Rd |only
man/LML.Rd | 3
man/LaplaceApproximation.Rd | 4
man/LaplacesDemon-package.Rd | 4
man/LaplacesDemon.Rd | 220 +++--
man/PosteriorChecks.Rd | 20
man/SIR.Rd | 4
man/plot.demonoid.Rd | 6
32 files changed, 2114 insertions(+), 1109 deletions(-)
Title: An Asymmetry-Steepness Parameterization of the Generalized
Lambda Distribution.
Diff between gldist versions 2160.1 dated 2012-03-27 and 2160.2 dated 2012-04-02
Description: The generalized lambda distribution (GLD) is a versatile
distribution that can accommodate a wide range of shapes,
including fat-tailed and asymmetric distributions. This package
implements a more intuitive parameterization of the GLD that
expresses the location and scale parameters directly as the
median and inter-quartile range of the distribution. The
remaining two shape parameters characterize the asymmetry and
steepness of the distribution respectively. The fitting of the
GLD to empirical data can be reduced to a two-parameter
estimation problem where the location and scale parameters are
estimated by their robust sample estimators. Moreover, the
parameterization can be used to compare data sets in a
convenient asymmetry and steepness shape plot. The underline C
routines are written such that compilers that support
vectorized mathematical operations can automatically vectorize
the most time consuming loops (tested with icc 12.1.0). The
package includes the usual distribution functions, fitting
routines and a shape plot function.
Author: Yohan Chalabi and Diethelm Wuertz
Maintainer: Yohan Chalabi
ChangeLog | 24 +++++++++
DESCRIPTION | 10 +--
MD5 | 24 ++++-----
inst/unitTests/runit.dgl.R | 18 ++++++
inst/unitTests/runit.pgl.R | 14 +++++
inst/unitTests/runit.qdgl.R | 75 ++++++++++++++++++----------
inst/unitTests/runit.qgl.R | 14 +++++
inst/unitTests/runit.rgl.R | 14 +++++
src/dgl.c | 116 +++++++++++++++++---------------------------
src/pgl.c | 42 +++++----------
src/qdgl.c | 34 ++++++++++--
src/qgl.c | 42 +++++++++++----
src/rgl.c | 28 ++++------
13 files changed, 280 insertions(+), 175 deletions(-)
Title: Output analysis and diagnostics for MCMC
Diff between coda versions 0.14-6 dated 2011-11-04 and 0.14-7 dated 2012-04-02
Description: Output analysis and diagnostics for Markov Chain Monte
Carlo simulations.
Author: Martyn Plummer, Nicky Best, Kate Cowles, Karen Vines
Maintainer: Martyn Plummer
CHANGELOG | 11 +++++++++--
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
R/gelman.R | 4 ++--
data/line.rda |binary
man/gelman.diag.Rd | 6 +++++-
6 files changed, 26 insertions(+), 15 deletions(-)
Title: random cluster generation (with specified degree of separation)
Diff between clusterGeneration versions 1.2.8 dated 2012-03-20 and 1.2.9 dated 2012-04-02
More information about clusterGeneration at CRAN
Description: The package contains functions for generating random
clusters, generating random covariance/correlation matrices,
calculating a separation index (data and population version)
for pairs of clusters or cluster distributions, and 1-D and 2-D
projection plots to visualize clusters. The package also
contains a function to generate random clusters based on
factorial designs with factors such as degree of separation,
number of clusters, number of variables, number of noisy
variables.
Author: Weiliang Qiu
Maintainer: Weiliang Qiu
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/genCluster.R | 10 ++++++----
R/simClustDesign.R | 1 +
log.txt | 27 +++++++++++++++++++++++++++
5 files changed, 42 insertions(+), 12 deletions(-)
Permanent link
Title: arulesViz - Visualizing Association Rules and Frequent Itemsets
Diff between arulesViz versions 0.1-4 dated 2011-11-04 and 0.1-5 dated 2012-04-02
Description: Various visualization techniques for association rules and
itemsets. The packages also includes several interactive
visualizations for rule exploration. This package extends
package arules.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler
arulesViz-0.1-4/arulesViz/inst/doc/jss.bst |only
arulesViz-0.1-4/arulesViz/inst/doc/jss.cls |only
arulesViz-0.1-5/arulesViz/CHANGES | 3 ++
arulesViz-0.1-5/arulesViz/DESCRIPTION | 16 +++++++-----
arulesViz-0.1-5/arulesViz/MD5 | 22 +++++++----------
arulesViz-0.1-5/arulesViz/NAMESPACE | 1
arulesViz-0.1-5/arulesViz/R/graph.R | 3 --
arulesViz-0.1-5/arulesViz/R/groupedmatrix.R | 29 ++++++++++++++++-------
arulesViz-0.1-5/arulesViz/R/map.R | 4 +++
arulesViz-0.1-5/arulesViz/R/scatterplot.R | 27 ++++++++++++++-------
arulesViz-0.1-5/arulesViz/inst/doc/arulesViz.Rnw | 4 +--
arulesViz-0.1-5/arulesViz/inst/doc/arulesViz.pdf |binary
arulesViz-0.1-5/arulesViz/man/plot.Rd | 4 ++-
13 files changed, 73 insertions(+), 40 deletions(-)
Title: apsrtable model-output formatter for social science
Diff between apsrtable versions 0.8-6 dated 2011-03-01 and 0.8-8 dated 2012-04-02
Description: Formats latex tables from one or more model objects
side-by-side with standard errors below, not unlike tables
found in such journals as the American Political Science
Review.
Author: Michael Malecki
Maintainer: Michael Malecki
apsrtable-0.8-6/apsrtable/inst/doc/Makefile |only
apsrtable-0.8-6/apsrtable/inst/doc/guide-real.pdf |only
apsrtable-0.8-6/apsrtable/inst/doc/guide.Rnw.real |only
apsrtable-0.8-6/apsrtable/inst/doc/guide.tex |only
apsrtable-0.8-6/apsrtable/inst/doc/index.html |only
apsrtable-0.8-6/apsrtable/inst/doc/pt-table.png |only
apsrtable-0.8-6/apsrtable/inst/doc/pt.csv |only
apsrtable-0.8-6/apsrtable/inst/doc/tpm_v16_n2.pdf |only
apsrtable-0.8-8/apsrtable/.Rinstignore |only
apsrtable-0.8-8/apsrtable/DESCRIPTION | 10 -
apsrtable-0.8-8/apsrtable/MD5 |only
apsrtable-0.8-8/apsrtable/R/apsrtable.R | 211 +++++++++++++---------
apsrtable-0.8-8/apsrtable/apsrtable-Ex.R | 8
apsrtable-0.8-8/apsrtable/inst/doc/guide.pdf |binary
apsrtable-0.8-8/apsrtable/man/apsrtable.Rd | 13 -
apsrtable-0.8-8/apsrtable/man/modelInfo.Rd | 2
apsrtable-0.8-8/apsrtable/vignettes |only
17 files changed, 151 insertions(+), 93 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-10 1.0.3
2008-09-05 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-12 1.1
2005-06-08 1.0
Title: X12 - wrapper function and structure for batch processing
Diff between x12 versions 0.2-0 dated 2011-05-13 and 1.0-0 dated 2012-04-02
Description: A wrapper function and GUI for the X12 binaries
Author: Alexander Kowarik
Maintainer: Alexander Kowarik
x12-0.2-0/x12/R/1defmacro.R |only
x12-0.2-0/x12/R/PlotX12GUI.R |only
x12-0.2-0/x12/R/X12GUI.R |only
x12-0.2-0/x12/R/readFile.r |only
x12-0.2-0/x12/inst |only
x12-0.2-0/x12/man/PlotX12GUI.Rd |only
x12-0.2-0/x12/man/X12GUI.Rd |only
x12-1.0-0/x12/DESCRIPTION | 15
x12-1.0-0/x12/MD5 |only
x12-1.0-0/x12/NAMESPACE | 12
x12-1.0-0/x12/R/X12-methods.R |only
x12-1.0-0/x12/R/class.R |only
x12-1.0-0/x12/R/crossVal-methods.R |only
x12-1.0-0/x12/R/parameter-methods.R |only
x12-1.0-0/x12/R/plot-methods.R |only
x12-1.0-0/x12/R/plotFunctions.R |only
x12-1.0-0/x12/R/read.spc.R |only
x12-1.0-0/x12/R/summary-methods.R |only
x12-1.0-0/x12/R/summary.x12.R |only
x12-1.0-0/x12/R/x12.R | 1450 ++++++++++++++++++++-----
x12-1.0-0/x12/R/zzz.R | 21
x12-1.0-0/x12/data/AirPassengersX12.RData |binary
x12-1.0-0/x12/data/AirPassengersX12Batch.RData |only
x12-1.0-0/x12/man/AirPassengersX12.Rd | 779 ++++++++++++-
x12-1.0-0/x12/man/AirPassengersX12Batch.Rd |only
x12-1.0-0/x12/man/X12-methods.Rd |only
x12-1.0-0/x12/man/crossVal-methods.Rd |only
x12-1.0-0/x12/man/crossValidation-class.Rd |only
x12-1.0-0/x12/man/diagnostics-class.Rd |only
x12-1.0-0/x12/man/fbcast-class.Rd |only
x12-1.0-0/x12/man/getP-methods.Rd |only
x12-1.0-0/x12/man/loadP-methods.Rd |only
x12-1.0-0/x12/man/plot-methods.Rd |only
x12-1.0-0/x12/man/plot.x12.Rd | 20
x12-1.0-0/x12/man/plotFbcast-methods.Rd |only
x12-1.0-0/x12/man/plotRsdAcf-methods.Rd |only
x12-1.0-0/x12/man/plotSeasFac-methods.Rd |only
x12-1.0-0/x12/man/plotSpec-methods.Rd |only
x12-1.0-0/x12/man/prev-methods.Rd |only
x12-1.0-0/x12/man/print.x12.Rd | 4
x12-1.0-0/x12/man/read.spc.Rd |only
x12-1.0-0/x12/man/spectrum-class.Rd |only
x12-1.0-0/x12/man/summary.x12.Rd |only
x12-1.0-0/x12/man/x12.Rd | 196 ++-
x12-1.0-0/x12/man/x12BaseInfo-class.Rd |only
x12-1.0-0/x12/man/x12Batch-class.Rd |only
x12-1.0-0/x12/man/x12List-class.Rd |only
x12-1.0-0/x12/man/x12Output-class.Rd |only
x12-1.0-0/x12/man/x12Parameter-class.Rd |only
x12-1.0-0/x12/man/x12Single-class.Rd |only
50 files changed, 2112 insertions(+), 385 deletions(-)
Title: Quality speedy graphics compilation and caching with Sweave
Diff between pgfSweave versions 1.2.1 dated 2011-04-06 and 1.3.0 dated 2012-04-02
Description: pgfSweave provides a number of improvements to the speed
and quality of Sweave output including: (1) capabilities for
'caching' graphics generated with Sweave on top of the caching
mechanisms provided by cacheSweave, (2) an interface to the
tikzDevice package which provides graphics with consistent font
style, sizing and quality as the main document and (3)
highlighting of echo'd source code via the highlight package.
pgfSweave provides a new driver for Sweave (pgfSweaveDriver)
with new chunk options tikz, external, sanitize, highlight and
tidy on top of the cache option provided by cacheSweave.
Author: Cameron Bracken
Maintainer: Cameron Bracken
pgfSweave-1.2.1/pgfSweave/inst/doc |only
pgfSweave-1.2.1/pgfSweave/inst/misc/vignette-src/Sweave.sty |only
pgfSweave-1.2.1/pgfSweave/src |only
pgfSweave-1.3.0/pgfSweave/.Rinstignore |only
pgfSweave-1.3.0/pgfSweave/ChangeLog | 563 ++++++++++
pgfSweave-1.3.0/pgfSweave/DESCRIPTION | 12
pgfSweave-1.3.0/pgfSweave/MD5 |only
pgfSweave-1.3.0/pgfSweave/NAMESPACE | 16
pgfSweave-1.3.0/pgfSweave/NEWS | 19
pgfSweave-1.3.0/pgfSweave/R/cacheSweaveUnexportedFunctions.R | 2
pgfSweave-1.3.0/pgfSweave/R/pgfSweave.R | 111 +
pgfSweave-1.3.0/pgfSweave/R/pgfSweaveDriver.R | 210 ++-
pgfSweave-1.3.0/pgfSweave/R/utilities.R | 33
pgfSweave-1.3.0/pgfSweave/R/zzz.R | 37
pgfSweave-1.3.0/pgfSweave/README.md | 2
pgfSweave-1.3.0/pgfSweave/exec/install-script.R | 7
pgfSweave-1.3.0/pgfSweave/exec/pgfsweave | 1
pgfSweave-1.3.0/pgfSweave/exec/pgfsweave-script.R | 3
pgfSweave-1.3.0/pgfSweave/inst/example/Makefile | 9
pgfSweave-1.3.0/pgfSweave/inst/example/pgfSweave-example.Rnw | 2
pgfSweave-1.3.0/pgfSweave/inst/example/pgfSweave-latex-example.Rnw | 2
pgfSweave-1.3.0/pgfSweave/inst/example/pgfSweave-xelatex-example.Rnw | 48
pgfSweave-1.3.0/pgfSweave/inst/misc/vignette-src/Makefile | 25
pgfSweave-1.3.0/pgfSweave/inst/misc/vignette-src/fig-pgfSweave-hist.eps |only
pgfSweave-1.3.0/pgfSweave/inst/misc/vignette-src/fig-pgfSweave-hist.pgf |only
pgfSweave-1.3.0/pgfSweave/inst/misc/vignette-src/fig-pgfSweave-tikz-hist.tikz |only
pgfSweave-1.3.0/pgfSweave/inst/misc/vignette-src/pgfSweave-vignette-source.Rnw | 14
pgfSweave-1.3.0/pgfSweave/inst/vignettes |only
pgfSweave-1.3.0/pgfSweave/man/pgfSweave.Rd | 178 +--
pgfSweave-1.3.0/pgfSweave/man/pgfSweaveDriver.Rd | 170 +--
30 files changed, 1184 insertions(+), 280 deletions(-)
Title: GD device for creating bitmap graphics as jpeg, png or gif files
using gd library
Diff between GDD versions 0.1-13 dated 2008-10-19 and 0.1-13.1 dated 2012-04-02
Description: Platform and X11 independent device for creating bitmaps
(png, gif and jpeg).
Author: Simon Urbanek
Maintainer: Simon Urbanek
GDD-0.1-13.1/GDD/DESCRIPTION | 16 +++++++++++-----
GDD-0.1-13.1/GDD/MD5 |only
GDD-0.1-13.1/GDD/NAMESPACE |only
GDD-0.1-13.1/GDD/inst/fonts/basefont.mapping | 12 ++++++------
GDD-0.1-13.1/GDD/inst/fonts/blue_highway_free.ttf |only
GDD-0.1-13.1/GDD/src/GDDtalk.c | 4 ++--
GDD-0.1-13/GDD/inst/fonts/blue highway free.ttf |only
7 files changed, 19 insertions(+), 13 deletions(-)
Title: Analysis of Spatially Distributed Data
Diff between RSurvey versions 0.6-8 dated 2011-12-28 and 0.7-0 dated 2012-04-02
Description: This package is a processing program for spatially
distributed data. It features graphing tools, query building,
and polygon clipping. A graphical user interface is provided.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher
DESCRIPTION | 22 ++---
LICENSE |only
MD5 | 29 +++----
R/BuildPackage.R | 3
R/ChoosePalette.R | 210 ++++++++++++++++++++++++++++++++++++++-------------
R/Data.R | 4
R/LoadPackages.R | 52 ++++++++----
R/ManagePolygons.R | 2
R/OpenRSurvey.R | 2
R/Plot2d.R | 3
R/RestoreSession.R | 7 -
R/WriteFile.R | 9 --
README.md | 25 ++----
data/project.rda |binary
man/ChoosePalette.Rd | 6 -
man/LoadPackages.Rd | 4
16 files changed, 250 insertions(+), 128 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.40-2 dated 2012-01-12 and 0.41-1 dated 2012-04-02
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
pomp-0.40-2/pomp/inst/data-R/euler.sir.R |only
pomp-0.40-2/pomp/inst/data-R/gillespie.sir.R |only
pomp-0.41-1/pomp/.Rinstignore |only
pomp-0.41-1/pomp/DESCRIPTION | 13
pomp-0.41-1/pomp/MD5 | 269 +++++-----
pomp-0.41-1/pomp/NAMESPACE | 10
pomp-0.41-1/pomp/R/bsmc.R | 181 +++++--
pomp-0.41-1/pomp/R/eulermultinom.R | 3
pomp-0.41-1/pomp/R/init-state-pomp.R | 8
pomp-0.41-1/pomp/R/mif-class.R | 1
pomp-0.41-1/pomp/R/mif-methods.R | 10
pomp-0.41-1/pomp/R/mif.R | 171 +++++-
pomp-0.41-1/pomp/R/nlf-objfun.R | 38 -
pomp-0.41-1/pomp/R/nlf.R | 71 +-
pomp-0.41-1/pomp/R/parmat.R | 5
pomp-0.41-1/pomp/R/pfilter.R | 30 -
pomp-0.41-1/pomp/R/pmcmc.R | 61 +-
pomp-0.41-1/pomp/R/pomp-fun.R | 19
pomp-0.41-1/pomp/R/pomp-methods.R | 110 +---
pomp-0.41-1/pomp/R/pomp.R | 68 +-
pomp-0.41-1/pomp/R/probe-match.R | 332 ++++++-------
pomp-0.41-1/pomp/R/probe.R | 4
pomp-0.41-1/pomp/R/sannbox.R | 26 -
pomp-0.41-1/pomp/R/simulate-pomp.R | 56 ++
pomp-0.41-1/pomp/R/traj-match.R | 146 +++--
pomp-0.41-1/pomp/R/trajectory-pomp.R | 29 -
pomp-0.41-1/pomp/R/version.R | 10
pomp-0.41-1/pomp/data/LondonYorke.rda |binary
pomp-0.41-1/pomp/data/bbs.rda |only
pomp-0.41-1/pomp/data/blowflies.rda |binary
pomp-0.41-1/pomp/data/dacca.rda |binary
pomp-0.41-1/pomp/data/euler.sir.rda |binary
pomp-0.41-1/pomp/data/gillespie.sir.rda |binary
pomp-0.41-1/pomp/data/gompertz.rda |binary
pomp-0.41-1/pomp/data/ou2.rda |binary
pomp-0.41-1/pomp/data/ricker.rda |binary
pomp-0.41-1/pomp/data/rw2.rda |binary
pomp-0.41-1/pomp/data/verhulst.rda |binary
pomp-0.41-1/pomp/inst/ChangeLog | 212 ++++++++
pomp-0.41-1/pomp/inst/NEWS | 74 ++
pomp-0.41-1/pomp/inst/TODO | 34 -
pomp-0.41-1/pomp/inst/data-R/dacca.R | 78 ---
pomp-0.41-1/pomp/inst/data-R/gompertz.R | 12
pomp-0.41-1/pomp/inst/data-R/ricker.R | 16
pomp-0.41-1/pomp/inst/data-R/sir.R |only
pomp-0.41-1/pomp/inst/doc/Makefile | 18
pomp-0.41-1/pomp/inst/doc/advanced_topics_in_pomp.Rnw | 36 -
pomp-0.41-1/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary
pomp-0.41-1/pomp/inst/doc/bsmc-ricker-flat-prior.rda |only
pomp-0.41-1/pomp/inst/doc/gompertz-multi-mif.rda |binary
pomp-0.41-1/pomp/inst/doc/gompertz-trajmatch.rda |binary
pomp-0.41-1/pomp/inst/doc/intro_to_pomp.Rnw | 459 ++++++++----------
pomp-0.41-1/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.41-1/pomp/inst/doc/manual.pdf |binary
pomp-0.41-1/pomp/inst/doc/nlf-block-boot.rda |binary
pomp-0.41-1/pomp/inst/doc/nlf-boot.rda |binary
pomp-0.41-1/pomp/inst/doc/nlf-fit-from-truth.rda |binary
pomp-0.41-1/pomp/inst/doc/nlf-fits.rda |binary
pomp-0.41-1/pomp/inst/doc/nlf-lag-tests.rda |binary
pomp-0.41-1/pomp/inst/doc/nlf-multi-short.rda |binary
pomp-0.41-1/pomp/inst/doc/ricker-mif.rda |binary
pomp-0.41-1/pomp/inst/doc/ricker-probe-match.rda |binary
pomp-0.41-1/pomp/inst/examples/gompertz.R | 36 -
pomp-0.41-1/pomp/inst/examples/gompertz.c | 22
pomp-0.41-1/pomp/inst/examples/sir.R | 68 +-
pomp-0.41-1/pomp/inst/examples/sir.c | 179 ++-----
pomp-0.41-1/pomp/inst/include/pomp.h | 50 +
pomp-0.41-1/pomp/man/blowflies.Rd | 35 +
pomp-0.41-1/pomp/man/bsmc.Rd | 25
pomp-0.41-1/pomp/man/dacca.Rd | 4
pomp-0.41-1/pomp/man/eulermultinom.Rd | 52 +-
pomp-0.41-1/pomp/man/mif-class.Rd | 3
pomp-0.41-1/pomp/man/mif.Rd | 59 +-
pomp-0.41-1/pomp/man/nlf.Rd | 11
pomp-0.41-1/pomp/man/parmat.Rd | 4
pomp-0.41-1/pomp/man/pfilter.Rd | 4
pomp-0.41-1/pomp/man/pmcmc.Rd | 12
pomp-0.41-1/pomp/man/pomp-class.Rd | 5
pomp-0.41-1/pomp/man/pomp-methods.Rd | 28 -
pomp-0.41-1/pomp/man/probe.Rd | 59 +-
pomp-0.41-1/pomp/man/ricker.Rd | 4
pomp-0.41-1/pomp/man/sannbox.Rd |only
pomp-0.41-1/pomp/man/simulate-pomp.Rd | 6
pomp-0.41-1/pomp/man/sir.Rd | 27 -
pomp-0.41-1/pomp/man/slice-design.Rd | 2
pomp-0.41-1/pomp/man/traj-match.Rd | 69 ++
pomp-0.41-1/pomp/man/trajectory-pomp.Rd | 7
pomp-0.41-1/pomp/src/cholmodel.c | 72 +-
pomp-0.41-1/pomp/src/dmeasure.c | 55 +-
pomp-0.41-1/pomp/src/dprocess.c | 92 ++-
pomp-0.41-1/pomp/src/euler.c | 5
pomp-0.41-1/pomp/src/eulermultinom.c | 41 +
pomp-0.41-1/pomp/src/gompertz.c | 23
pomp-0.41-1/pomp/src/initstate.c | 1
pomp-0.41-1/pomp/src/lookup_table.c | 6
pomp-0.41-1/pomp/src/partrans.c |only
pomp-0.41-1/pomp/src/pomp.h | 50 +
pomp-0.41-1/pomp/src/pomp_internal.h | 89 +++
pomp-0.41-1/pomp/src/ricker.c | 23
pomp-0.41-1/pomp/src/rmeasure.c | 70 +-
pomp-0.41-1/pomp/src/rprocess.c | 67 ++
pomp-0.41-1/pomp/src/simulate.c | 1
pomp-0.41-1/pomp/src/sir.c | 305 +++--------
pomp-0.41-1/pomp/src/skeleton.c | 135 +++--
pomp-0.41-1/pomp/tests/dacca.R |only
pomp-0.41-1/pomp/tests/dacca.Rout.save |only
pomp-0.41-1/pomp/tests/dimchecks.R |only
pomp-0.41-1/pomp/tests/dimchecks.Rout.save |only
pomp-0.41-1/pomp/tests/gillespie.R | 36 -
pomp-0.41-1/pomp/tests/gillespie.Rout.save | 52 +-
pomp-0.41-1/pomp/tests/gompertz.R | 9
pomp-0.41-1/pomp/tests/gompertz.Rout.save | 49 +
pomp-0.41-1/pomp/tests/logistic.R | 6
pomp-0.41-1/pomp/tests/logistic.Rout.save | 10
pomp-0.41-1/pomp/tests/ou2-bsmc.R | 6
pomp-0.41-1/pomp/tests/ou2-bsmc.Rout.save | 18
pomp-0.41-1/pomp/tests/ou2-mif-fp.R |only
pomp-0.41-1/pomp/tests/ou2-mif-fp.Rout.save |only
pomp-0.41-1/pomp/tests/ou2-mif.R | 1
pomp-0.41-1/pomp/tests/ou2-mif.Rout.save | 5
pomp-0.41-1/pomp/tests/ou2-pmcmc.R | 12
pomp-0.41-1/pomp/tests/ou2-procmeas.R | 16
pomp-0.41-1/pomp/tests/ou2-procmeas.Rout.save | 20
pomp-0.41-1/pomp/tests/ou2-trajmatch.R | 16
pomp-0.41-1/pomp/tests/ou2-trajmatch.Rout.save | 253 +--------
pomp-0.41-1/pomp/tests/partrans.R |only
pomp-0.41-1/pomp/tests/partrans.Rout.save |only
pomp-0.41-1/pomp/tests/pfilter.R | 7
pomp-0.41-1/pomp/tests/pfilter.Rout.save | 19
pomp-0.41-1/pomp/tests/pomppomp.R | 2
pomp-0.41-1/pomp/tests/pomppomp.Rout.save | 6
pomp-0.41-1/pomp/tests/ricker-bsmc.R |only
pomp-0.41-1/pomp/tests/ricker-bsmc.Rout.save |only
pomp-0.41-1/pomp/tests/ricker-probe.R | 48 -
pomp-0.41-1/pomp/tests/ricker-probe.Rout.save | 135 ++---
pomp-0.41-1/pomp/tests/ricker-spect.R | 2
pomp-0.41-1/pomp/tests/ricker-spect.Rout.save | 22
pomp-0.41-1/pomp/tests/ricker.R | 106 +---
pomp-0.41-1/pomp/tests/ricker.Rout.save | 270 ++--------
pomp-0.41-1/pomp/tests/rw2.Rout.save | 18
pomp-0.41-1/pomp/tests/sir.Rout.save | 24
pomp-0.41-1/pomp/tests/skeleton.R | 2
pomp-0.41-1/pomp/tests/skeleton.Rout.save | 6
pomp-0.41-1/pomp/tests/steps.R | 3
pomp-0.41-1/pomp/tests/steps.Rout.save | 7
145 files changed, 3108 insertions(+), 2494 deletions(-)
Title: Functions for optimal matching
Diff between optmatch versions 0.7-1 dated 2011-03-06 and 0.7-3 dated 2012-04-02
Description: Functions for optimal matching, including full matching
Author: Ben B. Hansen
Maintainer: Ben B. Hansen
optmatch-0.7-1/optmatch/ToDo |only
optmatch-0.7-1/optmatch/data/plantdist.R |only
optmatch-0.7-3/optmatch/.gitignore |only
optmatch-0.7-3/optmatch/ChangeLog | 14
optmatch-0.7-3/optmatch/DESCRIPTION | 10
optmatch-0.7-3/optmatch/MD5 |only
optmatch-0.7-3/optmatch/R/mdist.R | 10
optmatch-0.7-3/optmatch/R/moremethods.optmatch.R | 5
optmatch-0.7-3/optmatch/R/print.optmatch.R | 27
optmatch-0.7-3/optmatch/R/pscore.dist.R | 3
optmatch-0.7-3/optmatch/R/zzz.R | 50
optmatch-0.7-3/optmatch/data/plantdist.rda |only
optmatch-0.7-3/optmatch/man/mdist.Rd | 9
optmatch-0.7-3/optmatch/man/pscore.dist.Rd | 23
optmatch-0.7-3/optmatch/optmatch_0.7-2.tar.gz |only
optmatch-0.7-3/optmatch/optmatch_0.7-3.tar.gz |only
optmatch-0.7-3/optmatch/src/relax4s.f | 910 +++++-----
optmatch-0.7-3/optmatch/tests/fullmatch-helpers.Rout.save | 18
optmatch-0.7-3/optmatch/tests/fullmatch.Rout.save | 21
optmatch-0.7-3/optmatch/tests/mahal-dist.Rout.save | 21
optmatch-0.7-3/optmatch/tests/maxcontrolscap-tests.Rout.save | 21
optmatch-0.7-3/optmatch/tests/mdist.R | 2
optmatch-0.7-3/optmatch/tests/moremethods.optmatch-tests.R | 4
optmatch-0.7-3/optmatch/tests/moremethods.optmatch-tests.Rout.save | 107 +
optmatch-0.7-3/optmatch/tests/pairmatch-tests.Rout.save | 21
optmatch-0.7-3/optmatch/tests/pscore-dist.Rout.save | 21
optmatch-0.7-3/optmatch/tests/stratumStructure-tests.Rout.save | 21
optmatch-0.7-3/optmatch/tests/summary.optmatch-tests.Rout.save | 23
28 files changed, 700 insertions(+), 641 deletions(-)
Title: Format R Code Automatically
Diff between formatR versions 0.3-4 dated 2011-11-21 and 0.4 dated 2012-04-02
Description: This package provides a function tidy.source() and
optionally a GUI (by gWidgets and preferably gWidgetsRGtk2) to
format R source code. Spaces and indent will be added to the
code automatically, and comments will be preserved under
certain conditions, so that R code will be more human-readable
and tidy.
Author: Yihui Xie
Maintainer: Yihui Xie
formatR-0.3-4/formatR/vignettes |only
formatR-0.4/formatR/.Rinstignore |only
formatR-0.4/formatR/DESCRIPTION | 22
formatR-0.4/formatR/MD5 | 40 -
formatR-0.4/formatR/NAMESPACE | 2
formatR-0.4/formatR/NEWS | 31 +
formatR-0.4/formatR/R/GUI.R | 348 ++++++-------
formatR-0.4/formatR/R/eval.R | 69 +-
formatR-0.4/formatR/R/tidy.R | 681 ++++++++++++---------------
formatR-0.4/formatR/R/usage.R | 95 +--
formatR-0.4/formatR/R/zzz.R | 6
formatR-0.4/formatR/inst/doc/.install_extras |only
formatR-0.4/formatR/inst/doc/Makefile |only
formatR-0.4/formatR/inst/doc/formatR.Rnw | 638 ++-----------------------
formatR-0.4/formatR/inst/doc/formatR.bib | 34 -
formatR-0.4/formatR/inst/doc/formatR.lyx | 50 +
formatR-0.4/formatR/inst/doc/formatR.pdf |binary
formatR-0.4/formatR/man/parse.tidy.Rd | 8
formatR-0.4/formatR/man/tidy.dir.Rd | 3
formatR-0.4/formatR/man/tidy.eval.Rd | 7
formatR-0.4/formatR/man/tidy.gui.Rd | 24
formatR-0.4/formatR/man/tidy.source.Rd | 105 ----
formatR-0.4/formatR/man/unmask.source.Rd | 5
23 files changed, 781 insertions(+), 1387 deletions(-)
Title: Forecasting functions for time series and linear models
Diff between forecast versions 3.19 dated 2012-02-22 and 3.20 dated 2012-04-02
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/DM.R | 8 ++++----
R/lm.R | 18 +++++++++++++-----
5 files changed, 30 insertions(+), 17 deletions(-)
Title: Parsing and evaluation tools that provide more details than the
default.
Diff between evaluate versions 0.4.1 dated 2012-01-03 and 0.4.1.1 dated 2012-04-02
Description: Parsing and evaluation tools that make it easy to recreate
the command line behaviour of R.
Author: Hadley Wickham
Maintainer: Hadley Wickham
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
R/eval.r | 3 ++-
R/parse.r | 2 +-
4 files changed, 11 insertions(+), 10 deletions(-)
Title: Collection of methods to detect dichotomous differential item
functioning (DIF) in psychometrics
Diff between difR versions 4.1 dated 2011-06-22 and 4.2 dated 2012-04-02
Description: The difR package contains several traditional methods to
detect DIF in dichotomously scored items. Both uniform and
non-uniform DIF effects can be detected, with methods relying
upon item response models or not. Some methods deal with more
than one focal group.
Author: David Magis (U Liege), Sebastien Beland (UQAM) and Gilles
Raiche (UQAM)
Maintainer: David Magis
difR-4.1/difR/data/verbal.txt |only
difR-4.1/difR/inst/doc/Rd2.pdf |only
difR-4.2/difR/DESCRIPTION | 8 -
difR-4.2/difR/MD5 |only
difR-4.2/difR/NAMESPACE |only
difR-4.2/difR/NEWS | 36 ++++++++
difR-4.2/difR/R/RajuZ.r | 25 +++--
difR-4.2/difR/R/dichoDif.r | 28 +++---
difR-4.2/difR/R/difBD.r | 2
difR-4.2/difR/R/difGMH.r | 2
difR-4.2/difR/R/difGenLogistic.R | 2
difR-4.2/difR/R/difGenLord.r | 2
difR-4.2/difR/R/difLRT.r | 2
difR-4.2/difR/R/difLogistic.r | 2
difR-4.2/difR/R/difLord.r | 2
difR-4.2/difR/R/difMH.r | 142 ++++++++++++++++++++++++++-------
difR-4.2/difR/R/difRaju.r | 20 ++--
difR-4.2/difR/R/difStd.r | 2
difR-4.2/difR/R/difTID.r | 2
difR-4.2/difR/R/mantelHaenszel.R | 20 +++-
difR-4.2/difR/R/selectDif.r | 8 -
difR-4.2/difR/TODO | 13 +++
difR-4.2/difR/data/verbal.txt.gz |only
difR-4.2/difR/inst/CITATION | 4
difR-4.2/difR/inst/doc/difR-manual.pdf |only
difR-4.2/difR/man/RajuZ.rd | 27 +++++-
difR-4.2/difR/man/dichoDif.rd | 41 ++++++---
difR-4.2/difR/man/difMH.rd | 39 ++++++---
difR-4.2/difR/man/difR-package.Rd | 4
difR-4.2/difR/man/difRaju.rd | 35 ++++++--
difR-4.2/difR/man/mantelHaenszel.rd | 85 ++++++++++++-------
difR-4.2/difR/man/selectDif.rd | 26 ++++--
32 files changed, 424 insertions(+), 155 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-02-23 1.1.1
2007-02-28 1.1