Sat, 07 Apr 2012

Package rgr updated to version 1.1.5 with previous version 1.1.4 dated 2012-03-23

Title: The GSC Applied Geochemistry EDA Package
Description: Geological Survey of Canada (GSC) R functions for exploratory data analysis with applied geochemical data, with special application to the estimation of background ranges and identification of outliers, 'anomalies', to support both environmental studies and mineral exploration.
Author: Robert G. Garrett
Maintainer: Robert G. Garrett

Diff between rgr versions 1.1.4 dated 2012-03-23 and 1.1.5 dated 2012-04-07

 rgr-1.1.4/rgr/inst/doc/What_is_in_rgr_1-1-4.pdf |only
 rgr-1.1.4/rgr/inst/doc/rgr_Overview_1-1-4.pdf   |only
 rgr-1.1.4/rgr/inst/doc/rgr_func_list_1-1-4.pdf  |only
 rgr-1.1.4/rgr/man/rgr_1.1.4-package.Rd          |only
 rgr-1.1.5/rgr/DESCRIPTION                       |    6 ++--
 rgr-1.1.5/rgr/MD5                               |   32 +++++++++++++++---------
 rgr-1.1.5/rgr/NAMESPACE                         |    2 -
 rgr-1.1.5/rgr/R/ad.plot1.R                      |only
 rgr-1.1.5/rgr/R/ad.plot2.R                      |only
 rgr-1.1.5/rgr/R/crm.plot.R                      |only
 rgr-1.1.5/rgr/data/ad.test.rda                  |only
 rgr-1.1.5/rgr/data/crm.test.rda                 |only
 rgr-1.1.5/rgr/inst/doc/What_is_in_rgr_1-1-5.pdf |only
 rgr-1.1.5/rgr/inst/doc/rgr_Overview_1-1-5.pdf   |only
 rgr-1.1.5/rgr/inst/doc/rgr_func_list_1-1-5.pdf  |only
 rgr-1.1.5/rgr/man/ad.plot1.Rd                   |only
 rgr-1.1.5/rgr/man/ad.plot2.Rd                   |only
 rgr-1.1.5/rgr/man/ad.test.Rd                    |only
 rgr-1.1.5/rgr/man/anova2.Rd                     |    4 +--
 rgr-1.1.5/rgr/man/crm.plot.Rd                   |only
 rgr-1.1.5/rgr/man/crm.test.Rd                   |only
 rgr-1.1.5/rgr/man/rgr_1.1.5-package.Rd          |only
 rgr-1.1.5/rgr/man/thplot1.Rd                    |    3 +-
 rgr-1.1.5/rgr/man/thplot2.Rd                    |    2 +
 rgr-1.1.5/rgr/man/triples.test1.Rd              |    6 ++--
 rgr-1.1.5/rgr/man/triples.test2.Rd              |    6 ++--
 26 files changed, 37 insertions(+), 24 deletions(-)

More information about rgr at CRAN
Permanent link

Package gooJSON updated to version 1.0.01 with previous version 1.0 dated 2011-01-30

Title: Google JSON Data Interpreter for R
Description: A suite of helper functions for obtaining data from the Google Maps API JSON objects. Calls Google Maps API and returns results as an R data frame.
Author: Christopher Steven Marcum
Maintainer:

Diff between gooJSON versions 1.0 dated 2011-01-30 and 1.0.01 dated 2012-04-07

 ChangeLog     |only
 DESCRIPTION   |    8 ++++----
 MD5           |only
 NAMESPACE     |only
 R/gooadd.R    |    2 +-
 R/goomap.R    |   18 +++++++++---------
 R/zzz.R       |only
 man/gooadd.Rd |    4 ++--
 man/goomap.Rd |   12 ++++++------
 9 files changed, 22 insertions(+), 22 deletions(-)

More information about gooJSON at CRAN
Permanent link

Package informR updated to version 1.0.04 with previous version 1.0.03 dated 2011-12-22

Title: R Tools for Creating Sequence Statistics
Description: Tools for creating sequence statistics, especially for Butts's egocentric relational event model fitting software in the relevent R package
Author: Christopher Steven Marcum
Maintainer: Christopher Steven Marcum

Diff between informR versions 1.0.03 dated 2011-12-22 and 1.0.04 dated 2012-04-07

 ChangeLog          |    7 +++++++
 DESCRIPTION        |   16 +++++++++-------
 MD5                |   11 ++++++-----
 NAMESPACE          |only
 R/zzz.R            |   17 ++++++++++++-----
 data/atus80int.rda |binary
 data/atus80ord.rda |binary
 7 files changed, 34 insertions(+), 17 deletions(-)

More information about informR at CRAN
Permanent link

Package fortunes updated to version 1.5-0 with previous version 1.4-2 dated 2011-07-05

Title: R Fortunes
Description: R Fortunes
Author: Achim Zeileis (R code) and the R community (fortunes). Contributions (fortunes and/or code) by Torsten Hothorn, Peter Dalgaard, Uwe Ligges, Kevin Wright, Martin Maechler, Kjetil Brinchmann Halvorsen, Kurt Hornik, Duncan Murdoch, Andy Bunn, Ray Brownrigg, Roger Bivand, Spencer Graves, Jim Lemon, Christian Kleiber, David L. Reiner, Berton Gunter, Roger Koenker, Charles Berry, Marc Schwartz, Michael Dewey, Ben Bolker, Peter Dunn, Sarah Goslee, Simon Blomberg, Bill Venables, Roland Rau, Thomas Petzoldt, Rolf Turner, Mark Leeds, Emmanuel Charpentier, Chris Evans, Paolo Sonego, Peter Ehlers, Detlef Steuer, Tal Galili, Greg Snow, Brian D. Ripley, Michael Sumner, David Winsemius, Liviu Andronic, Brian Diggs, Matthieu Stigler, Michael Friendly, Dirk Eddelbuettel, Richard M. Heiberger, Patrick Burns, Dieter Menne, Andrie de Vries, Barry Rowlingson, Renaud Lancelot, R. Michael Weylandt, Jon Olav Skoien, Francois Morneau.
Maintainer: Achim Zeileis

Diff between fortunes versions 1.4-2 dated 2011-07-05 and 1.5-0 dated 2012-04-07

 fortunes-1.4-2/fortunes/COPYING                    |only
 fortunes-1.4-2/fortunes/COPYRIGHTS                 |only
 fortunes-1.5-0/fortunes/DESCRIPTION                |   14 +++---
 fortunes-1.5-0/fortunes/MD5                        |only
 fortunes-1.5-0/fortunes/R/fortunes.R               |   28 ++++++-------
 fortunes-1.5-0/fortunes/inst/doc/fortunes.pdf      |binary
 fortunes-1.5-0/fortunes/inst/fortunes/fortunes.csv |   43 ++++++++++++++++-----
 fortunes-1.5-0/fortunes/man/fortunes.Rd            |   14 ++++--
 8 files changed, 64 insertions(+), 35 deletions(-)

More information about fortunes at CRAN
Permanent link

Package PairedData updated to version 0.9.1 with previous version 0.5 dated 2011-12-15

Title: Paired Data Analysis
Description: This package provides a set of graphics (based on ggplot2), statistics, effect sizes and hypothesis tests for analysing paired data with S4 class.
Author: Stephane Champely
Maintainer: Stephane Champely

Diff between PairedData versions 0.5 dated 2011-12-15 and 0.9.1 dated 2012-04-07

 PairedData-0.5/PairedData/R/PairedData.R                |only
 PairedData-0.5/PairedData/inst                          |only
 PairedData-0.5/PairedData/man/paired.effect.size.Rd     |only
 PairedData-0.5/PairedData/man/paired.summary.Rd         |only
 PairedData-0.5/PairedData/man/plotCor.Rd                |only
 PairedData-0.5/PairedData/man/wincor.Rd                 |only
 PairedData-0.5/PairedData/man/winval.Rd                 |only
 PairedData-0.5/PairedData/man/winvar.Rd                 |only
 PairedData-0.5/PairedData/man/yuen1.test.Rd             |only
 PairedData-0.5/PairedData/man/yuenp.test.Rd             |only
 PairedData-0.9.1/PairedData/DESCRIPTION                 |   18 ++--
 PairedData-0.9.1/PairedData/MD5                         |   60 +++++++-------
 PairedData-0.9.1/PairedData/NAMESPACE                   |only
 PairedData-0.9.1/PairedData/R/ClassP1.R                 |only
 PairedData-0.9.1/PairedData/R/global1.R                 |only
 PairedData-0.9.1/PairedData/man/GDO.Rd                  |    4 
 PairedData-0.9.1/PairedData/man/HORSEbegin.Rd           |    4 
 PairedData-0.9.1/PairedData/man/PairedData-internal.Rd  |   24 +++++
 PairedData-0.9.1/PairedData/man/PairedData-package.Rd   |   19 +++-
 PairedData-0.9.1/PairedData/man/SKIexperts.Rd           |    4 
 PairedData-0.9.1/PairedData/man/anscombe2.Rd            |    2 
 PairedData-0.9.1/PairedData/man/bonett.seier.test.Rd    |   58 ++++++++++----
 PairedData-0.9.1/PairedData/man/effect.size.Rd          |only
 PairedData-0.9.1/PairedData/man/grambsch.test.Rd        |   48 ++++++++---
 PairedData-0.9.1/PairedData/man/iceskating.Rd           |    4 
 PairedData-0.9.1/PairedData/man/lambda.table.Rd         |    2 
 PairedData-0.9.1/PairedData/man/paired-class.Rd         |only
 PairedData-0.9.1/PairedData/man/paired.Rd               |only
 PairedData-0.9.1/PairedData/man/pitman.morgan.test.Rd   |   66 ++++++++++------
 PairedData-0.9.1/PairedData/man/plot.Rd                 |only
 PairedData-0.9.1/PairedData/man/plotBA.Rd               |   37 ++++++--
 PairedData-0.9.1/PairedData/man/plotMcNeil.Rd           |   39 ++++++---
 PairedData-0.9.1/PairedData/man/plotProfiles.Rd         |   52 ++++++++----
 PairedData-0.9.1/PairedData/man/plotSliding.Rd          |   30 ++++---
 PairedData-0.9.1/PairedData/man/rpaired.contaminated.Rd |   35 ++++++--
 PairedData-0.9.1/PairedData/man/rpaired.gld.Rd          |   33 +++++---
 PairedData-0.9.1/PairedData/man/rugby.Rd                |    2 
 PairedData-0.9.1/PairedData/man/shoulder.Rd             |    6 +
 PairedData-0.9.1/PairedData/man/summary.Rd              |only
 PairedData-0.9.1/PairedData/man/t.test.Rd               |only
 PairedData-0.9.1/PairedData/man/yuen.test.Rd            |only
 41 files changed, 364 insertions(+), 183 deletions(-)

More information about PairedData at CRAN
Permanent link

Package monoProc (with last version 1.0-6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-10-11 1.0-6
2005-09-21 1.0-4

Permanent link
Package textir updated to version 1.8-4 with previous version 1.8-3 dated 2012-03-19

Title: Inverse Regression for Text Analysis
Description: A suite of tools for text and sentiment mining. This includes the `mnlm' function, for sparse multinomial logistic regression, `pls', a concise partial least squares routine, and the `topics' function, for efficient estimation and dimension selection in latent topic models.
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between textir versions 1.8-3 dated 2012-03-19 and 1.8-4 dated 2012-04-07

 ChangeLog          |   10 ++
 ChangeLog.orig     |only
 DESCRIPTION        |    8 +-
 MD5                |   21 ++---
 R/count.R          |   15 +++
 R/mnlm.R           |  142 +++++++++++++++++++++++--------------
 man/congress109.Rd |   15 ++-
 man/mnlm.Rd        |   23 +++---
 man/normalize.Rd   |    2 
 man/we8there.Rd    |    5 -
 man/wsjibm.Rd      |    6 -
 src/mnlogit.c      |  203 ++++++++++++++++++++++++++++++++++-------------------
 12 files changed, 289 insertions(+), 161 deletions(-)

More information about textir at CRAN
Permanent link

Package mixtools updated to version 0.4.5 with previous version 0.4.4 dated 2010-06-28

Title: Tools for analyzing finite mixture models
Description: A collection of R functions for analyzing finite mixture models. This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.
Author: Derek Young Tatiana Benaglia Didier Chauveau Ryan Elmore Tom Hettmansperger David Hunter Hoben Thomas Fengjuan Xuan
Maintainer: Derek Young

Diff between mixtools versions 0.4.4 dated 2010-06-28 and 0.4.5 dated 2012-04-07

 mixtools-0.4.4/mixtools/R/regmixinit.R             |only
 mixtools-0.4.4/mixtools/R/tauequivnormalmixEM.R    |only
 mixtools-0.4.4/mixtools/inst/doc/vignette.Rnw      |only
 mixtools-0.4.4/mixtools/inst/doc/vignette.bib      |only
 mixtools-0.4.4/mixtools/inst/doc/vignette.pdf      |only
 mixtools-0.4.4/mixtools/man/tauequivnormalmixEM.Rd |only
 mixtools-0.4.5/mixtools/DESCRIPTION                |   10 
 mixtools-0.4.5/mixtools/MD5                        |only
 mixtools-0.4.5/mixtools/NAMESPACE                  |only
 mixtools-0.4.5/mixtools/R/bootcomp.R               | 1622 +++++++++++----------
 mixtools-0.4.5/mixtools/R/lambdapert.R             |   40 
 mixtools-0.4.5/mixtools/R/logisregmixEM.R          |    3 
 mixtools-0.4.5/mixtools/R/normalmixEM.R            |    2 
 mixtools-0.4.5/mixtools/R/normalmixinit.R          |  112 -
 mixtools-0.4.5/mixtools/R/npEM.R                   |    2 
 mixtools-0.4.5/mixtools/R/npMSL.R                  |    9 
 mixtools-0.4.5/mixtools/R/poisregmixEM.R           |    3 
 mixtools-0.4.5/mixtools/R/regmix.init.R            |only
 mixtools-0.4.5/mixtools/R/regmixMH.R               |  179 +-
 mixtools-0.4.5/mixtools/R/repnormmixmodelsel.R     |    9 
 mixtools-0.4.5/mixtools/R/rmvnormmix.R             |    2 
 mixtools-0.4.5/mixtools/R/spregmix.R               |only
 mixtools-0.4.5/mixtools/R/zzz.R                    |   31 
 mixtools-0.4.5/mixtools/data/CO2data.RData         |binary
 mixtools-0.4.5/mixtools/data/Habituationdata.RData |only
 mixtools-0.4.5/mixtools/data/NOdata.RData          |binary
 mixtools-0.4.5/mixtools/data/RTdata.RData          |binary
 mixtools-0.4.5/mixtools/data/RTdata2.RData         |binary
 mixtools-0.4.5/mixtools/data/RanEffdata.RData      |binary
 mixtools-0.4.5/mixtools/data/RodFramedata.RData    |binary
 mixtools-0.4.5/mixtools/data/Waterdata.RData       |binary
 mixtools-0.4.5/mixtools/data/tonedata.RData        |only
 mixtools-0.4.5/mixtools/inst/doc/mixtools.Rnw      |only
 mixtools-0.4.5/mixtools/inst/doc/mixtools.bib      |only
 mixtools-0.4.5/mixtools/inst/doc/mixtools.pdf      |only
 mixtools-0.4.5/mixtools/man/CO2data.Rd             |    2 
 mixtools-0.4.5/mixtools/man/Habituationdata.Rd     |only
 mixtools-0.4.5/mixtools/man/dmvnorm.Rd             |   10 
 mixtools-0.4.5/mixtools/man/mixtools-internal.Rd   |    2 
 mixtools-0.4.5/mixtools/man/npMSL.Rd               |    8 
 mixtools-0.4.5/mixtools/man/regmixMH.Rd            |    7 
 mixtools-0.4.5/mixtools/man/spEM.Rd                |    9 
 mixtools-0.4.5/mixtools/man/spregmix.Rd            |only
 mixtools-0.4.5/mixtools/man/tonedata.Rd            |only
 mixtools-0.4.5/mixtools/src/KDEloc2.c              |only
 mixtools-0.4.5/mixtools/src/KDEsymloc2.c           |only
 mixtools-0.4.5/mixtools/src/npMSL.c                |  162 +-
 47 files changed, 1211 insertions(+), 1013 deletions(-)

More information about mixtools at CRAN
Permanent link

New package leapp with initial version 1.0
Package: leapp
Version: 1.0
Date: 2011-06-05
Title: latent effect adjustment after primary projection
Author: Yunting Sun , Nancy R.Zhang , Art B.Owen
Maintainer: Yunting Sun
Description: These functions take a gene expression value matrix, a primary covariate vector, an additional known covariates matrix. A two stage analysis is applied to counter the effects of latent variables on the rankings of hypotheses. The estimation and adjustment of latent effects are proposed by Sun, Zhang and Owen (2011). "leapp" is developed in the context of microarray experiments, but may be used as a general tool for high throughput data sets where dependence may be involved.
Depends: R (>= 2.2.1), sva, MASS
License: GPL (>= 2)
Packaged: 2012-04-07 01:31:51 UTC; yuntings
Repository: CRAN
Date/Publication: 2012-04-07 04:53:17

More information about leapp at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.