Title: Bayesian Inference for Zero-Inflated Count Models
Diff between zic versions 0.6.2 dated 2011-12-21 and 0.7.0 dated 2012-04-20
Description: This package provides MCMC algorithms for the analysis of
zero-inflated count models. The case of stochastic search
variable selection (SVS) is also considered. All MCMC samplers
are coded in C++ for improved efficiency. A data set
considering the demand for health care is provided.
Author: Markus Jochmann
Maintainer: Markus Jochmann
zic-0.6.2/zic/man/zic_ssvs.Rd |only
zic-0.6.2/zic/src/ars.cc |only
zic-0.6.2/zic/src/ars.h |only
zic-0.6.2/zic/src/cvm.h |only
zic-0.6.2/zic/src/cvm_arrays.cc |only
zic-0.6.2/zic/src/cvm_axpym.f |only
zic-0.6.2/zic/src/cvm_blas.h |only
zic-0.6.2/zic/src/cvm_copym.f |only
zic-0.6.2/zic/src/cvm_dmexp.f |only
zic-0.6.2/zic/src/cvm_dpoly.f |only
zic-0.6.2/zic/src/cvm_globals.cc |only
zic-0.6.2/zic/src/cvm_idamax.f |only
zic-0.6.2/zic/src/cvm_idamin.f |only
zic-0.6.2/zic/src/cvm_infnm.f |only
zic-0.6.2/zic/src/cvm_npoly.f |only
zic-0.6.2/zic/src/cvm_rmatrix.cc |only
zic-0.6.2/zic/src/cvm_rvector.cc |only
zic-0.6.2/zic/src/cvm_scalm.f |only
zic-0.6.2/zic/src/cvm_srmatrix.cc |only
zic-0.6.2/zic/src/cvm_utils.cc |only
zic-0.6.2/zic/src/zic.cc |only
zic-0.6.2/zic/src/zic.h |only
zic-0.7.0/zic/DESCRIPTION | 17 ++-
zic-0.7.0/zic/MD5 | 44 +++-------
zic-0.7.0/zic/NAMESPACE | 2
zic-0.7.0/zic/R/zic.R | 151 +++++++++++++++--------------------
zic-0.7.0/zic/man/docvisits.Rd | 15 +--
zic-0.7.0/zic/man/zic.Rd | 75 +++++++----------
zic-0.7.0/zic/man/zic.ssvs.Rd |only
zic-0.7.0/zic/src/Makevars | 4
zic-0.7.0/zic/src/Makevars.win |only
zic-0.7.0/zic/src/random_R.cc |only
zic-0.7.0/zic/src/random_R.h | 97 ++++------------------
zic-0.7.0/zic/src/spikeslab.cc |only
zic-0.7.0/zic/src/spikeslab.h |only
zic-0.7.0/zic/src/zic_R_interface.cc |only
zic-0.7.0/zic/src/zicmodel.cc |only
zic-0.7.0/zic/src/zicmodel.h |only
38 files changed, 156 insertions(+), 249 deletions(-)
Title: SyBiL - Efficient constrained based modelling in R
Diff between sybil versions 1.0.1 dated 2012-03-16 and 1.0.2 dated 2012-04-20
Description: The package SyBiL is a Systems Biology Library for R,
implementing algorithms for constraint based analyses of
metabolic networks (e.g. flux-balance analysis (FBA), linera
MOMA, robustness analysis and flux variability analysis).
Author: Gabriel Gelius-Dietrich [cre], C. Jonathan Fritzemeier [ctb],
Rajen Piernikarczyk [ctb], Benjamin Braasch [ctb]
Maintainer: Gabriel Gelius-Dietrich
sybil-1.0.1/sybil/NEWS |only
sybil-1.0.2/sybil/DESCRIPTION | 31 -
sybil-1.0.2/sybil/MD5 | 112 ++-
sybil-1.0.2/sybil/R/addExchReact.R |only
sybil-1.0.2/sybil/R/addReact.R |only
sybil-1.0.2/sybil/R/blockedReact.R | 10
sybil-1.0.2/sybil/R/checkDefaultMethod.R | 12
sybil-1.0.2/sybil/R/doubleReact.R | 2
sybil-1.0.2/sybil/R/findExchReact.R | 7
sybil-1.0.2/sybil/R/fluxDistributionClass.R | 2
sybil-1.0.2/sybil/R/fluxVar.R | 14
sybil-1.0.2/sybil/R/generics.R | 10
sybil-1.0.2/sybil/R/mod2irrev.R | 26
sybil-1.0.2/sybil/R/modelorg2text.R | 6
sybil-1.0.2/sybil/R/modelorg2tsv.R | 7
sybil-1.0.2/sybil/R/modelorgClass.R | 2
sybil-1.0.2/sybil/R/multiDel.R | 58 +-
sybil-1.0.2/sybil/R/onlyChangeGPR.R | 4
sybil-1.0.2/sybil/R/optObjClass.R | 743 +++++++++++++-------------
sybil-1.0.2/sybil/R/optObj_basicfunc.R | 12
sybil-1.0.2/sybil/R/optObj_lpSolveAPIcompat.R | 4
sybil-1.0.2/sybil/R/optimizer.R | 68 --
sybil-1.0.2/sybil/R/optsolClass.R | 2
sybil-1.0.2/sybil/R/optsol_robAnaClass.R | 15
sybil-1.0.2/sybil/R/ppProcClass.R | 3
sybil-1.0.2/sybil/R/prepProbObj.R | 4
sybil-1.0.2/sybil/R/prepareSubSysMatrix.R | 10
sybil-1.0.2/sybil/R/printObjFunc.R | 41 -
sybil-1.0.2/sybil/R/reactIdClass.R | 2
sybil-1.0.2/sybil/R/readTSVmod.R | 195 ++----
sybil-1.0.2/sybil/R/rmReact.R | 9
sybil-1.0.2/sybil/R/robAna.R | 4
sybil-1.0.2/sybil/R/settings.R | 47 +
sybil-1.0.2/sybil/R/simpleFBA.R | 16
sybil-1.0.2/sybil/R/sybilErrorClass.R | 13
sybil-1.0.2/sybil/R/sybilLogClass.R | 66 +-
sybil-1.0.2/sybil/R/validmodelorg.R | 10
sybil-1.0.2/sybil/R/zzz.R | 18
sybil-1.0.2/sybil/inst/NEWS.Rd |only
sybil-1.0.2/sybil/inst/doc/optsol.Rnw |only
sybil-1.0.2/sybil/inst/doc/simpleFBA.Rnw |only
sybil-1.0.2/sybil/inst/doc/sybil.Rnw | 162 ++++-
sybil-1.0.2/sybil/inst/doc/sybil.pdf |binary
sybil-1.0.2/sybil/man/SYBIL_SETTINGS.Rd | 12
sybil-1.0.2/sybil/man/addExchReact.Rd |only
sybil-1.0.2/sybil/man/addReact.Rd |only
sybil-1.0.2/sybil/man/checkDefaultMethod.Rd | 2
sybil-1.0.2/sybil/man/findExchReact.Rd | 25
sybil-1.0.2/sybil/man/fluxVar.Rd | 8
sybil-1.0.2/sybil/man/modelorg2tsv.Rd | 8
sybil-1.0.2/sybil/man/optObj-class.Rd | 1
sybil-1.0.2/sybil/man/optimizer.Rd | 31 -
sybil-1.0.2/sybil/man/optsol_robAna-class.Rd | 7
sybil-1.0.2/sybil/man/prepProbObj.Rd | 8
sybil-1.0.2/sybil/man/readTSVmod.Rd | 95 +--
sybil-1.0.2/sybil/man/rmReact.Rd | 14
sybil-1.0.2/sybil/man/robAna.Rd | 4
sybil-1.0.2/sybil/man/sybil-package.Rd | 55 +
sybil-1.0.2/sybil/man/sybilLog-class.Rd | 15
sybil-1.0.2/sybil/vignettes/optsol.Rnw |only
sybil-1.0.2/sybil/vignettes/simpleFBA.Rnw |only
sybil-1.0.2/sybil/vignettes/sybil.Rnw | 162 ++++-
62 files changed, 1244 insertions(+), 950 deletions(-)
Title: MRI tissue classification.
Diff between mritc versions 0.3-5 dated 2011-12-27 and 0.4-0 dated 2012-04-20
Description: Various methods for MRI tissue classification.
Author: Dai Feng and Luke Tierney
Maintainer: Dai Feng
mritc-0.3-5/mritc/src/getDenSub.c |only
mritc-0.3-5/mritc/src/updateIndices.c |only
mritc-0.4-0/mritc/ChangeLog | 5 +++++
mritc-0.4-0/mritc/DESCRIPTION | 6 +++---
mritc-0.4-0/mritc/MD5 | 11 ++++++-----
mritc-0.4-0/mritc/man/mritc-package.Rd | 6 +++---
mritc-0.4-0/mritc/src/Makevars |only
mritc-0.4-0/mritc/src/getDenSub_omp.c |only
mritc-0.4-0/mritc/src/updateIndices_omp.c |only
9 files changed, 17 insertions(+), 11 deletions(-)
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.1-9 dated 2011-12-25 and 0.2-0 dated 2012-04-20
Description: Package provides the estimation of the structure and the
parameters, simulation methods and structural plots of
high-dimensional Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Alexander Ristig
HAC-0.1-9/HAC/ChangeLog |only
HAC-0.1-9/HAC/man/pHAC.Rd |only
HAC-0.1-9/HAC/man/rHAC.Rd |only
HAC-0.2-0/HAC/ChangeLog.txt |only
HAC-0.2-0/HAC/DESCRIPTION | 19 -
HAC-0.2-0/HAC/MD5 | 54 ++--
HAC-0.2-0/HAC/NAMESPACE | 41 ++-
HAC-0.2-0/HAC/R/copula_aggregate.r | 251 ++++-----------------
HAC-0.2-0/HAC/R/copula_cdf.r | 79 ++----
HAC-0.2-0/HAC/R/copula_constructor.r | 222 +++---------------
HAC-0.2-0/HAC/R/copula_empirical.r | 46 +--
HAC-0.2-0/HAC/R/copula_estimate.r | 146 +++++-------
HAC-0.2-0/HAC/R/copula_functions.r | 171 ++++++--------
HAC-0.2-0/HAC/R/copula_pdf.r | 180 +++++++--------
HAC-0.2-0/HAC/R/copula_plot.r | 413 +++++++++++++++++++----------------
HAC-0.2-0/HAC/R/copula_simulate.r | 181 ++++++---------
HAC-0.2-0/HAC/R/tree2str.r | 167 ++++++++------
HAC-0.2-0/HAC/man/Definitions.Rd | 28 --
HAC-0.2-0/HAC/man/aggregate.hac.Rd | 64 +----
HAC-0.2-0/HAC/man/copMult.Rd | 18 -
HAC-0.2-0/HAC/man/dHAC.Rd | 114 +++++----
HAC-0.2-0/HAC/man/emp.copula.Rd | 33 +-
HAC-0.2-0/HAC/man/estimate.copula.Rd | 60 ++---
HAC-0.2-0/HAC/man/get.params.Rd | 17 -
HAC-0.2-0/HAC/man/hac.Rd | 182 ++-------------
HAC-0.2-0/HAC/man/phi.Rd | 5
HAC-0.2-0/HAC/man/plot.hac.Rd | 54 +---
HAC-0.2-0/HAC/man/rAC.Rd | 7
HAC-0.2-0/HAC/man/theta2tau.Rd | 7
HAC-0.2-0/HAC/man/tree2str.Rd | 43 +--
30 files changed, 1079 insertions(+), 1523 deletions(-)
Title: Various R programming tools for model fitting
Diff between gmodels versions 2.15.1 dated 2011-01-17 and 2.15.2 dated 2012-04-20
Description: Various R programming tools for model fitting
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by Ben Bolker, Thomas Lumley, and Randall C
Johnson. Contributions from Randall C. Johnson are Copyright
(2005) SAIC-Frederick, Inc. Funded by the Intramural Research
Program, of the NIH, National Cancer Institute, Center for
Cancer Research under NCI Contract NO1-CO-12400.
Maintainer: Gregory R. Warnes
ChangeLog | 337 +++++++++++++------------------------------------------
DESCRIPTION | 7 -
MD5 |only
NEWS | 18 ++
R/ci.R | 47 ++++---
R/est.mer.R | 41 +++---
inst/ChangeLog | 337 +++++++++++++------------------------------------------
inst/NEWS | 18 ++
man/ci.Rd | 4
man/coefFrame.Rd | 6
man/estimable.Rd | 12 -
man/glh.test.Rd | 6
12 files changed, 265 insertions(+), 568 deletions(-)
More information about cec2005benchmark at CRAN
Permanent link
Title: Segmented relationships in regression models
Diff between segmented versions 0.2-8.4 dated 2012-01-31 and 0.2-9.0 dated 2012-04-20
Description: Given a (generalized) linear model, segmented `updates'
the model by adding one or more segmented relationships.
Several variables with multiple breakpoints are allowed.
Author: Vito M.R. Muggeo
Maintainer: Vito M.R. Muggeo
segmented-0.2-8.4/segmented/R/broken.line.R |only
segmented-0.2-9.0/segmented/DESCRIPTION | 8
segmented-0.2-9.0/segmented/MD5 | 46 ++--
segmented-0.2-9.0/segmented/NAMESPACE | 5
segmented-0.2-9.0/segmented/NEWS | 12 +
segmented-0.2-9.0/segmented/R/broken.line.r |only
segmented-0.2-9.0/segmented/R/davies.test.r | 3
segmented-0.2-9.0/segmented/R/plot.segmented.R | 185 +++++++------------
segmented-0.2-9.0/segmented/R/seg.control.R | 6
segmented-0.2-9.0/segmented/R/seg.glm.fit.boot.r |only
segmented-0.2-9.0/segmented/R/seg.glm.fit.r | 24 +-
segmented-0.2-9.0/segmented/R/seg.lm.fit.boot.r |only
segmented-0.2-9.0/segmented/R/seg.lm.fit.r | 26 ++
segmented-0.2-9.0/segmented/R/segmented.glm.R | 35 ++-
segmented-0.2-9.0/segmented/R/segmented.lm.R | 62 ++++--
segmented-0.2-9.0/segmented/data/down.rda |binary
segmented-0.2-9.0/segmented/data/plant.rda |binary
segmented-0.2-9.0/segmented/data/stagnant.rda |binary
segmented-0.2-9.0/segmented/man/broken.line.Rd | 2
segmented-0.2-9.0/segmented/man/davies.test.Rd | 1
segmented-0.2-9.0/segmented/man/plot.segmented.Rd | 43 ++--
segmented-0.2-9.0/segmented/man/seg.control.Rd | 43 +++-
segmented-0.2-9.0/segmented/man/seg.lm.fit.Rd | 37 +++
segmented-0.2-9.0/segmented/man/segmented-package.Rd | 4
segmented-0.2-9.0/segmented/man/segmented.Rd | 11 -
segmented-0.2-9.0/segmented/man/summary.segmented.Rd | 3
26 files changed, 341 insertions(+), 215 deletions(-)
Title: Functions to make R usage in social sciences easier (in french)
Diff between rgrs versions 0.2-16 dated 2011-09-29 and 0.2-17 dated 2012-04-20
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
Author: Julien Barnier
Maintainer: Julien Barnier
rgrs-0.2-16/rgrs/R/rgrs.update.R |only
rgrs-0.2-16/rgrs/README.org |only
rgrs-0.2-16/rgrs/man/rgrs.update.Rd |only
rgrs-0.2-16/rgrs/rgrs-Ex.R |only
rgrs-0.2-17/rgrs/DESCRIPTION | 10 +++++-----
rgrs-0.2-17/rgrs/MD5 | 7 ++-----
rgrs-0.2-17/rgrs/NAMESPACE |only
7 files changed, 7 insertions(+), 10 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 0.9-3 dated 2012-03-26 and 0.9-4 dated 2012-04-20
Description: Spatial and spatio-temporal modelling of point patterns
using the log-Gaussian Cox process
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle
Maintainer: Benjamin M. Taylor
lgcp-0.9-3/lgcp/man/Extract.stppp.Rd |only
lgcp-0.9-3/lgcp/man/GAfinalise.MonteCarloAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAfinalise.nullAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAinitialise.MonteCarloAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAinitialise.nullAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAreturnvalue.MonteCarloAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAreturnvalue.nullAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAupdate.MonteCarloAverage.Rd |only
lgcp-0.9-3/lgcp/man/GAupdate.nullAverage.Rd |only
lgcp-0.9-3/lgcp/man/GFfinalise.dump2dir.Rd |only
lgcp-0.9-3/lgcp/man/GFfinalise.nullFunction.Rd |only
lgcp-0.9-3/lgcp/man/GFinitialise.dump2dir.Rd |only
lgcp-0.9-3/lgcp/man/GFinitialise.nullFunction.Rd |only
lgcp-0.9-3/lgcp/man/GFreturnvalue.dump2dir.Rd |only
lgcp-0.9-3/lgcp/man/GFreturnvalue.nullFunction.Rd |only
lgcp-0.9-3/lgcp/man/GFupdate.dump2dir.Rd |only
lgcp-0.9-3/lgcp/man/GFupdate.nullFunction.Rd |only
lgcp-0.9-3/lgcp/man/SpatialPolygonsDataFrame.stapp.Rd |only
lgcp-0.9-3/lgcp/man/add.list.Rd |only
lgcp-0.9-3/lgcp/man/affine.SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/affine.fromFunction.Rd |only
lgcp-0.9-3/lgcp/man/affine.fromSPDF.Rd |only
lgcp-0.9-3/lgcp/man/affine.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/affine.stppp.Rd |only
lgcp-0.9-3/lgcp/man/as.SpatialGridDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/as.SpatialGridDataFrame.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/as.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/as.fromXYZ.fromFunction.Rd |only
lgcp-0.9-3/lgcp/man/as.im.fromFunction.Rd |only
lgcp-0.9-3/lgcp/man/as.im.fromSPDF.Rd |only
lgcp-0.9-3/lgcp/man/as.im.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/as.list.lgcpgrid.Rd |only
lgcp-0.9-3/lgcp/man/as.owin.stapp.Rd |only
lgcp-0.9-3/lgcp/man/as.owinlist.Rd |only
lgcp-0.9-3/lgcp/man/as.owinlist.SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/as.owinlist.stapp.Rd |only
lgcp-0.9-3/lgcp/man/as.ppp.stppp.Rd |only
lgcp-0.9-3/lgcp/man/as.stppp.Rd |only
lgcp-0.9-3/lgcp/man/as.stppp.stapp.Rd |only
lgcp-0.9-3/lgcp/man/bt.scalar.Rd |only
lgcp-0.9-3/lgcp/man/circulant.matrix.Rd |only
lgcp-0.9-3/lgcp/man/circulant.numeric.Rd |only
lgcp-0.9-3/lgcp/man/constantInTime.numeric.Rd |only
lgcp-0.9-3/lgcp/man/constantInTime.stppp.Rd |only
lgcp-0.9-3/lgcp/man/d.func.Rd |only
lgcp-0.9-3/lgcp/man/density.stppp.Rd |only
lgcp-0.9-3/lgcp/man/expectation.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/extract.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/fftinterpolate.fromFunction.Rd |only
lgcp-0.9-3/lgcp/man/fftinterpolate.fromSPDF.Rd |only
lgcp-0.9-3/lgcp/man/fftinterpolate.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/getRotation.default.Rd |only
lgcp-0.9-3/lgcp/man/getRotation.stppp.Rd |only
lgcp-0.9-3/lgcp/man/gridav.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/gridfun.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/hasNext.iter.Rd |only
lgcp-0.9-3/lgcp/man/hvals.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/identify.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/image.lgcpgrid.Rd |only
lgcp-0.9-3/lgcp/man/initialiseAMCMC.andrieuthomsh.Rd |only
lgcp-0.9-3/lgcp/man/initialiseAMCMC.constanth.Rd |only
lgcp-0.9-3/lgcp/man/intens.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/is.SPD.Rd |only
lgcp-0.9-3/lgcp/man/is.burnin.Rd |only
lgcp-0.9-3/lgcp/man/is.pow2.Rd |only
lgcp-0.9-3/lgcp/man/is.retain.Rd |only
lgcp-0.9-3/lgcp/man/lgcpgrid.array.Rd |only
lgcp-0.9-3/lgcp/man/lgcpgrid.list.Rd |only
lgcp-0.9-3/lgcp/man/lgcpgrid.matrix.Rd |only
lgcp-0.9-3/lgcp/man/loop.mcmc.Rd |only
lgcp-0.9-3/lgcp/man/mcmctrace.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/meanfield.lgcpPredict.Rd |only
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lgcp-0.9-3/lgcp/man/multiply.list.Rd |only
lgcp-0.9-3/lgcp/man/plot.fromSPDF.Rd |only
lgcp-0.9-3/lgcp/man/plot.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/plot.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/plot.lgcpQuantiles.Rd |only
lgcp-0.9-3/lgcp/man/plot.lgcpgrid.Rd |only
lgcp-0.9-3/lgcp/man/plot.mcmcdiag.Rd |only
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lgcp-0.9-3/lgcp/man/plot.temporalAtRisk.Rd |only
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lgcp-0.9-3/lgcp/man/print.dump2dir.Rd |only
lgcp-0.9-3/lgcp/man/print.fromFunction.Rd |only
lgcp-0.9-3/lgcp/man/print.fromSPDF.Rd |only
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lgcp-0.9-3/lgcp/man/print.lgcpgrid.Rd |only
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lgcp-0.9-3/lgcp/man/rescale.stppp.Rd |only
lgcp-0.9-3/lgcp/man/rr.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/selectObsWindow.default.Rd |only
lgcp-0.9-3/lgcp/man/selectObsWindow.stppp.Rd |only
lgcp-0.9-3/lgcp/man/serr.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/showGrid.default.Rd |only
lgcp-0.9-3/lgcp/man/showGrid.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/showGrid.stppp.Rd |only
lgcp-0.9-3/lgcp/man/smultiply.list.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.SpatialGridDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.bivden.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.default.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.function.Rd |only
lgcp-0.9-3/lgcp/man/spatialAtRisk.im.Rd |only
lgcp-0.9-3/lgcp/man/spatialIntensities.fromSPDF.Rd |only
lgcp-0.9-3/lgcp/man/spatialIntensities.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/stapp.SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/stapp.list.Rd |only
lgcp-0.9-3/lgcp/man/stppp.list.Rd |only
lgcp-0.9-3/lgcp/man/stppp.ppp.Rd |only
lgcp-0.9-3/lgcp/man/summary.lgcpgrid.Rd |only
lgcp-0.9-3/lgcp/man/summary.mcmc.Rd |only
lgcp-0.9-3/lgcp/man/target.and.grad.spatial.Rd |only
lgcp-0.9-3/lgcp/man/target.and.grad.spatiotemporal.Rd |only
lgcp-0.9-3/lgcp/man/temporalAtRisk.function.Rd |only
lgcp-0.9-3/lgcp/man/temporalAtRisk.numeric.Rd |only
lgcp-0.9-3/lgcp/man/toral.cov.mat.Rd |only
lgcp-0.9-3/lgcp/man/updateAMCMC.andrieuthomsh.Rd |only
lgcp-0.9-3/lgcp/man/updateAMCMC.constanth.Rd |only
lgcp-0.9-3/lgcp/man/varfield.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/varfield.lgcpPredictINLA.Rd |only
lgcp-0.9-3/lgcp/man/window.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/xvals.SpatialGridDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/xvals.default.Rd |only
lgcp-0.9-3/lgcp/man/xvals.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/xvals.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/yvals.SpatialGridDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/yvals.default.Rd |only
lgcp-0.9-3/lgcp/man/yvals.fromXYZ.Rd |only
lgcp-0.9-3/lgcp/man/yvals.lgcpPredict.Rd |only
lgcp-0.9-3/lgcp/man/zvals.SpatialGridDataFrame.Rd |only
lgcp-0.9-3/lgcp/man/zvals.default.Rd |only
lgcp-0.9-3/lgcp/man/zvals.fromXYZ.Rd |only
lgcp-0.9-4/lgcp/DESCRIPTION | 8
lgcp-0.9-4/lgcp/MD5 | 364 +++++-----
lgcp-0.9-4/lgcp/NAMESPACE | 8
lgcp-0.9-4/lgcp/R/gridAverageMethods.R | 1
lgcp-0.9-4/lgcp/R/lgcp.R | 4
lgcp-0.9-4/lgcp/R/lgcpForecast.R | 44 +
lgcp-0.9-4/lgcp/R/lgcpMethods.R | 141 +++
lgcp-0.9-4/lgcp/R/lgcpPredictSpatial.R | 4
lgcp-0.9-4/lgcp/R/lgcpPredictSpatioTemporal.R | 37 -
lgcp-0.9-4/lgcp/R/lgcpSimSpatioTemporal.R | 2
lgcp-0.9-4/lgcp/R/mcmcpars.R | 12
lgcp-0.9-4/lgcp/R/parameterEstimation.R | 126 ++-
lgcp-0.9-4/lgcp/R/selectObsWindow.R | 44 -
lgcp-0.9-4/lgcp/R/spatialAtRiskClassDef.R | 10
lgcp-0.9-4/lgcp/R/spatialOnly.R | 2
lgcp-0.9-4/lgcp/R/stpppClassDef.R | 44 +
lgcp-0.9-4/lgcp/R/temporalAtRiskClassDef.R | 5
lgcp-0.9-4/lgcp/R/zzz.R | 10
lgcp-0.9-4/lgcp/inst/doc/lgcp.pdf |binary
lgcp-0.9-4/lgcp/inst/doc/notrot.pdf |binary
lgcp-0.9-4/lgcp/inst/doc/rot.pdf |binary
lgcp-0.9-4/lgcp/man/Extract-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/GAfinalise-dot-MonteCarloAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAfinalise-dot-nullAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAinitialise-dot-MonteCarloAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAinitialise-dot-nullAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAreturnvalue-dot-MonteCarloAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAreturnvalue-dot-nullAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAupdate-dot-MonteCarloAverage.Rd |only
lgcp-0.9-4/lgcp/man/GAupdate-dot-nullAverage.Rd |only
lgcp-0.9-4/lgcp/man/GFfinalise-dot-dump2dir.Rd |only
lgcp-0.9-4/lgcp/man/GFfinalise-dot-nullFunction.Rd |only
lgcp-0.9-4/lgcp/man/GFinitialise-dot-dump2dir.Rd |only
lgcp-0.9-4/lgcp/man/GFinitialise-dot-nullFunction.Rd |only
lgcp-0.9-4/lgcp/man/GFreturnvalue-dot-dump2dir.Rd |only
lgcp-0.9-4/lgcp/man/GFreturnvalue-dot-nullFunction.Rd |only
lgcp-0.9-4/lgcp/man/GFupdate-dot-dump2dir.Rd |only
lgcp-0.9-4/lgcp/man/GFupdate-dot-nullFunction.Rd |only
lgcp-0.9-4/lgcp/man/SpatialPolygonsDataFrame-dot-stapp.Rd |only
lgcp-0.9-4/lgcp/man/add-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/affine-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/affine-dot-fromFunction.Rd |only
lgcp-0.9-4/lgcp/man/affine-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/affine-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/affine-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-SpatialGridDataFrame-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-SpatialGridDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-array-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-fromXYZ-dot-fromFunction.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-im-dot-fromFunction.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-im-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-im-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-list-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-owin-dot-stapp.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-owinlist-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-owinlist-dot-stapp.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-owinlist.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-ppp-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-stppp-dot-stapp.Rd |only
lgcp-0.9-4/lgcp/man/as-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/bt-dot-scalar.Rd |only
lgcp-0.9-4/lgcp/man/circulant-dot-matrix.Rd |only
lgcp-0.9-4/lgcp/man/circulant-dot-numeric.Rd |only
lgcp-0.9-4/lgcp/man/constantInTime-dot-numeric.Rd |only
lgcp-0.9-4/lgcp/man/constantInTime-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/d-dot-func.Rd |only
lgcp-0.9-4/lgcp/man/density-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/discreteWindow-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/discreteWindow.Rd |only
lgcp-0.9-4/lgcp/man/dot-onAttach.Rd |only
lgcp-0.9-4/lgcp/man/expectation-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/extract-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/fftinterpolate-dot-fromFunction.Rd |only
lgcp-0.9-4/lgcp/man/fftinterpolate-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/fftinterpolate-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/getRotation-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/getRotation-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/ginhomAverage.Rd | 5
lgcp-0.9-4/lgcp/man/gridav-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/gridfun-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/hasNext-dot-iter.Rd |only
lgcp-0.9-4/lgcp/man/hvals-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/identify-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/image-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/initialiseAMCMC-dot-andrieuthomsh.Rd |only
lgcp-0.9-4/lgcp/man/initialiseAMCMC-dot-constanth.Rd |only
lgcp-0.9-4/lgcp/man/integerise-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/integerise.Rd |only
lgcp-0.9-4/lgcp/man/intens-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/intens.Rd | 2
lgcp-0.9-4/lgcp/man/is-dot-SPD.Rd |only
lgcp-0.9-4/lgcp/man/is-dot-burnin.Rd |only
lgcp-0.9-4/lgcp/man/is-dot-pow2.Rd |only
lgcp-0.9-4/lgcp/man/is-dot-retain.Rd |only
lgcp-0.9-4/lgcp/man/lambdaEst.Rd | 11
lgcp-0.9-4/lgcp/man/lgcp.Rd | 4
lgcp-0.9-4/lgcp/man/lgcpForecast.Rd | 8
lgcp-0.9-4/lgcp/man/lgcpPredict.Rd | 2
lgcp-0.9-4/lgcp/man/lgcpPredictSpatial.Rd | 2
lgcp-0.9-4/lgcp/man/lgcpSim.Rd | 2
lgcp-0.9-4/lgcp/man/lgcpSimSpatial.Rd | 2
lgcp-0.9-4/lgcp/man/lgcpgrid-dot-array.Rd |only
lgcp-0.9-4/lgcp/man/lgcpgrid-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/lgcpgrid-dot-matrix.Rd |only
lgcp-0.9-4/lgcp/man/loop-dot-mcmc.Rd |only
lgcp-0.9-4/lgcp/man/mcmcpars.Rd | 4
lgcp-0.9-4/lgcp/man/mcmctrace-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/meanfield-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/meanfield-dot-lgcpPredictINLA.Rd |only
lgcp-0.9-4/lgcp/man/multiply-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-lgcpQuantiles.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-mcmcdiag.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/plot-dot-temporalAtRisk.Rd |only
lgcp-0.9-4/lgcp/man/plotExceed-dot-array.Rd |only
lgcp-0.9-4/lgcp/man/plotExceed-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-dump2dir.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-fromFunction.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-gridaverage.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-mcmc.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-stapp.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/print-dot-temporalAtRisk.Rd |only
lgcp-0.9-4/lgcp/man/quantile-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/quantile-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/rescale-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/rr-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/rr.Rd | 2
lgcp-0.9-4/lgcp/man/seintens-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/seintens.Rd |only
lgcp-0.9-4/lgcp/man/selectObsWindow-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/selectObsWindow-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/selectObsWindow.Rd | 4
lgcp-0.9-4/lgcp/man/serr-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/serr.Rd | 2
lgcp-0.9-4/lgcp/man/showGrid-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/showGrid-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/showGrid-dot-stppp.Rd |only
lgcp-0.9-4/lgcp/man/smultiply-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-SpatialGridDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-bivden.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-function.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk-dot-im.Rd |only
lgcp-0.9-4/lgcp/man/spatialAtRisk.Rd | 12
lgcp-0.9-4/lgcp/man/spatialIntensities-dot-fromSPDF.Rd |only
lgcp-0.9-4/lgcp/man/spatialIntensities-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/spatialparsEst.Rd | 8
lgcp-0.9-4/lgcp/man/stapp-dot-SpatialPolygonsDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/stapp-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/stppp-dot-list.Rd |only
lgcp-0.9-4/lgcp/man/stppp-dot-ppp.Rd |only
lgcp-0.9-4/lgcp/man/stppp.Rd | 2
lgcp-0.9-4/lgcp/man/summary-dot-lgcpgrid.Rd |only
lgcp-0.9-4/lgcp/man/summary-dot-mcmc.Rd |only
lgcp-0.9-4/lgcp/man/target-dot-and-dot-grad-dot-spatial.Rd |only
lgcp-0.9-4/lgcp/man/target-dot-and-dot-grad-dot-spatiotemporal.Rd |only
lgcp-0.9-4/lgcp/man/temporalAtRisk-dot-function.Rd |only
lgcp-0.9-4/lgcp/man/temporalAtRisk-dot-numeric.Rd |only
lgcp-0.9-4/lgcp/man/toral-dot-cov-dot-mat.Rd |only
lgcp-0.9-4/lgcp/man/updateAMCMC-dot-andrieuthomsh.Rd |only
lgcp-0.9-4/lgcp/man/updateAMCMC-dot-constanth.Rd |only
lgcp-0.9-4/lgcp/man/varfield-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/varfield-dot-lgcpPredictINLA.Rd |only
lgcp-0.9-4/lgcp/man/window-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/xvals-dot-SpatialGridDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/xvals-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/xvals-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/xvals-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/yvals-dot-SpatialGridDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/yvals-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/yvals-dot-fromXYZ.Rd |only
lgcp-0.9-4/lgcp/man/yvals-dot-lgcpPredict.Rd |only
lgcp-0.9-4/lgcp/man/zvals-dot-SpatialGridDataFrame.Rd |only
lgcp-0.9-4/lgcp/man/zvals-dot-default.Rd |only
lgcp-0.9-4/lgcp/man/zvals-dot-fromXYZ.Rd |only
329 files changed, 616 insertions(+), 322 deletions(-)
Title: R Interface to C API of GLPK
Diff between glpkAPI versions 1.2.1 dated 2012-03-15 and 1.2.3 dated 2012-04-20
Description: R Interface to C API of GLPK, needs GLPK Version >= 4.42
Author: Gabriel Gelius-Dietrich [cre]
Maintainer: Gabriel Gelius-Dietrich
glpkAPI-1.2.1/glpkAPI/INSTALL |only
glpkAPI-1.2.1/glpkAPI/NEWS |only
glpkAPI-1.2.1/glpkAPI/README |only
glpkAPI-1.2.1/glpkAPI/src/Makevars |only
glpkAPI-1.2.1/glpkAPI/src/config.h |only
glpkAPI-1.2.3/glpkAPI/DESCRIPTION | 8
glpkAPI-1.2.3/glpkAPI/MD5 | 39 +-
glpkAPI-1.2.3/glpkAPI/NAMESPACE | 8
glpkAPI-1.2.3/glpkAPI/R/generics.R | 16
glpkAPI-1.2.3/glpkAPI/R/glpkAPI.R | 274 +++++++--------
glpkAPI-1.2.3/glpkAPI/R/glpk_ptrClass.R | 42 +-
glpkAPI-1.2.3/glpkAPI/cleanup |only
glpkAPI-1.2.3/glpkAPI/configure | 482 +++++++++++++--------------
glpkAPI-1.2.3/glpkAPI/configure.ac | 245 +++++++------
glpkAPI-1.2.3/glpkAPI/inst/INSTALL |only
glpkAPI-1.2.3/glpkAPI/inst/NEWS.Rd |only
glpkAPI-1.2.3/glpkAPI/inst/README |only
glpkAPI-1.2.3/glpkAPI/inst/c2r.map | 236 ++++++-------
glpkAPI-1.2.3/glpkAPI/inst/doc/glpkAPI.Rnw | 7
glpkAPI-1.2.3/glpkAPI/inst/doc/glpkAPI.pdf |binary
glpkAPI-1.2.3/glpkAPI/man/glpkAPI-package.Rd | 2
glpkAPI-1.2.3/glpkAPI/man/glpkPtr-class.Rd | 42 +-
glpkAPI-1.2.3/glpkAPI/src/Makevars.in | 6
glpkAPI-1.2.3/glpkAPI/src/glpkAPI.c | 2
glpkAPI-1.2.3/glpkAPI/vignettes/glpkAPI.Rnw | 7
25 files changed, 717 insertions(+), 699 deletions(-)
Title: Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Diff between saws versions 0.9-3.3 dated 2010-07-24 and 0.9-5.3 dated 2012-04-20
Description: Tests coefficients with sandwich estimator of variance and
with small samples. Regression types supported are gee, cox
regression, and conditional logistic regression.
Author: Michael Fay
Maintainer: Michael Fay
saws-0.9-3.3/saws/NEWS |only
saws-0.9-3.3/saws/inst/doc/FayGraubard.dvi |only
saws-0.9-5.3/saws/DESCRIPTION | 10 +++++-----
saws-0.9-5.3/saws/MD5 |only
saws-0.9-5.3/saws/R/mgee.R | 6 ++++--
saws-0.9-5.3/saws/R/print.saws.R | 17 +++++++++++++----
saws-0.9-5.3/saws/inst/News.Rd |only
saws-0.9-5.3/saws/inst/doc/FayGraubard.pdf |binary
saws-0.9-5.3/saws/man/saws-package.Rd | 4 ++--
9 files changed, 24 insertions(+), 13 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-8-5 dated 2012-02-09 and 0.9-9 dated 2012-04-20
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and
available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 8 ++--
MD5 | 71 +++++++++++++++++++++++-------------------
R/ancova.multcomp.R |only
R/bootstrap.R | 15 ++------
R/chisq.bintest.R |only
R/ci.R |only
R/cochran.qtest.R | 4 +-
R/cox.resid.R | 32 ++++++++++++------
R/cramer.coeff.R | 51 +++++++++++++++++-------------
R/least.rect.R | 2 -
R/mod.R | 18 +++++++---
R/mqqnorm.R |only
R/plotresid.R | 35 +++++++++++++++-----
R/print.chisq.bintest.R |only
R/print.chisq.exp.R | 2 -
R/print.chisq.theo.multcomp.R | 2 -
R/print.cramer.coeff.R | 15 +++++---
R/print.surv.multcomp.R | 2 -
R/print.wilcox.signtest.R | 9 ++---
R/spearman.ci.R | 18 ++--------
R/surv.multcomp.R | 7 +++-
R/wilcox.paired.multcomp.R | 16 ++-------
R/wilcox.signtest.R | 54 +++++++++++++++++++++----------
R/zzz.R | 2 -
RVAideMemoire-Ex.R | 64 ++++++++++++++++++++++++++++++-------
man/RVAideMemoire-package.Rd | 4 +-
man/ancova.multcomp.Rd |only
man/bootstrap.Rd | 4 +-
man/chisq.bintest.Rd |only
man/chisq.exp.Rd | 4 +-
man/ci.Rd |only
man/cox.resid.Rd | 7 +---
man/cramer.coeff.Rd | 16 +++++----
man/mod.Rd | 10 ++++-
man/mqqnorm.Rd |only
man/plotresid.Rd | 6 +--
man/print.bootstrap.Rd | 1
man/spearman.ci.Rd | 4 +-
man/surv.multcomp.Rd | 1
man/wilcox.paired.multcomp.Rd | 17 ++--------
man/wilcox.signtest.Rd | 16 ++++-----
41 files changed, 307 insertions(+), 210 deletions(-)
Title: Full feature implementation of hash/associated
arrays/dictionaries
Description: This package implements a data structure similar to hashes
in Perl and dictionaries in Python but with a purposefully R
flavor. For objects of appreciable size, access using hashes
outperforms native named lists and vectors.
Author: ORPHANED
Maintainer: ORPHANED
Diff between hash versions 2.1.0.1 dated 2012-04-12 and 2.1.0.2 dated 2012-04-20
DESCRIPTION | 17 +++++++---------- MD5 | 2 +- 2 files changed, 8 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-03 1.2-1
2006-05-29 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-08 1.2.2
2011-06-17 1.2.1
2010-07-26 1.0.1
2010-05-03 0.20.0
2009-11-29 0.14.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-06 1.2.3
2011-03-04 1.2.2
2011-03-03 1.2.1
2009-09-05 1.02
2009-04-19 1.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-06 1.5.4
2009-09-13 1.05-1
2009-08-21 1.03
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-04 1.2.1
2010-07-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-22 0.1.3
2011-08-21 0.1.1
Title: Bayesian treed Gaussian process models
Diff between tgp versions 2.4-5 dated 2012-02-02 and 2.4-7 dated 2012-04-20
Description: Bayesian nonstationary, semiparametric nonlinear
regression and design by treed Gaussian processes (GPs) with
jumps to the limiting linear model (LLM). Special cases also
implemented include Bayesian linear models, CART, treed linear
models, stationary separable and isotropic GPs, and GP
single-index models. Provides 1-d and 2-d plotting functions
(with projection and slice capabilities) and tree drawing,
designed for visualization of tgp-class output. Sensitivity
analysis and multi-resolution models are supported. Sequential
experimental design and adaptive sampling functions are also
provided, including ALM, ALC, and expected improvement. The
latter supports derivative-free optimization of noisy black-box
functions.
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
tgp-2.4-5/tgp/predict.tgp.R |only
tgp-2.4-7/tgp/ChangeLog | 16 +++++++++++++++
tgp-2.4-7/tgp/DESCRIPTION | 6 ++---
tgp-2.4-7/tgp/MD5 | 33 +++++++++++++++----------------
tgp-2.4-7/tgp/R/lhs.R | 2 +
tgp-2.4-7/tgp/R/predict.tgp.R | 9 +++++++-
tgp-2.4-7/tgp/R/tgp.R | 15 +++++++++++---
tgp-2.4-7/tgp/R/tgp.plot.slice.R | 3 +-
tgp-2.4-7/tgp/R/tgp.postprocess.R | 5 +++-
tgp-2.4-7/tgp/inst/doc/tgp.pdf |binary
tgp-2.4-7/tgp/inst/doc/tgp2.pdf |binary
tgp-2.4-7/tgp/src/all_draws.c | 2 -
tgp-2.4-7/tgp/src/bessel_k.c | 4 ---
tgp-2.4-7/tgp/src/gen_covar.c | 2 -
tgp-2.4-7/tgp/src/lh.c | 2 -
tgp-2.4-7/tgp/src/predict_linear.c | 6 -----
tgp-2.4-7/tgp/src/sim.cc | 5 +++-
tgp-2.4-7/tgp/src/tgp.cc | 39 +++++++++++++++++++------------------
18 files changed, 90 insertions(+), 59 deletions(-)
Title: R Package for Causal Mediation Analysis
Diff between mediation versions 4.0 dated 2012-03-20 and 4.0.1 dated 2012-04-20
Description: mediation is a publicly available R package that allows
both parametric and nonparametric causal mediation analysis.
It implements the methods and suggestions in Imai, Keele, and
Yamamoto (2010) and Imai, Keele, Tingley (2010). In addition
to the estimation of causal mediation effects, the software
also allows researchers to conduct sensitivity analysis for
certain parametric models.
Author: Dustin Tingley
Maintainer: Dustin Tingley
mediation-4.0.1/mediation/ChangeLog | 1
mediation-4.0.1/mediation/DESCRIPTION | 8
mediation-4.0.1/mediation/MD5 | 14
mediation-4.0.1/mediation/R/mediate.R | 706 +++++++++++------------
mediation-4.0.1/mediation/R/mediate.designs.R | 99 +--
mediation-4.0.1/mediation/data/CEDdata.RData |only
mediation-4.0.1/mediation/inst/doc/mediation.pdf |binary
mediation-4.0.1/mediation/man/CEDdata.Rd |only
mediation-4.0.1/mediation/man/mediate.ced.Rd | 21
mediation-4.0/mediation/.Rapp.history |only
mediation-4.0/mediation/data/.Rapp.history |only
11 files changed, 427 insertions(+), 422 deletions(-)