Title: Insightful Robust Library
Diff between robust versions 0.3-11 dated 2010-04-28 and 0.3-19 dated 2012-04-23
Description: A package of robust methods.
Author: Jiahui Wang, Ruben Zamar
Maintainer: Kjell Konis
robust-0.3-11/robust/R/Rcompatibility.q |only
robust-0.3-11/robust/R/covfmDistance2Plot.q |only
robust-0.3-11/robust/R/lmfmSRvsRDPlot.q |only
robust-0.3-11/robust/R/lmfmStdResPlot.q |only
robust-0.3-11/robust/data/breslow.dat.txt |only
robust-0.3-11/robust/data/leuk.dat.txt |only
robust-0.3-11/robust/data/mallows.dat.txt |only
robust-0.3-11/robust/data/stack.dat.txt |only
robust-0.3-11/robust/data/woodmod.dat.txt |only
robust-0.3-11/robust/man/covfmDistance2Plot.Rd |only
robust-0.3-11/robust/man/key.Rd |only
robust-0.3-11/robust/man/lmfmSRvsRDPlot.Rd |only
robust-0.3-11/robust/man/lmfmStdResPlot.Rd |only
robust-0.3-11/robust/man/splus.assign.Rd |only
robust-0.3-11/robust/man/stop.on.bdObject.Rd |only
robust-0.3-19/robust/DESCRIPTION | 16
robust-0.3-19/robust/MD5 |only
robust-0.3-19/robust/NAMESPACE |only
robust-0.3-19/robust/R/add1.lmRob.q | 2
robust-0.3-19/robust/R/anova.glmRob.q | 213 +-
robust-0.3-19/robust/R/anova.glmRoblist.q | 102 -
robust-0.3-19/robust/R/anova.lmRob.q | 163 -
robust-0.3-19/robust/R/argnames.q | 20
robust-0.3-19/robust/R/coef.glmfm.q | 2
robust-0.3-19/robust/R/coef.lmfm.q | 12
robust-0.3-19/robust/R/covRob.control.q | 16
robust-0.3-19/robust/R/covRob.q | 170 -
robust-0.3-19/robust/R/covfmDistancePlot.q |only
robust-0.3-19/robust/R/covfmEllipsesPlot.q | 68
robust-0.3-19/robust/R/covfmScreePlot.q | 44
robust-0.3-19/robust/R/covfmSqrtMDPlot.q | 46
robust-0.3-19/robust/R/drop1.lmRob.q | 88
robust-0.3-19/robust/R/fit.models.q | 299 +--
robust-0.3-19/robust/R/gen.data.q | 2
robust-0.3-19/robust/R/get.fit.models.database.q | 68
robust-0.3-19/robust/R/glmRob.Initial.LMS.q | 8
robust-0.3-19/robust/R/glmRob.cubif.Ini.q | 104 -
robust-0.3-19/robust/R/glmRob.cubif.null.q | 60
robust-0.3-19/robust/R/glmRob.cubif.q | 202 +-
robust-0.3-19/robust/R/glmRob.gfedca.q | 10
robust-0.3-19/robust/R/glmRob.gicstp.q | 8
robust-0.3-19/robust/R/glmRob.gintac.q | 98 -
robust-0.3-19/robust/R/glmRob.gymain.q | 124 -
robust-0.3-19/robust/R/glmRob.gytstp.q | 114 -
robust-0.3-19/robust/R/glmRob.ktaskw.q | 62
robust-0.3-19/robust/R/glmRob.mallows.control.q | 2
robust-0.3-19/robust/R/glmRob.mallows.q | 7
robust-0.3-19/robust/R/glmRob.misclass.control.q | 6
robust-0.3-19/robust/R/glmRob.misclass.q | 6
robust-0.3-19/robust/R/library.q | 2
robust-0.3-19/robust/R/lmRob.RFPE.q | 22
robust-0.3-19/robust/R/lmRob.const.q | 32
robust-0.3-19/robust/R/lmRob.control.q | 18
robust-0.3-19/robust/R/lmRob.eff0.q | 23
robust-0.3-19/robust/R/lmRob.effad.q | 4
robust-0.3-19/robust/R/lmRob.effvy.q | 55
robust-0.3-19/robust/R/lmRob.fit.compute.q | 1516 ++++++++--------
robust-0.3-19/robust/R/lmRob.fit.q | 21
robust-0.3-19/robust/R/lmRob.lar.q | 39
robust-0.3-19/robust/R/lmRob.q | 88
robust-0.3-19/robust/R/lmRob.ucovcoef.q | 49
robust-0.3-19/robust/R/lmRob.wfit.q | 41
robust-0.3-19/robust/R/lmRob.wm.q | 51
robust-0.3-19/robust/R/lmfm2DRegPlot.q | 102 -
robust-0.3-19/robust/R/lmfmOverlaidQQPlot.q | 54
robust-0.3-19/robust/R/lmfmOverlaidResDenPlot.q | 69
robust-0.3-19/robust/R/lmfmResKernDenPlot.q | 51
robust-0.3-19/robust/R/lmfmResQQPlot.q | 231 +-
robust-0.3-19/robust/R/lmfmResVsFittedPlot.q | 48
robust-0.3-19/robust/R/lmfmResVsIdxPlot.q |only
robust-0.3-19/robust/R/lmfmResVsRDPlot.q |only
robust-0.3-19/robust/R/lmfmRespVsFittedPlot.q | 40
robust-0.3-19/robust/R/lmfmSqrtResVsFittedPlot.q | 55
robust-0.3-19/robust/R/panel.addons.q | 22
robust-0.3-19/robust/R/plot.cov.q | 20
robust-0.3-19/robust/R/plot.covRob.q | 16
robust-0.3-19/robust/R/plot.covfm.q | 166 -
robust-0.3-19/robust/R/plot.glmRob.q | 16
robust-0.3-19/robust/R/plot.glmfm.q | 353 +--
robust-0.3-19/robust/R/plot.lmRob.q | 21
robust-0.3-19/robust/R/plot.lmfm.q | 310 +--
robust-0.3-19/robust/R/predict.glmRob.q | 502 ++---
robust-0.3-19/robust/R/predict.lmRob.q | 31
robust-0.3-19/robust/R/print.covfm.q | 62
robust-0.3-19/robust/R/print.glmfm.q | 52
robust-0.3-19/robust/R/print.lmfm.q | 48
robust-0.3-19/robust/R/print.summary.covfm.q | 94
robust-0.3-19/robust/R/print.summary.glmfm.q | 20
robust-0.3-19/robust/R/print.summary.lmRob.q | 22
robust-0.3-19/robust/R/print.summary.lmfm.q | 28
robust-0.3-19/robust/R/qqplot.glmRob.q | 8
robust-0.3-19/robust/R/rb.q | 149 -
robust-0.3-19/robust/R/residuals.glmRob.q | 32
robust-0.3-19/robust/R/s.logistic.misclass.fit.q | 24
robust-0.3-19/robust/R/step.lmRob.q | 413 ++--
robust-0.3-19/robust/R/summary.cov.q | 10
robust-0.3-19/robust/R/summary.covRob.q | 12
robust-0.3-19/robust/R/summary.covfm.q | 10
robust-0.3-19/robust/R/summary.glmfm.q | 10
robust-0.3-19/robust/R/summary.lmRob.q | 8
robust-0.3-19/robust/R/summary.lmfm.q | 10
robust-0.3-19/robust/R/weight.funs.q | 57
robust-0.3-19/robust/R/wt.carroll.q | 2
robust-0.3-19/robust/data/breslow.dat.txt.gz |only
robust-0.3-19/robust/data/leuk.dat.txt.gz |only
robust-0.3-19/robust/data/mallows.dat.txt.gz |only
robust-0.3-19/robust/data/stack.dat.txt.gz |only
robust-0.3-19/robust/data/woodmod.dat.txt.gz |only
robust-0.3-19/robust/man/First.lib.Rd | 10
robust-0.3-19/robust/man/covfmDistancePlot.Rd |only
robust-0.3-19/robust/man/covfmEllipsesPlot.Rd | 8
robust-0.3-19/robust/man/covfmScreePlot.Rd | 12
robust-0.3-19/robust/man/covfmSqrtMDPlot.Rd | 16
robust-0.3-19/robust/man/lmRob.Rd | 5
robust-0.3-19/robust/man/lmRob.fit.compute.Rd | 12
robust-0.3-19/robust/man/lmfm2DRegPlot.Rd | 18
robust-0.3-19/robust/man/lmfmOverlaidQQPlot.Rd | 14
robust-0.3-19/robust/man/lmfmOverlaidResDenPlot.Rd | 14
robust-0.3-19/robust/man/lmfmResKernDenPlot.Rd | 8
robust-0.3-19/robust/man/lmfmResQQPlot.Rd | 16
robust-0.3-19/robust/man/lmfmResVsFittedPlot.Rd | 14
robust-0.3-19/robust/man/lmfmResVsIdxPlot.Rd |only
robust-0.3-19/robust/man/lmfmResVsRDPlot.Rd |only
robust-0.3-19/robust/man/lmfmRespVsFittedPlot.Rd | 4
robust-0.3-19/robust/man/lmfmSqrtResVsFittedPlot.Rd | 16
robust-0.3-19/robust/man/panel.addons.Rd | 2
robust-0.3-19/robust/man/plot.covfm.Rd | 2
robust-0.3-19/robust/man/plot.glmfm.Rd | 4
robust-0.3-19/robust/man/plot.lmRob.Rd | 2
robust-0.3-19/robust/man/plot.lmfm.Rd | 6
robust-0.3-19/robust/man/step.lmRob.Rd | 6
robust-0.3-19/robust/man/undocumented.lmRob.Rd | 7
robust-0.3-19/robust/robust.xcodeproj/project.pbxproj | 58
robust-0.3-19/robust/src/Makevars | 4
robust-0.3-19/robust/src/glmrob.f | 2
robust-0.3-19/robust/src/mmprnt.c | 9
robust-0.3-19/robust/tests/Examples/robust-Ex.Rout.save | 291 +--
137 files changed, 3899 insertions(+), 3942 deletions(-)
Title: Three L1-Norm PCA Methods
Diff between pcaL1 versions 1.0 dated 2012-04-20 and 1.1 dated 2012-04-23
Description: This package contains three implementations of principal
component analysis methods using the L1 norm. The package
depends on COIN-OR Clp version >= 1.12.0. The methods
implemented are PCA-L1 (Kwak 2008), L1-PCA (Ke and Kanade 2003,
2005), and L1-PCA* (Brooks, Dula, and Boone 2012).
Author: Sapan Jot
Maintainer: Paul Brooks
ChangeLog |only
DESCRIPTION | 14 +--
INSTALL | 4 -
MD5 | 14 ++-
NEWS |only
configure | 198 +++++++++++++++++++++++++--------------------------
configure.ac | 28 -------
man/pcaL1-package.Rd | 8 +-
src/Makevars.in | 1
9 files changed, 120 insertions(+), 147 deletions(-)
Title: Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Diff between noia versions 0.94.1 dated 2010-04-20 and 0.96 dated 2012-04-23
Description: The NOIA model, as described extensively in Alvarez-Castro
& Carlborg (2007), is a framework facilitating the estimation
of genetic effects and genotype-to-phenotype maps. This package
provides the basic tools to perform linear and multilinear
regressions from real populations (provided the phenotype and
the genotype of every individuals), estimating the genetic
effects from different reference points, the genotypic values,
and the decomposition of genetic variances in a multi-locus, 2
alleles system. This package is presented in Le Rouzic &
Alvarez-Castro (2008).
Author: Arnaud Le Rouzic (2007-2010), Arne B. Gjuvsland (2010), Olivier
Ariste (2010)
Maintainer: Arnaud Le Rouzic
noia-0.94.1/noia/data/effectsNames.R |only
noia-0.94.1/noia/data/genotypesNames.R |only
noia-0.94.1/noia/man/multilinearTools.Rd |only
noia-0.94.1/noia/man/noiaMatrix.Rd |only
noia-0.96/noia/DESCRIPTION | 14 ++---
noia-0.96/noia/MD5 |only
noia-0.96/noia/NAMESPACE |only
noia-0.96/noia/R/GPmap.R | 4 +
noia-0.96/noia/R/barplot.noia.gpmap.R |only
noia-0.96/noia/R/effectsPvalues.R | 1
noia-0.96/noia/R/effectsStdErr.R |only
noia-0.96/noia/R/freqmat2Sgenofreqloc.R | 22 ++++++--
noia-0.96/noia/R/geneticEffects.R | 4 -
noia-0.96/noia/R/isolateLoc.R |only
noia-0.96/noia/R/linearRegression.R | 5 -
noia-0.96/noia/R/multilinearRegression.R | 10 +--
noia-0.96/noia/R/plot.noia.linear.R |only
noia-0.96/noia/R/plotlocus.R |only
noia-0.96/noia/R/plottwoloci.R |only
noia-0.96/noia/R/prepareRegression.R | 1
noia-0.96/noia/R/print.noia.common.R | 7 +-
noia-0.96/noia/R/print.noia.vardec.R | 19 ++++---
noia-0.96/noia/R/recomputeG.R |only
noia-0.96/noia/R/reconstructLinearEffects.R | 2
noia-0.96/noia/R/varianceDecomposition.R | 17 +-----
noia-0.96/noia/data/effectsNames.rda |only
noia-0.96/noia/data/genotypesNames.rda |only
noia-0.96/noia/man/B_geneticRegression.Rd | 47 ++++++++----------
noia-0.96/noia/man/C_GPmapanalysis.Rd | 21 +++-----
noia-0.96/noia/man/effectsNames.Rd | 73 +++++++++-------------------
noia-0.96/noia/man/geneticEffects.Rd | 22 ++------
noia-0.96/noia/man/genotypesNames.Rd | 19 ++-----
noia-0.96/noia/man/plotNoia.Rd |only
noia-0.96/noia/man/simulatePop.Rd | 49 ++++++++----------
34 files changed, 149 insertions(+), 188 deletions(-)
Title: Network Generation and Comparison
Diff between NetComp versions 1.2 dated 2012-01-27 and 1.4 dated 2012-04-23
Description: This package contains functions to carry out analyse high
throughput data analysis and to conduct dataset comparisons.
Similarity matrices from high thoughput phenotypic data
containing uninformative (e.g. wildtype) or missing data can be
calculated to report similarity of response. A suite of graph
comparisons using an adjacency or correlation matrix format are
included to facilitate quick network analysis.
Author: Shannon M. Bell
Maintainer: Shannon M. Bell
DESCRIPTION | 13 ++++++------
MD5 | 28 ++++++++++++++++----------
NAMESPACE | 4 +--
R/matrix_threshold.R |only
R/netDiff.R | 51 ++++++++++++++++++++----------------------------
R/netIntersect.R | 21 +++++++++++++------
R/netUnion.R | 44 ++++++++++++++++-------------------------
R/netVal.R |only
man/SimMeasure.Rd | 2 -
man/matrix_threshold.Rd |only
man/netDiff.Rd | 2 -
man/netIntersect.Rd | 2 -
man/netUnion.Rd | 2 -
man/netVal.Rd |only
man/shortPaths.Rd | 2 -
src/SimMeasure.c | 14 +++++++++----
src/matrix_threshold.c |only
src/netVal.c |only
18 files changed, 95 insertions(+), 90 deletions(-)
Title: Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization
Diff between cec2005benchmark versions 1.0.0 dated 2012-04-20 and 1.0.1 dated 2012-04-23
More information about cec2005benchmark at CRAN
Description: This package is a wrapper for the C implementation of the
25 benchmark functions for the CEC 2005 Special Session on
Real-Parameter Optimization. The original C code by Santosh
Tiwari and related documentation are available at
http://www.ntu.edu.sg/home/EPNSugan/.
Author: Yasser González-Fernández
Maintainer: Yasser González-Fernández
cec2005benchmark-1.0.0/cec2005benchmark/src/Makevars |only
cec2005benchmark-1.0.1/cec2005benchmark/DESCRIPTION | 8 ++++----
cec2005benchmark-1.0.1/cec2005benchmark/MD5 | 5 +++--
cec2005benchmark-1.0.1/cec2005benchmark/NEWS |only
cec2005benchmark-1.0.1/cec2005benchmark/inst/CITATION |only
5 files changed, 7 insertions(+), 6 deletions(-)
Permanent link
Title: Mining Association Rules and Frequent Itemsets
Diff between arules versions 1.0-7 dated 2011-11-04 and 1.0-8 dated 2012-04-23
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets
and association rules). Also provides interfaces to C
implementations of the association mining algorithms Apriori
and Eclat by C. Borgelt.
Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt
Hornik
Maintainer: Michael Hahsler
arules-1.0-7/arules/inst/doc/jss.bst |only
arules-1.0-7/arules/inst/doc/jss.cls |only
arules-1.0-7/arules/inst/doc/multirow.sty |only
arules-1.0-8/arules/CHANGES | 8
arules-1.0-8/arules/DESCRIPTION | 21 -
arules-1.0-8/arules/MD5 | 69 ++---
arules-1.0-8/arules/NAMESPACE | 4
arules-1.0-8/arules/R/AAADefs.R | 6
arules-1.0-8/arules/R/AllGenerics.R | 8
arules-1.0-8/arules/R/categorize.R |only
arules-1.0-8/arules/R/interestMeasures.R | 7
arules-1.0-8/arules/R/is.superset.R | 77 ++++-
arules-1.0-8/arules/R/ruleInduction.R | 2
arules-1.0-8/arules/R/supportingTransactions.R |only
arules-1.0-8/arules/data/Adult.rda |binary
arules-1.0-8/arules/data/AdultUCI.rda |binary
arules-1.0-8/arules/data/Epub.rda |binary
arules-1.0-8/arules/data/Groceries.rda |binary
arules-1.0-8/arules/data/Income.rda |binary
arules-1.0-8/arules/data/IncomeESL.rda |binary
arules-1.0-8/arules/inst/doc/arules.Rnw | 32 +-
arules-1.0-8/arules/inst/doc/arules.pdf |binary
arules-1.0-8/arules/man/Adult.Rd | 22 -
arules-1.0-8/arules/man/categorize.Rd |only
arules-1.0-8/arules/man/eclat.Rd | 10
arules-1.0-8/arules/man/interestMeasure.Rd | 3
arules-1.0-8/arules/man/is.superset.Rd | 13
arules-1.0-8/arules/man/supportingTransactions.Rd |only
arules-1.0-8/arules/man/tidLists-class.Rd | 2
arules-1.0-8/arules/src/rapriori.c | 289 +++++++++++-----------
arules-1.0-8/arules/src/reclat.c | 3
arules-1.0-8/arules/tests/associations.Rout.save | 13
arules-1.0-8/arules/tests/extract.Rout.save | 13
arules-1.0-8/arules/tests/interfaces.Rout.save | 15 -
arules-1.0-8/arules/tests/matrix.Rout.save | 13
arules-1.0-8/arules/tests/measures.Rout.save | 261 +++++++++----------
arules-1.0-8/arules/tests/sets.R | 5
arules-1.0-8/arules/tests/sets.Rout.save | 22 -
arules-1.0-8/arules/tests/transactions.Rout.save | 13
39 files changed, 486 insertions(+), 445 deletions(-)
Title: Detection of disease-associated SNP interactions in case-parent
trio data
Diff between trio versions 1.4.26 dated 2012-04-19 and 1.5.0 dated 2012-04-23
Description: Testing SNPs and SNP interactions with a genotypic TDT.
This package furthermore contains functions for computing
pairwise values of LD measures and for identifying LD blocks,
as well as functions for setting up matched case pseudo-control
genotype data for case-parent trios in order to run trio logic
regreesion, to impute missing genotypes in trios, or to
simulate case-parent trios with disease risk dependent on SNP
interaction.
Author: Holger Schwender, Qing Li, Ingo Ruczinski
Maintainer: Holger Schwender
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/allelicTDT.R | 6 +++---
R/getLDlarge.R | 5 +++--
inst/doc/trio.Rnw | 20 ++++++++++----------
inst/doc/trio.pdf |binary
man/allelicTDT.Rd | 2 +-
vignettes/trio.Rnw | 20 ++++++++++----------
8 files changed, 38 insertions(+), 37 deletions(-)
Title: CONORData
Diff between CONORData versions 1.0 dated 2011-10-04 and 1.0.1 dated 2012-04-23
Description: Example Data for Package CONOR
Author: Jason Rudy and Faramarz Valafar
Maintainer: "Jason Rudy"
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
data/MAQC.ABI.rda |binary
data/MAQC.AFX.rda |binary
data/MAQC.AFX.transfer.rda |binary
data/MAQC.AG1.rda |binary
data/MAQC.ILM.rda |binary
data/MAQC.ILM.transfer.rda |binary
data/SPERM.AFX.rda |binary
data/SPERM.AFX.transfer.rda |binary
data/SPERM.ILM.rda |binary
data/SPERM.ILM.transfer.rda |binary
man/data.Rd | 2 +-
13 files changed, 18 insertions(+), 18 deletions(-)
Title: Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences
Diff between ade4 versions 1.4-17 dated 2011-04-12 and 1.5-0 dated 2012-04-23
Description: Multivariate data analysis and graphical display.
Author: Daniel Chessel, Anne-Beatrice Dufour
Maintainer: Simon Penel
ade4-1.4-17/ade4/INDEX |only
ade4-1.4-17/ade4/R/ade4.R |only
ade4-1.5-0/ade4/ChangeLog | 81 ++++++++++++++++++++++++++++++
ade4-1.5-0/ade4/DESCRIPTION | 13 ++--
ade4-1.5-0/ade4/MD5 |only
ade4-1.5-0/ade4/NAMESPACE |only
ade4-1.5-0/ade4/R/ade4toR.R | 6 +-
ade4-1.5-0/ade4/R/amova.R | 4 -
ade4-1.5-0/ade4/R/area.plot.R | 10 +--
ade4-1.5-0/ade4/R/bca.rlq.R |only
ade4-1.5-0/ade4/R/between.R | 10 +--
ade4-1.5-0/ade4/R/betweencoinertia.R | 10 +--
ade4-1.5-0/ade4/R/cailliez.R | 4 -
ade4-1.5-0/ade4/R/coinertia.R | 10 +--
ade4-1.5-0/ade4/R/corkdist.R | 2
ade4-1.5-0/ade4/R/costatis.R | 4 -
ade4-1.5-0/ade4/R/discrimin.R | 10 +--
ade4-1.5-0/ade4/R/dist.quant.R | 2
ade4-1.5-0/ade4/R/dotcircle.R | 8 +-
ade4-1.5-0/ade4/R/dpcoa.R | 12 ++--
ade4-1.5-0/ade4/R/dudi.acm.R | 12 ++--
ade4-1.5-0/ade4/R/dudi.hillsmith.R | 2
ade4-1.5-0/ade4/R/dudi.pco.R | 2
ade4-1.5-0/ade4/R/foucart.R | 16 ++---
ade4-1.5-0/ade4/R/gearymoran.R | 2
ade4-1.5-0/ade4/R/is.euclid.R | 2
ade4-1.5-0/ade4/R/kdisteuclid.R | 6 +-
ade4-1.5-0/ade4/R/kplot.foucart.R | 6 +-
ade4-1.5-0/ade4/R/kplot.mcoa.R | 10 +--
ade4-1.5-0/ade4/R/kplot.mfa.R | 6 +-
ade4-1.5-0/ade4/R/kplot.pta.R | 8 +-
ade4-1.5-0/ade4/R/kplot.sepan.R | 12 ++--
ade4-1.5-0/ade4/R/kplot.statis.R | 14 ++---
ade4-1.5-0/ade4/R/lingoes.R | 4 -
ade4-1.5-0/ade4/R/mantel.rtest.R | 13 +---
ade4-1.5-0/ade4/R/mcoa.R | 16 ++---
ade4-1.5-0/ade4/R/mdpcoa.R | 20 +++----
ade4-1.5-0/ade4/R/mfa.R | 4 -
ade4-1.5-0/ade4/R/multispati.R | 6 +-
ade4-1.5-0/ade4/R/neig.R | 2
ade4-1.5-0/ade4/R/newick2phylog.R | 4 -
ade4-1.5-0/ade4/R/niche.R | 14 ++---
ade4-1.5-0/ade4/R/nipals.R | 4 -
ade4-1.5-0/ade4/R/orthobasis.R | 6 +-
ade4-1.5-0/ade4/R/orthogram.R | 4 -
ade4-1.5-0/ade4/R/pcaiv.R | 26 ++++-----
ade4-1.5-0/ade4/R/pcaivortho.R | 14 ++---
ade4-1.5-0/ade4/R/plot.phylog.R | 6 +-
ade4-1.5-0/ade4/R/procuste.R | 10 +--
ade4-1.5-0/ade4/R/pta.R | 2
ade4-1.5-0/ade4/R/quasieuclid.R | 2
ade4-1.5-0/ade4/R/randtest.between.R | 2
ade4-1.5-0/ade4/R/rlq.R | 12 ++--
ade4-1.5-0/ade4/R/s.arrow.R | 2
ade4-1.5-0/ade4/R/s.corcircle.R | 2
ade4-1.5-0/ade4/R/s.hist.R | 4 -
ade4-1.5-0/ade4/R/s.kde2d.R | 2
ade4-1.5-0/ade4/R/s.match.R | 2
ade4-1.5-0/ade4/R/s.multinom.R | 8 +-
ade4-1.5-0/ade4/R/s.traject.R | 4 -
ade4-1.5-0/ade4/R/s.value.R | 8 +-
ade4-1.5-0/ade4/R/scatter.acm.R | 4 -
ade4-1.5-0/ade4/R/scatter.coa.R | 16 ++---
ade4-1.5-0/ade4/R/scatter.dudi.R | 4 -
ade4-1.5-0/ade4/R/scatter.fca.R | 4 -
ade4-1.5-0/ade4/R/scatterutil.R | 14 ++---
ade4-1.5-0/ade4/R/sco.quant.R | 2
ade4-1.5-0/ade4/R/score.acm.R | 2
ade4-1.5-0/ade4/R/score.mix.R | 2
ade4-1.5-0/ade4/R/sepan.R | 4 -
ade4-1.5-0/ade4/R/statis.R | 8 +-
ade4-1.5-0/ade4/R/symbols.phylog.R | 18 +++---
ade4-1.5-0/ade4/R/table.cont.R | 6 +-
ade4-1.5-0/ade4/R/table.dist.R | 2
ade4-1.5-0/ade4/R/table.paint.R | 2
ade4-1.5-0/ade4/R/table.phylog.R | 8 +-
ade4-1.5-0/ade4/R/table.value.R | 4 -
ade4-1.5-0/ade4/R/testdim.R | 8 ++
ade4-1.5-0/ade4/R/triangle.plot.R | 14 ++---
ade4-1.5-0/ade4/R/wca.rlq.R |only
ade4-1.5-0/ade4/R/within.R | 10 +--
ade4-1.5-0/ade4/R/withincoinertia.R | 10 +--
ade4-1.5-0/ade4/R/witwit.R | 16 ++---
ade4-1.5-0/ade4/R/witwitsepan.R | 2
ade4-1.5-0/ade4/data/abouheif.eg.rda |binary
ade4-1.5-0/ade4/data/acacia.rda |binary
ade4-1.5-0/ade4/data/aminoacyl.rda |binary
ade4-1.5-0/ade4/data/apis108.rda |binary
ade4-1.5-0/ade4/data/ardeche.rda |binary
ade4-1.5-0/ade4/data/arrival.rda |binary
ade4-1.5-0/ade4/data/atlas.rda |binary
ade4-1.5-0/ade4/data/atya.rda |binary
ade4-1.5-0/ade4/data/avijons.rda |binary
ade4-1.5-0/ade4/data/avimedi.rda |binary
ade4-1.5-0/ade4/data/aviurba.rda |binary
ade4-1.5-0/ade4/data/bacteria.rda |binary
ade4-1.5-0/ade4/data/banque.rda |binary
ade4-1.5-0/ade4/data/baran95.rda |binary
ade4-1.5-0/ade4/data/bf88.rda |binary
ade4-1.5-0/ade4/data/bordeaux.rda |binary
ade4-1.5-0/ade4/data/bsetal97.rda |binary
ade4-1.5-0/ade4/data/buech.rda |binary
ade4-1.5-0/ade4/data/butterfly.rda |binary
ade4-1.5-0/ade4/data/capitales.rda |binary
ade4-1.5-0/ade4/data/carni19.rda |binary
ade4-1.5-0/ade4/data/carni70.rda |binary
ade4-1.5-0/ade4/data/carniherbi49.rda |binary
ade4-1.5-0/ade4/data/casitas.rda |binary
ade4-1.5-0/ade4/data/chatcat.rda |binary
ade4-1.5-0/ade4/data/chats.rda |binary
ade4-1.5-0/ade4/data/chazeb.rda |binary
ade4-1.5-0/ade4/data/chevaine.rda |binary
ade4-1.5-0/ade4/data/clementines.rda |binary
ade4-1.5-0/ade4/data/cnc2003.rda |binary
ade4-1.5-0/ade4/data/coleo.rda |binary
ade4-1.5-0/ade4/data/corvus.rda |binary
ade4-1.5-0/ade4/data/deug.rda |binary
ade4-1.5-0/ade4/data/doubs.rda |binary
ade4-1.5-0/ade4/data/dunedata.rda |binary
ade4-1.5-0/ade4/data/ecg.rda |binary
ade4-1.5-0/ade4/data/ecomor.rda |binary
ade4-1.5-0/ade4/data/elec88.rda |binary
ade4-1.5-0/ade4/data/escopage.rda |binary
ade4-1.5-0/ade4/data/euro123.rda |binary
ade4-1.5-0/ade4/data/fission.rda |binary
ade4-1.5-0/ade4/data/friday87.rda |binary
ade4-1.5-0/ade4/data/fruits.rda |binary
ade4-1.5-0/ade4/data/ggtortoises.rda |binary
ade4-1.5-0/ade4/data/granulo.rda |binary
ade4-1.5-0/ade4/data/hdpg.rda |binary
ade4-1.5-0/ade4/data/housetasks.rda |binary
ade4-1.5-0/ade4/data/humDNAm.rda |binary
ade4-1.5-0/ade4/data/ichtyo.rda |binary
ade4-1.5-0/ade4/data/irishdata.rda |binary
ade4-1.5-0/ade4/data/julliot.rda |binary
ade4-1.5-0/ade4/data/jv73.rda |binary
ade4-1.5-0/ade4/data/kcponds.rda |binary
ade4-1.5-0/ade4/data/lascaux.rda |binary
ade4-1.5-0/ade4/data/lizards.rda |binary
ade4-1.5-0/ade4/data/macaca.rda |binary
ade4-1.5-0/ade4/data/macon.rda |binary
ade4-1.5-0/ade4/data/macroloire.rda |binary
ade4-1.5-0/ade4/data/mafragh.rda |binary
ade4-1.5-0/ade4/data/maples.rda |binary
ade4-1.5-0/ade4/data/mariages.rda |binary
ade4-1.5-0/ade4/data/meau.rda |binary
ade4-1.5-0/ade4/data/meaudret.rda |binary
ade4-1.5-0/ade4/data/microsatt.rda |binary
ade4-1.5-0/ade4/data/mjrochet.rda |binary
ade4-1.5-0/ade4/data/mollusc.rda |binary
ade4-1.5-0/ade4/data/monde84.rda |binary
ade4-1.5-0/ade4/data/morphosport.rda |binary
ade4-1.5-0/ade4/data/newick.eg.rda |binary
ade4-1.5-0/ade4/data/njplot.rda |binary
ade4-1.5-0/ade4/data/olympic.rda |binary
ade4-1.5-0/ade4/data/oribatid.rda |binary
ade4-1.5-0/ade4/data/ours.rda |binary
ade4-1.5-0/ade4/data/palm.rda |binary
ade4-1.5-0/ade4/data/pap.rda |binary
ade4-1.5-0/ade4/data/perthi02.rda |binary
ade4-1.5-0/ade4/data/piosphere.rda |only
ade4-1.5-0/ade4/data/presid2002.rda |binary
ade4-1.5-0/ade4/data/procella.rda |binary
ade4-1.5-0/ade4/data/rankrock.rda |binary
ade4-1.5-0/ade4/data/rhizobium.rda |binary
ade4-1.5-0/ade4/data/rhone.rda |binary
ade4-1.5-0/ade4/data/rpjdl.rda |binary
ade4-1.5-0/ade4/data/santacatalina.rda |binary
ade4-1.5-0/ade4/data/sarcelles.rda |binary
ade4-1.5-0/ade4/data/seconde.rda |binary
ade4-1.5-0/ade4/data/skulls.rda |binary
ade4-1.5-0/ade4/data/steppe.rda |binary
ade4-1.5-0/ade4/data/syndicats.rda |binary
ade4-1.5-0/ade4/data/t3012.rda |binary
ade4-1.5-0/ade4/data/tarentaise.rda |binary
ade4-1.5-0/ade4/data/taxo.eg.rda |binary
ade4-1.5-0/ade4/data/tintoodiel.rda |binary
ade4-1.5-0/ade4/data/tithonia.rda |binary
ade4-1.5-0/ade4/data/tortues.rda |binary
ade4-1.5-0/ade4/data/toxicity.rda |binary
ade4-1.5-0/ade4/data/trichometeo.rda |binary
ade4-1.5-0/ade4/data/ungulates.rda |binary
ade4-1.5-0/ade4/data/vegtf.rda |binary
ade4-1.5-0/ade4/data/veuvage.rda |binary
ade4-1.5-0/ade4/data/westafrica.rda |binary
ade4-1.5-0/ade4/data/woangers.rda |binary
ade4-1.5-0/ade4/data/worksurv.rda |binary
ade4-1.5-0/ade4/data/yanomama.rda |binary
ade4-1.5-0/ade4/data/zealand.rda |binary
ade4-1.5-0/ade4/man/RV.rtest.Rd | 4 -
ade4-1.5-0/ade4/man/bca.rlq.Rd |only
ade4-1.5-0/ade4/man/between.Rd | 24 ++++----
ade4-1.5-0/ade4/man/betweencoinertia.Rd | 10 +--
ade4-1.5-0/ade4/man/coinertia.Rd | 4 -
ade4-1.5-0/ade4/man/costatis.Rd | 6 +-
ade4-1.5-0/ade4/man/dist.dudi.Rd | 4 -
ade4-1.5-0/ade4/man/doubs.Rd | 48 +++++++++--------
ade4-1.5-0/ade4/man/foucart.Rd | 4 -
ade4-1.5-0/ade4/man/kplot.pta.Rd | 4 -
ade4-1.5-0/ade4/man/ktab.Rd | 2
ade4-1.5-0/ade4/man/ktab.list.dudi.Rd | 4 -
ade4-1.5-0/ade4/man/ktab.match2ktabs.Rd | 6 +-
ade4-1.5-0/ade4/man/meau.Rd | 18 +++---
ade4-1.5-0/ade4/man/meaudret.Rd | 22 ++++----
ade4-1.5-0/ade4/man/neig.Rd | 2
ade4-1.5-0/ade4/man/niche.Rd | 8 +-
ade4-1.5-0/ade4/man/nipals.Rd | 8 +-
ade4-1.5-0/ade4/man/piosphere.Rd |only
ade4-1.5-0/ade4/man/plot.between.Rd | 24 ++++----
ade4-1.5-0/ade4/man/plot.within.Rd | 8 +-
ade4-1.5-0/ade4/man/procuste.Rd | 4 -
ade4-1.5-0/ade4/man/procuste.randtest.Rd | 4 -
ade4-1.5-0/ade4/man/procuste.rtest.Rd | 4 -
ade4-1.5-0/ade4/man/pta.Rd | 2
ade4-1.5-0/ade4/man/randtest.between.Rd | 4 -
ade4-1.5-0/ade4/man/randtest.coinertia.Rd | 4 -
ade4-1.5-0/ade4/man/randtest.discrimin.Rd | 8 +-
ade4-1.5-0/ade4/man/rtest.between.Rd | 4 -
ade4-1.5-0/ade4/man/rtest.discrimin.Rd | 10 +--
ade4-1.5-0/ade4/man/sco.class.Rd | 6 +-
ade4-1.5-0/ade4/man/sco.distri.Rd | 8 +-
ade4-1.5-0/ade4/man/sco.gauss.Rd | 6 +-
ade4-1.5-0/ade4/man/sco.label.Rd | 6 +-
ade4-1.5-0/ade4/man/statico.Rd | 6 +-
ade4-1.5-0/ade4/man/supcol.Rd | 4 -
ade4-1.5-0/ade4/man/testdim.Rd | 2
ade4-1.5-0/ade4/man/wca.rlq.Rd |only
ade4-1.5-0/ade4/man/within.Rd | 8 +-
ade4-1.5-0/ade4/man/withincoinertia.Rd | 10 +--
ade4-1.5-0/ade4/man/withinpca.Rd | 2
ade4-1.5-0/ade4/src/testdim.c | 11 ++--
231 files changed, 530 insertions(+), 440 deletions(-)
Title: The Rebmix Package
Diff between rebmix versions 2.3.0 dated 2012-01-25 and 2.4.0 dated 2012-04-23
Description: R functions for random univariate and multivariate finite
mixture generation, number of components, component weights and
component parameters estimation, printing and plotting of
finite mixtures, bootstrapping and class membership prediction.
Variables can be either continuous or discrete, may follow
normal, lognormal, Weibull, binomial, Poisson or Dirac
parametric families and should be independent within
components.
Author: Marko Nagode
Maintainer: Marko Nagode
rebmix-2.3.0/rebmix/src/Makevars.win |only
rebmix-2.4.0/rebmix/DESCRIPTION | 13
rebmix-2.4.0/rebmix/MD5 | 103 +
rebmix-2.4.0/rebmix/NAMESPACE | 62
rebmix-2.4.0/rebmix/R/IC.R |only
rebmix-2.4.0/rebmix/R/REBMIX.R | 1483 +----------------------
rebmix-2.4.0/rebmix/R/RNGMIX.R |only
rebmix-2.4.0/rebmix/R/as.number.R |only
rebmix-2.4.0/rebmix/R/boot.R |only
rebmix-2.4.0/rebmix/R/coef.REBMIX.R |only
rebmix-2.4.0/rebmix/R/ddirac.R |only
rebmix-2.4.0/rebmix/R/defaults.R |only
rebmix-2.4.0/rebmix/R/demix.R |only
rebmix-2.4.0/rebmix/R/densHistogram.x.R |only
rebmix-2.4.0/rebmix/R/densHistogram.xy.R |only
rebmix-2.4.0/rebmix/R/densKNearestNeighbour.x.R |only
rebmix-2.4.0/rebmix/R/densKNearestNeighbour.xy.R |only
rebmix-2.4.0/rebmix/R/densParzenWindow.x.R |only
rebmix-2.4.0/rebmix/R/densParzenWindow.xy.R |only
rebmix-2.4.0/rebmix/R/dfmix.R |only
rebmix-2.4.0/rebmix/R/dfmix.x.R |only
rebmix-2.4.0/rebmix/R/dfmix.xy.R |only
rebmix-2.4.0/rebmix/R/dist.x.R |only
rebmix-2.4.0/rebmix/R/dist.xy.R |only
rebmix-2.4.0/rebmix/R/extractTheta.R |only
rebmix-2.4.0/rebmix/R/is.wholenumber.R |only
rebmix-2.4.0/rebmix/R/pdirac.R |only
rebmix-2.4.0/rebmix/R/pemix.R |only
rebmix-2.4.0/rebmix/R/pfmix.R |only
rebmix-2.4.0/rebmix/R/pfmix.x.R |only
rebmix-2.4.0/rebmix/R/pfmix.xy.R |only
rebmix-2.4.0/rebmix/R/plot.REBMIX.R |only
rebmix-2.4.0/rebmix/R/predict.list.R |only
rebmix-2.4.0/rebmix/R/print.REBMIX.R |only
rebmix-2.4.0/rebmix/R/print.RNGMIX.R |only
rebmix-2.4.0/rebmix/R/print.boot.REBMIX.R |only
rebmix-2.4.0/rebmix/R/summary.REBMIX.R |only
rebmix-2.4.0/rebmix/R/summary.boot.REBMIX.R |only
rebmix-2.4.0/rebmix/data/adult.rda |binary
rebmix-2.4.0/rebmix/data/galaxy.rda |binary
rebmix-2.4.0/rebmix/data/weibull.rda |only
rebmix-2.4.0/rebmix/data/wine.rda |binary
rebmix-2.4.0/rebmix/inst/NEWS.Rd | 32
rebmix-2.4.0/rebmix/inst/doc/rebmix.Rnw | 331 ++---
rebmix-2.4.0/rebmix/inst/doc/rebmix.pdf |binary
rebmix-2.4.0/rebmix/man/AIC.Rd |only
rebmix-2.4.0/rebmix/man/AWE.Rd |only
rebmix-2.4.0/rebmix/man/BIC.Rd |only
rebmix-2.4.0/rebmix/man/CLC.Rd |only
rebmix-2.4.0/rebmix/man/HQC.Rd |only
rebmix-2.4.0/rebmix/man/ICL.Rd |only
rebmix-2.4.0/rebmix/man/ICLBIC.Rd |only
rebmix-2.4.0/rebmix/man/MDL.Rd |only
rebmix-2.4.0/rebmix/man/PRD.Rd |only
rebmix-2.4.0/rebmix/man/REBMIX.Rd | 35
rebmix-2.4.0/rebmix/man/RNGMIX.Rd | 20
rebmix-2.4.0/rebmix/man/SSE.Rd |only
rebmix-2.4.0/rebmix/man/adult.Rd | 8
rebmix-2.4.0/rebmix/man/boot.Rd |only
rebmix-2.4.0/rebmix/man/coef.REBMIX.Rd | 14
rebmix-2.4.0/rebmix/man/demix.Rd |only
rebmix-2.4.0/rebmix/man/dfmix.Rd |only
rebmix-2.4.0/rebmix/man/galaxy.Rd | 4
rebmix-2.4.0/rebmix/man/logL.Rd |only
rebmix-2.4.0/rebmix/man/pemix.Rd |only
rebmix-2.4.0/rebmix/man/pfmix.Rd |only
rebmix-2.4.0/rebmix/man/plot.REBMIX.Rd | 20
rebmix-2.4.0/rebmix/man/predict.list.Rd | 15
rebmix-2.4.0/rebmix/man/print.REBMIX.Rd | 14
rebmix-2.4.0/rebmix/man/print.RNGMIX.Rd | 14
rebmix-2.4.0/rebmix/man/print.boot.REBMIX.Rd |only
rebmix-2.4.0/rebmix/man/summary.REBMIX.Rd | 16
rebmix-2.4.0/rebmix/man/summary.boot.REBMIX.Rd |only
rebmix-2.4.0/rebmix/man/weibull.Rd |only
rebmix-2.4.0/rebmix/man/wine.Rd | 6
rebmix-2.4.0/rebmix/src/Makevars |only
rebmix-2.4.0/rebmix/src/Rrebmix.c | 1004 +++++++++++++++
rebmix-2.4.0/rebmix/src/rebmixf.c | 606 +++++----
rebmix-2.4.0/rebmix/src/rebmixf.h | 109 +
rebmix-2.4.0/rebmix/src/rngmixf.c | 14
80 files changed, 2016 insertions(+), 1907 deletions(-)
Title: Simultaneous manipulation of multiple arrays of data, with
data.list objects
Diff between multitable versions 1.3 dated 2012-03-06 and 1.4 dated 2012-04-23
Description: Many data sets do not easily fit into a single data frame.
Storing such data in a single data frame often results in
either large numbers of meaningless missing values or storage
of redundant information; yet storing them in multiple data
frames often results in long difficult-to-read workflows. The
multitable package introduces a new data object called a
data.list, which organises several data tables as a single R
object. The primary goal of multitable is to provide a more
intuitive framework for manipulating multiple-table data in R.
As data.lists can be coerced to data.frames, they can be used
with all R functions that accept an object that is coercible to
a data.frame (e.g. lm; plot; lme; and many more).
Author: Steve C Walker
Maintainer: Steve C Walker
DESCRIPTION | 6 -
MD5 | 12 +--
NEWS | 23 ++++++
R/as.R | 22 ++++--
R/print.data.list.R | 3
inst/doc/multitable.pdf |binary
tests/test.R | 176 +++++++++++++++++++++++++++++++++++-------------
7 files changed, 184 insertions(+), 58 deletions(-)
Title: Generalized Additive Models for Location Scale and Shape.
Diff between gamlss versions 4.1-2 dated 2012-02-15 and 4.1-5 dated 2012-04-23
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
gamlss-4.1-2/gamlss/R/histSmo-6-12-11.R |only
gamlss-4.1-2/gamlss/R/pb.R |only
gamlss-4.1-5/gamlss/DESCRIPTION | 8 ++++----
gamlss-4.1-5/gamlss/MD5 | 23 +++++++++++++----------
gamlss-4.1-5/gamlss/NAMESPACE | 3 ++-
gamlss-4.1-5/gamlss/R/cy.R | 13 +++++++++----
gamlss-4.1-5/gamlss/R/gamlss.R | 3 ++-
gamlss-4.1-5/gamlss/R/histSmo-6-03-12.R |only
gamlss-4.1-5/gamlss/R/lms.r |only
gamlss-4.1-5/gamlss/R/pb_19-04-2012.R |only
gamlss-4.1-5/gamlss/inst/doc/NEWS.txt | 12 ++++++++++++
gamlss-4.1-5/gamlss/man/calibration.Rd |only
gamlss-4.1-5/gamlss/man/edf.Rd | 2 +-
gamlss-4.1-5/gamlss/man/gamlss.Rd | 2 +-
gamlss-4.1-5/gamlss/man/histSmo.Rd | 12 ++++++++----
gamlss-4.1-5/gamlss/man/lms.Rd |only
16 files changed, 52 insertions(+), 26 deletions(-)
Title: Neuwirth miscellaenous
Diff between ENmisc versions 1.2-3 dated 2011-12-03 and 1.2-4 dated 2012-04-23
Description: The ENmisc library contains utility function for different
purposes: mtapply and mlapply (multivariate version of tapply
and lapply), wtd.boxplot (a boxplot with weights), and a visual
interface to restructuring mosaic plots.
Author: Erich Neuwirth
Maintainer: Erich Neuwirth
DESCRIPTION | 18 +++++++++---------
MD5 | 12 ++++++------
R/mlapply.R | 2 +-
R/mosaicupanddown.R | 36 ++++++++++++++++++------------------
R/zzz.R | 4 ++--
man/mlapply.Rd | 4 ++--
man/mtapply.Rd | 2 +-
7 files changed, 39 insertions(+), 39 deletions(-)
Title: Regularization for semiparametric additive hazards regression
Diff between ahaz versions 1.11 dated 2012-03-26 and 1.12 dated 2012-04-23
Description: Computationally efficient procedures for regularized
estimation with the semiparametric additive hazards regression
model.
Author: Anders Gorst-Rasmussen
Maintainer: Anders Gorst-Rasmussen
DESCRIPTION | 8 ++++----
MD5 | 5 +++--
inst |only
man/ahazpen.Rd | 4 ++++
4 files changed, 11 insertions(+), 6 deletions(-)
Title: QCA Graphical User Interface
Diff between QCAGUI versions 1.3-7 dated 2009-10-12 and 1.8-4 dated 2012-04-23
Description: QCAGUI is a graphical user interface (GUI) for the QCA
package, derived from R Commander. Because QCA has little to
do with statistics, the menus from Rcmdr were stripped down to
the very basics. In crisp sets QCA, data is binary therefore
it is fairly decent to treat it as categorical (1 - presence; 0
- absence). In order to ease the primary analysis (e.g. tables
of frequencies) and the creation of basic graphs, this package
activates some menus that are not available in Rcmdr but for
factors. Users should be aware, however, that QCAGUI is not a
package for statistics; Rcmdr is better suited for this
purpose.
Author: This package is 99% based on the Rcmdr package written by John
Fox
Maintainer: Adrian Dusa
QCAGUI-1.3-7/QCAGUI/R/Recode.R |only
QCAGUI-1.3-7/QCAGUI/R/analyze-menu.R |only
QCAGUI-1.3-7/QCAGUI/R/ordinalRegressionModel.R |only
QCAGUI-1.3-7/QCAGUI/data/Ebbinghaus.tab |only
QCAGUI-1.3-7/QCAGUI/data/MI.15.tab |only
QCAGUI-1.3-7/QCAGUI/data/Osa.tab |only
QCAGUI-1.3-7/QCAGUI/data/Rokkan.tab |only
QCAGUI-1.3-7/QCAGUI/data/Stokke.tab |only
QCAGUI-1.3-7/QCAGUI/data/Yamasaki.tab |only
QCAGUI-1.3-7/QCAGUI/data/big10.tab |only
QCAGUI-1.3-7/QCAGUI/data/dozen12.tab |only
QCAGUI-1.3-7/QCAGUI/data/even11.tab |only
QCAGUI-1.3-7/QCAGUI/data/lucky13.tab |only
QCAGUI-1.3-7/QCAGUI/data/mighty14.tab |only
QCAGUI-1.3-7/QCAGUI/inst/etc/QCA-menus.txt |only
QCAGUI-1.3-7/QCAGUI/inst/etc/Rcmdr-menus.txt |only
QCAGUI-1.3-7/QCAGUI/inst/etc/log-exceptions.txt |only
QCAGUI-1.3-7/QCAGUI/man/Rcmdr-package.Rd |only
QCAGUI-1.3-7/QCAGUI/man/stem.leaf.Rd |only
QCAGUI-1.3-7/QCAGUI/po/R-Rcmdr.mo |only
QCAGUI-1.3-7/QCAGUI/po/R-sl.po |only
QCAGUI-1.8-4/QCAGUI/.project |only
QCAGUI-1.8-4/QCAGUI/DESCRIPTION | 37
QCAGUI-1.8-4/QCAGUI/MD5 |only
QCAGUI-1.8-4/QCAGUI/NAMESPACE | 38
QCAGUI-1.8-4/QCAGUI/R/Rexcel-specific.R | 162
QCAGUI-1.8-4/QCAGUI/R/cluster.R | 931 -
QCAGUI-1.8-4/QCAGUI/R/commander.R | 1681 +-
QCAGUI-1.8-4/QCAGUI/R/data-menu.R | 3681 +++--
QCAGUI-1.8-4/QCAGUI/R/distributions-menu.R | 2607 ---
QCAGUI-1.8-4/QCAGUI/R/distributions-plotDistributions-menu.R | 1185 -
QCAGUI-1.8-4/QCAGUI/R/distributions-sample.R | 2257 ---
QCAGUI-1.8-4/QCAGUI/R/file-menu.R | 615
QCAGUI-1.8-4/QCAGUI/R/graphs-menu.R | 2611 ++-
QCAGUI-1.8-4/QCAGUI/R/ismdi.R |only
QCAGUI-1.8-4/QCAGUI/R/model-menu.R | 109
QCAGUI-1.8-4/QCAGUI/R/sciviews-specific.R | 578
QCAGUI-1.8-4/QCAGUI/R/startup.R | 258
QCAGUI-1.8-4/QCAGUI/R/statistics-dimensional-menu.R | 507
QCAGUI-1.8-4/QCAGUI/R/statistics-nonparametric-menu.R | 326
QCAGUI-1.8-4/QCAGUI/R/statistics-proportions-menu.R | 270
QCAGUI-1.8-4/QCAGUI/R/statistics-summaries-menu.R | 758 -
QCAGUI-1.8-4/QCAGUI/R/statistics-tables-menu.R | 603
QCAGUI-1.8-4/QCAGUI/R/statistics-variances-menu.R | 287
QCAGUI-1.8-4/QCAGUI/R/utilities.R | 3597 ++---
QCAGUI-1.8-4/QCAGUI/data/Ebbinghaus.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/MI.15.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/Osa.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/Rokkan.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/Stokke.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/Yamasaki.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/big10.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/dozen12.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/even11.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/lucky13.tab.gz |only
QCAGUI-1.8-4/QCAGUI/data/mighty14.tab.gz |only
QCAGUI-1.8-4/QCAGUI/inst/CHANGES | 5
QCAGUI-1.8-4/QCAGUI/inst/doc/User-Manual-QCAGUI.pdf |binary
QCAGUI-1.8-4/QCAGUI/inst/etc/QCAGUI-menus.txt |only
QCAGUI-1.8-4/QCAGUI/inst/etc/linux |only
QCAGUI-1.8-4/QCAGUI/inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/fr/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/id/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/it/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/ja/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/ko |only
QCAGUI-1.8-4/QCAGUI/inst/po/pt_BR/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/ro/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/ru/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/sl/LC_MESSAGES/R-Rcmdr.mo |binary
QCAGUI-1.8-4/QCAGUI/inst/po/zh |only
QCAGUI-1.8-4/QCAGUI/man/CFA.Rd |only
QCAGUI-1.8-4/QCAGUI/man/Commander-es.Rd |only
QCAGUI-1.8-4/QCAGUI/man/Commander.Rd | 208
QCAGUI-1.8-4/QCAGUI/man/Hist.Rd | 12
QCAGUI-1.8-4/QCAGUI/man/KMeans.Rd | 4
QCAGUI-1.8-4/QCAGUI/man/Plugins.Rd | 13
QCAGUI-1.8-4/QCAGUI/man/QCAGUI.package.Rd | 2
QCAGUI-1.8-4/QCAGUI/man/Rcmdr.Utilities.Rd | 134
QCAGUI-1.8-4/QCAGUI/man/Recode.Rd | 6
QCAGUI-1.8-4/QCAGUI/man/aboutQCAGUI.Rd |only
QCAGUI-1.8-4/QCAGUI/man/bin.var.Rd | 4
QCAGUI-1.8-4/QCAGUI/man/colPercents.Rd | 1
QCAGUI-1.8-4/QCAGUI/man/generalizedLinearModel.Rd | 5
QCAGUI-1.8-4/QCAGUI/man/hierarchicalCluster.Rd | 2
QCAGUI-1.8-4/QCAGUI/man/linearModel.Rd | 5
QCAGUI-1.8-4/QCAGUI/man/mergeRows.Rd |only
QCAGUI-1.8-4/QCAGUI/man/numSummary.Rd | 28
QCAGUI-1.8-4/QCAGUI/man/partial.cor.Rd | 5
QCAGUI-1.8-4/QCAGUI/man/plotMeans.Rd | 3
QCAGUI-1.8-4/QCAGUI/man/rcorr.adjust.Rd |only
QCAGUI-1.8-4/QCAGUI/man/reliability.Rd | 4
QCAGUI-1.8-4/QCAGUI/man/stepwise.Rd |only
QCAGUI-1.8-4/QCAGUI/po/R-Rcmdr.pot | 488
QCAGUI-1.8-4/QCAGUI/po/R-ca.po | 133
QCAGUI-1.8-4/QCAGUI/po/R-es.po | 7414 +++++------
QCAGUI-1.8-4/QCAGUI/po/R-fr.po | 335
QCAGUI-1.8-4/QCAGUI/po/R-id.po |only
QCAGUI-1.8-4/QCAGUI/po/R-it.po | 566
QCAGUI-1.8-4/QCAGUI/po/R-ja.po | 7403 +++++-----
QCAGUI-1.8-4/QCAGUI/po/R-ko.po |only
QCAGUI-1.8-4/QCAGUI/po/R-pt_BR.po | 7234 +++++-----
QCAGUI-1.8-4/QCAGUI/po/R-ro.po | 1847 +-
QCAGUI-1.8-4/QCAGUI/po/R-ru.po | 495
QCAGUI-1.8-4/QCAGUI/po/R-sl_utf-8.po | 1755 ++
QCAGUI-1.8-4/QCAGUI/po/R-zh.po |only
QCAGUI-1.8-4/QCAGUI/src |only
108 files changed, 27228 insertions(+), 23981 deletions(-)
Title: (Standardised) Major Axis Estimation and Testing Routines
Diff between smatr versions 3.2.4 dated 2011-12-23 and 3.2.6 dated 2012-04-23
Description: This package provides methods of fitting bivariate lines
in allometry using the major axis (MA) or standardised major
axis (SMA), and for making inferences about such lines. The
available methods of inference include confidence intervals and
one-sample tests for slope and elevation, testing for a common
slope or elevation amongst several allometric lines,
constructing a confidence interval for a common slope or
elevation, and testing for no shift along a common axis,
amongst several samples.
Author: David Warton
Maintainer: Remko Duursma
DESCRIPTION | 21 +++++---
MD5 | 17 +++---
R/defineAxis.R | 2
R/elev.com.R | 131 ++++++++++++++++++++++++++--------------------------
R/plot.sma.R | 3 -
R/sma.R | 7 +-
data/leaflife.RData |binary
data/leafmeas.RData |binary
inst |only
man/sma.Rd | 8 +--
10 files changed, 104 insertions(+), 85 deletions(-)
Title: Species Identity and Evolution in R
Diff between spider versions 1.1-2 dated 2012-03-14 and 1.1-3 dated 2012-04-23
Description: A package for the analysis of species limits and DNA
barcoding data
Author: Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline
Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank
Maintainer: Samuel Brown
DESCRIPTION | 10 +++---
MD5 | 78 +++++++++++++++++++++++++-------------------------
NEWS | 7 ++++
R/rankSlidWin.R | 2 -
data/anoteropsis.rda |binary
data/dolomedes.rda |binary
inst/CITATION | 6 ++-
man/chaoHaplo.Rd | 3 -
man/checkDNA.Rd | 12 -------
man/dataStat.Rd | 10 ------
man/is.ambig.Rd | 8 -----
man/localMinima.Rd | 4 --
man/monophyly.Rd | 7 ----
man/nearNeighbour.Rd | 4 --
man/nonConDist.Rd | 10 ------
man/nucDiag.Rd | 8 +----
man/paa.Rd | 8 -----
man/plot.slidWin.Rd | 7 ----
man/polyBalance.Rd | 8 -----
man/rankSlidWin.Rd | 7 ----
man/read.BOLD.Rd | 4 --
man/read.GB.Rd | 7 ----
man/rmSingletons.Rd | 12 -------
man/rosenberg.Rd | 4 --
man/seeBarcode.Rd | 14 --------
man/seqStat.Rd | 10 ------
man/slideAnalyses.Rd | 7 ----
man/slideBoxplots.Rd | 7 ----
man/slideNucDiag.Rd | 7 ----
man/slidingWindow.Rd | 7 ----
man/spider-package.Rd | 6 +--
man/sppDist.Rd | 6 ---
man/sppDistMatrix.Rd | 16 +---------
man/sppVector.Rd | 8 -----
man/tajima.K.Rd | 7 ----
man/tclust.Rd | 4 --
man/threshOpt.Rd | 3 -
man/tiporder.Rd | 13 +-------
man/titv.Rd | 14 +-------
man/tree.comp.Rd | 3 -
40 files changed, 77 insertions(+), 281 deletions(-)
Title: Using graphs as a navigational infrastructure.
Diff between RnavGraph versions 0.1.2 dated 2012-02-17 and 0.1.3 dated 2012-04-23
Description: GUI to explore high dimensional data (including image
data) using graphs as navigational infrastructure.
Author: Adrian R. Waddell and R. Wayne Oldford
Maintainer: Adrian Waddell
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 7 ++++++-
R/zzz.R | 14 +++++++-------
inst/doc/RnavGraph.pdf |binary
5 files changed, 21 insertions(+), 16 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 2.6.17 dated 2012-02-20 and 2.6.18 dated 2012-04-23
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab.
Thus they are available to the user as a script file or as an
aide for the user to learn R or to copy-and-paste directly into
R itself. Rattle also exports a number of utility functions
and the graphical user interface, invoked as rattle(), does not
need to be run to deploy these.
Author: Graham Williams
Maintainer: Graham Williams
DESCRIPTION | 8 ++---
MD5 | 42 +++++++++++++--------------
R/data.R | 23 +++++++++++----
R/evaluate.R | 30 ++++++++++++++-----
R/explore.R | 42 +++++++++++++++++++++++----
R/random_forest.R | 40 +++++++++++++++++++++++---
R/rattle.R | 21 +++++++++++--
R/report.R | 14 +++++----
R/rpart.R | 46 +++++++++++++++++++++---------
data/audit.RData |binary
data/locationsAUS.RData |binary
data/weather.RData |binary
data/weatherAUS.RData |binary
data/wine.RData |binary
inst/ChangeLog | 31 ++++++++++++++++++++
inst/doc/rattle.pdf |binary
inst/etc/rattle.ui | 56 +++++++++++++++++++++++++------------
inst/etc/tooltips.xml | 18 +++++++++--
inst/po/de/LC_MESSAGES/R-rattle.mo |binary
inst/po/es/LC_MESSAGES/R-rattle.mo |binary
inst/po/fr/LC_MESSAGES/R-rattle.mo |binary
inst/po/ja/LC_MESSAGES/R-rattle.mo |binary
22 files changed, 277 insertions(+), 94 deletions(-)
Title: Permutation Distribution Clustering
Diff between pdc versions 0.1 dated 2012-03-19 and 0.2 dated 2012-04-23
Description: Permutation Distribution Clustering is a clustering method
for time series. Dissimilarity of time series is formalized as
the divergence between their permutation distributions. The
permutation distribution was proposed as measure of the
complexity of a time series.
Author: Andreas M. Brandmaier
Maintainer: Andreas M. Brandmaier
ChangeLog |only
DESCRIPTION | 8 +++---
MD5 | 35 +++++++++++++++++++---------
NAMESPACE | 3 ++
R/codebook.R | 58 ++++++++++++++++++++++++++++-------------------
R/codebook.entropy.R | 4 +--
R/codeword.R |only
R/codeword2.R |only
R/codeword3.R |only
R/codeword4.R |only
R/codeword5.R |only
R/codeword6.R |only
R/codeword7.R |only
R/entropy.heuristic.R | 27 ++++++++++++++-------
R/llr.R |only
R/loo1nn.R |only
R/pdc.dist.R | 2 -
R/pdclust.R | 20 +++++++++++++---
R/plot.mine.R |only
R/print.mine.R |only
man/codebook.Rd | 3 +-
man/entropy.heuristic.Rd | 25 ++++++++++++--------
man/loo1nn.Rd |only
man/pdc.dist.Rd | 5 ++--
man/pdclust.Rd | 10 ++++----
25 files changed, 130 insertions(+), 70 deletions(-)
Title: A generalized coordinate descent (GCD) algorithm for computing
the solution path of the hybrid Huberized support vector
machine (HHSVM) and its generalization.
Diff between gcdnet versions 1.0.0 dated 2012-03-01 and 1.0.1 dated 2012-04-23
Description: This package implements a generalized coordinate descent
(GCD) algorithm for computing the solution path of the hybrid
Huberized support vector machine (HHSVM) and its
generalization, including the elastic net penalized SVM with
the squared hinge loss and the elastic net penalized logistic
regression.
Author: Yi Yang
Maintainer: Yi Yang
gcdnet-1.0.0/gcdnet/src/svmlassoNET.f90 |only
gcdnet-1.0.1/gcdnet/.hgtags |only
gcdnet-1.0.1/gcdnet/ChangeLog | 10 +
gcdnet-1.0.1/gcdnet/DESCRIPTION | 6
gcdnet-1.0.1/gcdnet/MD5 | 76 ++++----
gcdnet-1.0.1/gcdnet/R/coef.cv.gcdnet.R | 12 -
gcdnet-1.0.1/gcdnet/R/coef.gcdnet.R | 2
gcdnet-1.0.1/gcdnet/R/coef.hsvmpath.R | 22 +-
gcdnet-1.0.1/gcdnet/R/coef.logitpath.R | 22 +-
gcdnet-1.0.1/gcdnet/R/coef.sqsvmpath.R | 22 +-
gcdnet-1.0.1/gcdnet/R/cv.gcdnet.R | 50 ++---
gcdnet-1.0.1/gcdnet/R/cv.hsvmpath.R | 50 ++---
gcdnet-1.0.1/gcdnet/R/cv.logitpath.R | 58 +++---
gcdnet-1.0.1/gcdnet/R/cv.sqsvmpath.R | 51 ++---
gcdnet-1.0.1/gcdnet/R/gcdnet.R | 88 ++++------
gcdnet-1.0.1/gcdnet/R/hsvmpath.R | 30 +--
gcdnet-1.0.1/gcdnet/R/logitpath.R | 27 +--
gcdnet-1.0.1/gcdnet/R/loss.R | 28 +--
gcdnet-1.0.1/gcdnet/R/plot.cv.gcdnet.R | 33 ++-
gcdnet-1.0.1/gcdnet/R/plot.gcdnet.R | 70 ++++----
gcdnet-1.0.1/gcdnet/R/predict.cv.gcdnet.R | 12 -
gcdnet-1.0.1/gcdnet/R/predict.gcdnet.R | 4
gcdnet-1.0.1/gcdnet/R/predict.hsvmpath.R | 26 +-
gcdnet-1.0.1/gcdnet/R/predict.logitpath.R | 26 +-
gcdnet-1.0.1/gcdnet/R/predict.sqsvmpath.R | 26 +-
gcdnet-1.0.1/gcdnet/R/print.gcdnet.R | 2
gcdnet-1.0.1/gcdnet/R/sqsvmpath.R | 27 +--
gcdnet-1.0.1/gcdnet/R/utilities.R | 235 +++++++++++++--------------
gcdnet-1.0.1/gcdnet/man/FHT.Rd | 6
gcdnet-1.0.1/gcdnet/man/coef.cv.gcdnet.Rd | 5
gcdnet-1.0.1/gcdnet/man/coef.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/cv.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/plot.cv.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/plot.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/predict.cv.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/predict.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/man/print.gcdnet.Rd | 6
gcdnet-1.0.1/gcdnet/src/hsvmlassoNET.f90 | 12 -
gcdnet-1.0.1/gcdnet/src/loglassoNET.f90 | 4
gcdnet-1.0.1/gcdnet/src/sqsvmlassoNET.f90 |only
41 files changed, 541 insertions(+), 549 deletions(-)
Title: Dynamic trees for learning and design
Diff between dynaTree versions 1.2-5 dated 2012-01-07 and 1.2-6 dated 2012-04-23
Description: Inference by sequential Monte Carlo for dynamic tree
regression and classification models with hooks provided for
sequential design and optimization, fully online learning with
drift, variable selection, and sensitivity analysis of inputs.
Illustrative examples from the original dynamic trees paper are
facilitated by demos in the package; see
demo(package="dynaTree")
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 8 ++++++
DESCRIPTION | 25 ++++++++++----------
MD5 | 22 ++++++++---------
R/dynaTree.R | 3 ++
R/predict.R | 16 +++++++++---
src/cloud.cc | 69 +++++++++++++++++++++++++++-----------------------------
src/dynaTree.cc | 43 ++++++++++++++++++++++++++++------
src/matrix.c | 13 ++++------
src/pall.c | 4 +--
src/rhelp.c | 9 +++++--
src/rhelp.h | 2 +
src/tree.cc | 12 ++++-----
12 files changed, 139 insertions(+), 87 deletions(-)
Title: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
Diff between deldir versions 0.0-18 dated 2012-04-21 and 0.0-19 dated 2012-04-23
Description: Calculates the Delaunay triangulation and the Dirichlet or
Voronoi tessellation (with respect to the entire plane) of a
planar point set.
Author: Rolf Turner
Maintainer: Rolf Turner
ChangeLog | 13 +++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/First.R | 6 +++++-
man/deldir-internal.Rd | 2 +-
man/deldir.Rd | 30 +++++++++++++++++++-----------
man/plot.tile.list.Rd | 7 +++----
man/tile.list.Rd | 3 ++-
man/triang.list.Rd | 2 +-
9 files changed, 56 insertions(+), 31 deletions(-)
Title: Basis Selection from Multiple Libraries
Diff between bsml versions 1.5-0 dated 2011-05-15 and 1.5-1 dated 2012-04-23
Description: BSML stands for Basis Selection from Multiple Libraries
and it is a methodology for spatially-adaptive multivariate
regression. To fit a nonparametric or semiparametric regression
model, multiple libraries may be used to approximate the mean
function. The program will adaptively select basis functions
from each library and find the optimal model complexity by
using the Generalized Degrees of Freedom or Covariance Penalty.
Author: Junqing Wu
Maintainer: Junqing Wu
DESCRIPTION | 8 ++++----
MD5 |only
R/bsml.R | 31 ++++++++++++++++++++-----------
man/bsml.Rd | 2 +-
man/predict.bsml.Rd | 3 ++-
src/bsml.f | 31 ++++++++++++++++---------------
6 files changed, 43 insertions(+), 32 deletions(-)