Title: toolbox for pseudo and quasi random number generation and RNG
tests.
Diff between randtoolbox versions 1.11 dated 2012-01-13 and 1.12 dated 2012-04-28
Description: The package provides (1) pseudo random generators -
general linear congruential generators (Park Miller) and
multiple recursive generators (Knuth TAOCP), generalized
feedback shift register (SF-Mersenne Twister algorithm and WELL
generators); (2) quasi random generators - the Torus algorithm,
the Sobol sequence, the Halton sequence (thus include Van der
Corput sequence) and (3) some additional tests such as the gap
test, the serial test, the poker test... The package depends on
rngWELL package but it can be provided without this dependency
on demand to the maintainer. For true random number generation,
use the 'random' package, for Latin Hypercube Sampling (a
hybrid QMC method), use the 'lhs' package, a number of RNGs and
tests for RNGs are provided by 'RDieHarder', all available on
CRAN. There is also a small stand-alone package 'rngwell19937'
for the WELL19937a RNG.
Author: Yohan Chalabi, Christophe Dutang, Petr Savicky and Diethelm
Wuertz (except underlying C codes of (i) the SFMT algorithm
from M. Matsumoto and M. Saito, (ii) the Knuth-TAOCP RNG from
D. Knuth). See LICENCE file for details.
Maintainer: Christophe Dutang
randtoolbox-1.11/randtoolbox/inst/doc/DOC1e5.pdf |only
randtoolbox-1.11/randtoolbox/inst/doc/Makefile |only
randtoolbox-1.11/randtoolbox/inst/doc/randtoolbox.Rnw |only
randtoolbox-1.11/randtoolbox/inst/doc/randtoolbox.bib |only
randtoolbox-1.11/randtoolbox/inst/doc/randtoolbox.pdf |only
randtoolbox-1.11/randtoolbox/inst/doc/src |only
randtoolbox-1.11/randtoolbox/inst/doc/vanilla.pdf |only
randtoolbox-1.12/randtoolbox/DESCRIPTION | 10
randtoolbox-1.12/randtoolbox/MD5 | 33 +-
randtoolbox-1.12/randtoolbox/R/quasiRNG.R | 71 +++--
randtoolbox-1.12/randtoolbox/R/rngWELLScriptR.R | 2
randtoolbox-1.12/randtoolbox/inst/CITATION | 2
randtoolbox-1.12/randtoolbox/inst/NEWS | 15 -
randtoolbox-1.12/randtoolbox/inst/doc/.build.timestamp |only
randtoolbox-1.12/randtoolbox/inst/doc/fullpres.Rnw |only
randtoolbox-1.12/randtoolbox/inst/doc/fullpres.pdf |only
randtoolbox-1.12/randtoolbox/inst/doc/shortintro.Rnw |only
randtoolbox-1.12/randtoolbox/inst/doc/shortintro.pdf |only
randtoolbox-1.12/randtoolbox/src/LowDiscrepancy.f | 222 ++++++++---------
randtoolbox-1.12/randtoolbox/src/version.c | 2
randtoolbox-1.12/randtoolbox/tests/testHalton.R |only
randtoolbox-1.12/randtoolbox/tests/testenvir.R |only
randtoolbox-1.12/randtoolbox/vignettes |only
23 files changed, 193 insertions(+), 164 deletions(-)
Title: Data Input for Berkeley Earth Surface Temperature
Diff between BerkeleyEarth versions 1.6 dated 2012-03-05 and 1.7 dated 2012-04-28
Description: A selection of functioned designed to import the Berkeley
Earth Surface Temperature Project. Version 1.5 includes only
those function to import data.Additional packages for analysis
are forthcoming.
Author: Steven Mosher
Maintainer: Steven Mosher
BerkeleyEarth-1.6/BerkeleyEarth/R/readBerkeleyTemp.R |only
BerkeleyEarth-1.6/BerkeleyEarth/man/readBerkeleyTemp.Rd |only
BerkeleyEarth-1.7/BerkeleyEarth/DESCRIPTION | 9 +++-----
BerkeleyEarth-1.7/BerkeleyEarth/MD5 | 12 ++++++-----
BerkeleyEarth-1.7/BerkeleyEarth/R/isBigMatrix.R |only
BerkeleyEarth-1.7/BerkeleyEarth/R/readAsArray.R | 2 -
BerkeleyEarth-1.7/BerkeleyEarth/R/toArray.R |only
BerkeleyEarth-1.7/BerkeleyEarth/man/BerkeleyEarth-package.Rd | 7 +++---
BerkeleyEarth-1.7/BerkeleyEarth/man/isBigMatrix.Rd |only
BerkeleyEarth-1.7/BerkeleyEarth/man/toArray.Rd |only
10 files changed, 16 insertions(+), 14 deletions(-)
Title: Global Historical Climate Network Version 3
Diff between RghcnV3 versions 2.6 dated 2011-12-24 and 2.7 dated 2012-04-28
Description: The Rghcn package provides the core functions required to
download and format the GHCN V3 data and process it into
temperature series and temperature anomaly series. The data is
reformated so that integration with objects in the system is
straightforward. In addition, there are core functions
required to download and create land masks and functions to
download and import Sea Surface Temperature (SST) data.
Author: Steven Mosher
Maintainer: Steven Mosher
DESCRIPTION | 25 ++++++++++++-------------
MD5 | 16 ++++++++++------
R/averageStations.R | 2 +-
R/intersectInvData.R | 5 ++++-
R/isBigMatrix.R |only
R/removeNaStations.R | 11 +++++++++--
R/trimNa.R |only
man/RghcnV3-package.Rd | 4 ++--
man/isBigMatrix.Rd |only
man/readQC.Rd | 4 +---
man/trimNA.Rd |only
11 files changed, 39 insertions(+), 28 deletions(-)
Title: Basic statistical functions for package ff
Diff between ffbase versions 0.4 dated 2012-04-27 and 0.4-1 dated 2012-04-28
Description: Basic (statistical) functionality for package ff
Author: Edwin de Jonge, Jan Wijffels
Maintainer: Edwin de Jonge
DESCRIPTION | 6
MD5 | 96 ++++-----
NAMESPACE | 2
NEWS | 34 +--
R/Summary_ff.R | 2
R/auxilary.R | 64 +++---
R/chunkify.R | 92 ++++-----
R/compact.R | 68 +++---
R/cumsum.R | 172 ++++++++---------
R/cut_ff.R | 84 ++++----
R/diff_ff.R | 22 +-
R/droplevels.R | 96 ++++-----
R/ffappend.R | 176 ++++++++---------
R/ffdfdply.R | 144 +++++++-------
R/ffdfsave.R | 60 +++---
R/ffdfwith.R | 120 ++++++------
R/ffordered.R | 100 +++++-----
R/ffwhich.R | 118 +++++------
R/hist_ff.R | 96 ++++-----
R/laf_to_ffdf.R | 74 +++----
R/mean.R | 66 +++---
R/merge.R | 426 +++++++++++++++++++++----------------------
R/pkg.R | 102 +++++-----
R/quantile_ff.R | 66 +++---
R/risplit.R | 184 +++++++++---------
R/subset.R | 74 +++----
R/table_ff.R | 152 +++++++--------
R/tabulate_ff.R | 122 ++++++------
R/transform.R | 68 +++---
R/unique.R | 40 ++--
R/with.R | 208 ++++++++++----------
R/zzz.R | 6
inst/tests/testSummary.R | 146 +++++++-------
inst/tests/testchunkify.R | 30 +--
inst/tests/testcut_ff.R | 24 +-
inst/tests/testdroplevels.R | 40 ++--
inst/tests/testffappend.R | 84 ++++----
inst/tests/testmean.ff.R | 16 -
inst/tests/testmin.ff.R | 78 +++----
inst/tests/testrange_ff.R | 28 +-
inst/tests/testrisplit.R | 58 ++---
inst/tests/testsubset.R | 28 +-
inst/tests/testsum_ff.R | 30 +--
inst/tests/testtable_ff.R | 80 ++++----
inst/tests/testtabulate_ff.R | 26 +-
inst/tests/testtransform.R | 30 +--
inst/tests/testwith.R | 102 +++++-----
inst/tests/testwithin.R | 30 +--
tests/test_all.R | 10 -
49 files changed, 1992 insertions(+), 1988 deletions(-)
Title: Calls CNV from exome sequence data
Diff between ExomeDepth versions 0.7.3 dated 2012-02-23 and 0.8.0 dated 2012-04-28
Description: Calls copy number variants (CNVs) from targeted sequence
data
Author: Vincent Plagnol
Maintainer: Vincent Plagnol
DESCRIPTION | 10 ++---
MD5 | 14 ++++---
R/class_definition.R | 5 +-
R/countBamInGranges.R | 33 ++++++++++++------
R/plot_CNVs_method.R |only
data/ExomeCount.RData |binary
inst/doc/ExomeDepth-vignette.Rnw | 70 ++++++++++++++++++++++++++++++---------
inst/doc/ExomeDepth-vignette.pdf |binary
man/plot-methods.Rd |only
9 files changed, 94 insertions(+), 38 deletions(-)
Title: Dendrochronology Program Library in R
Diff between dplR versions 1.5.3 dated 2012-03-07 and 1.5.4 dated 2012-04-28
Description: This package contains functions for performing tree-ring
analyses, IO, and graphics.
Author: Andrew G. Bunn [aut, cph, cre, trl], Mikko Korpela [aut, cph],
Franco Biondi [aut, cph], Fares Qeadan [aut, cph], Christian
Zang [aut, cph]
Maintainer: Andrew G. Bunn
ChangeLog | 59 +
DESCRIPTION | 12
MD5 | 58 -
NAMESPACE | 6
R/ccf.series.rwl.R | 23
R/chron.R | 27
R/corr.rwl.seg.R | 81 -
R/corr.series.seg.R | 31
R/helpers.R | 533 +++++-----
R/read.compact.R | 13
R/read.fh.R | 18
R/read.ids.R | 2026 +++++++++++++++++++++++++++++++++++++--
R/read.tridas.R | 899 +++++++++--------
R/read.tucson.R | 77 -
R/series.rwl.plot.R | 19
R/simpleXML.R | 52 -
R/uuid.gen.R | 81 -
R/wavelet.plot.R | 84 -
R/write.compact.R | 67 -
R/write.crn.R | 68 -
R/write.tridas.R | 575 ++++++-----
R/write.tucson.R | 122 +-
dplR-Ex.R | 3
inst/po/fi/LC_MESSAGES/R-dplR.mo |binary
man/anos1.Rd | 2
man/read.ids.Rd | 234 ++++
man/rwi.stats.running.Rd | 7
man/wavelet.plot.Rd | 2
po/R-dplR.pot | 61 -
po/R-fi.po | 97 +
30 files changed, 3861 insertions(+), 1476 deletions(-)
Title: Canadian Historical Climate Network
Diff between CHCN versions 1.3 dated 2011-09-23 and 1.4 dated 2012-04-28
Description: A compilation of historical through contemporary climate
measurements scraped from the Environment Canada Website
Including tools for scraping data, creating metadata and
formating temperature files.
Author: Steven Mosher
Maintainer: Steven Mosher
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/formatGhcn.R | 19 ++++++++++++++-----
man/CHCN-package.Rd | 4 ++--
4 files changed, 23 insertions(+), 14 deletions(-)