Title: Gene region-level testing procedure for SNP data, using the min
P test resampling approach
Diff between minPtest versions 1.1 dated 2011-06-06 and 1.2 dated 2012-05-02
Description: Package minPtest is designed for estimating a gene
region-level summary for SNP data from case-control studies
using a permutation-based resampling method, called min P test,
allowing execution on a compute cluster or multicore computer.
Author: Stefanie Hieke
Maintainer: Stefanie Hieke
DESCRIPTION | 8 -
MD5 |only
R/generateSNPs.R | 2
R/minPtest.R | 84 +++++++++------
R/plot.minPtest.R | 162 +++++++++++++++++++-----------
inst/doc/plots/plot_minPtest1_object1.pdf |binary
inst/doc/plots/plot_minPtest2_object2.pdf |binary
inst/doc/vignette.Snw | 15 +-
inst/doc/vignette.pdf |binary
man/plot.minPtest.Rd | 45 ++++----
10 files changed, 190 insertions(+), 126 deletions(-)
Title: Goodness-of-fit functions for comparison of simulated and
observed hydrological time series
Diff between hydroGOF versions 0.3-2 dated 2011-10-08 and 0.3-3 dated 2012-05-02
Description: S3 functions implementing both statistical and graphical
goodness-of-fit measures between observed and simulated values,
mainly oriented to be used during the calibration, validation,
and application of hydrological models. Missing values in
observed and/or simulated values can removed before the
computations. Comments / questions / collaboration of any kind
are very welcomed.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
Maintainer: Mauricio Zambrano Bigiarini
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
NEWS | 6 ++++++
R/plot2.R | 3 ++-
inst/doc/hydroGOF_Vignette.pdf |binary
man/br2.Rd | 14 ++++++++++----
man/d.Rd | 2 +-
man/ggof.Rd | 12 +++++++-----
man/gof.Rd | 21 +++++++++++++++++----
man/hydroGOF-package.Rd | 23 +++++++++++++----------
10 files changed, 69 insertions(+), 38 deletions(-)
Title: A graphical user interface for the tabplot package
Diff between tabplotGTK versions 0.5-1 dated 2011-11-30 and 0.5-2 dated 2012-05-02
Description: This package offers a GTK graphical user interface for the
creation of tableplots with the tabplot package.
Author: Martijn Tennekes and Edwin de Jonge
Maintainer: Martijn Tennekes
DESCRIPTION | 15 +++++++--------
MD5 | 13 +++++++------
NEWS |only
R/pkg.R | 5 +++--
R/tableGUI_n2f_handlers.r | 21 +++++++++++++++++----
R/tableGUI_save_layout.R | 2 +-
man/tableGUI.Rd | 18 ++++++++++++------
man/tabplotGTK-package.Rd | 6 ++++--
8 files changed, 51 insertions(+), 29 deletions(-)
Title: Tableplot, a visualization of large datasets
Diff between tabplot versions 0.11-1 dated 2011-11-30 and 0.11-2 dated 2012-05-02
Description: A tableplot is a visualisation of a (large) dataset with a
dozen of variables, both numeric and categorical. Each column
represents a variable and each row bin is an aggregate of a
certain number of records. Numeric variables are visualized as
bar charts, and categorical variables as stacked bar charts.
Missing values are taken into account. Also supports large ffdf
datasets from the ff package.
Author: Martijn Tennekes and Edwin de Jonge
Maintainer: Martijn Tennekes
tabplot-0.11-1/tabplot/inst/doc/Sweave.sty |only
tabplot-0.11-1/tabplot/inst/doc/algorithmic.sty |only
tabplot-0.11-1/tabplot/inst/doc/algorithmicx.sty |only
tabplot-0.11-1/tabplot/inst/doc/algpseudocode.sty |only
tabplot-0.11-1/tabplot/inst/doc/enumitem.sty |only
tabplot-0.11-1/tabplot/inst/doc/threeparttable.sty |only
tabplot-0.11-1/tabplot/inst/tests |only
tabplot-0.11-2/tabplot/DESCRIPTION | 23 ++++-----
tabplot-0.11-2/tabplot/MD5 | 46 +++++++++----------
tabplot-0.11-2/tabplot/NEWS |only
tabplot-0.11-2/tabplot/R/pkg.R | 7 +-
tabplot-0.11-2/tabplot/R/plot_tabplot.r | 2
tabplot-0.11-2/tabplot/R/preprocess.ffdf.R | 11 ++--
tabplot-0.11-2/tabplot/R/sysdata.rda |binary
tabplot-0.11-2/tabplot/R/tableSave.R | 14 ++---
tabplot-0.11-2/tabplot/R/tableplot.R | 1
tabplot-0.11-2/tabplot/inst/doc/tabplot-vignette.Rnw | 26 +++++++++-
tabplot-0.11-2/tabplot/inst/doc/tabplot-vignette.pdf |binary
tabplot-0.11-2/tabplot/man/num2fac.Rd | 4 -
tabplot-0.11-2/tabplot/man/plot.tabplot.Rd | 8 +--
tabplot-0.11-2/tabplot/man/summary.tabplot.Rd | 4 -
tabplot-0.11-2/tabplot/man/tableChange.Rd | 7 +-
tabplot-0.11-2/tabplot/man/tableSave.Rd | 28 ++++++-----
tabplot-0.11-2/tabplot/man/tableplot.Rd | 10 ++--
tabplot-0.11-2/tabplot/man/tabplot-package.Rd | 8 ++-
tabplot-0.11-2/tabplot/vignettes |only
26 files changed, 113 insertions(+), 86 deletions(-)
Title: classes and methods for spatial data
Diff between sp versions 0.9-98 dated 2012-03-27 and 0.9-99 dated 2012-05-02
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location
information resides, for 2D or 3D data. Utility functions are
provided, e.g. for plotting data as maps, spatial selection, as
well as methods for retrieving coordinates, for subsetting,
print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut]
Maintainer: Edzer Pebesma
sp-0.9-98/sp/inst/external/.RData |only
sp-0.9-99/sp/ChangeLog |only
sp-0.9-99/sp/DESCRIPTION | 17 +--
sp-0.9-99/sp/MD5 | 48 ++++----
sp-0.9-99/sp/NAMESPACE | 4
sp-0.9-99/sp/R/AAA.R | 2
sp-0.9-99/sp/R/SpatialPolygons-displayMethods.R | 4
sp-0.9-99/sp/R/SpatialPolygons-methods.R | 4
sp-0.9-99/sp/R/SpatialPolygonsDataFrame-methods.R | 11 ++
sp-0.9-99/sp/R/gridlines.R | 5
sp-0.9-99/sp/R/projected.R | 7 +
sp-0.9-99/sp/R/spOptions.R | 12 ++
sp-0.9-99/sp/R/spplot.R | 4
sp-0.9-99/sp/demo/depend.R | 2
sp-0.9-99/sp/inst/ChangeLog | 119 ++++++++++++++++++++++
sp-0.9-99/sp/inst/doc/intro_sp.pdf |binary
sp-0.9-99/sp/inst/doc/over.pdf |binary
sp-0.9-99/sp/inst/doc/sp.pdf |only
sp-0.9-99/sp/man/Polygons-class.Rd | 2
sp-0.9-99/sp/man/SpatialPolygons-class.Rd | 24 ++++
sp-0.9-99/sp/man/is.projected.Rd | 8 +
sp-0.9-99/sp/man/over.Rd | 13 +-
sp-0.9-99/sp/man/panel.Rd | 11 +-
sp-0.9-99/sp/tests/grid.Rout.save | 33 ++----
sp-0.9-99/sp/tests/pass1.Rout.save | 14 +-
sp-0.9-99/sp/tests/sp1.Rout.save | 10 +
sp-0.9-99/sp/tests/zerodist.Rout.save | 9 +
27 files changed, 279 insertions(+), 84 deletions(-)
Title: statconn: provides portable C-style interface to R
(StatConnector)
Diff between rscproxy versions 2.0-1 dated 2012-04-25 and 2.0-5 dated 2012-05-02
Description: rscproxy library provides an interface to R used by third
party applications, most notable, but not limited to,
statconnDCOM, ROOo and other systems.
Author: Thomas Baier
Maintainer: Thomas Baier
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
inst/include/bdx.h | 2 ++
src/bdx_util.c | 6 ++++++
src/rproxy_dev.c | 4 ++--
src/rproxy_impl.c | 7 +++++++
6 files changed, 26 insertions(+), 11 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Diff between rgeos versions 0.2-5 dated 2012-03-17 and 0.2-6 dated 2012-05-02
Description: Interface to Geometry Engine - Open Source (GEOS) using
the C API for topology operations on geometries. The GEOS
library is external to the package, and, when installing the
package from source, must be correctly installed first. Windows
binaries are provided on CRAN. Mac Intel OS X binaries are not
provided on CRAN, but can be installed from the CRAN Extras
repository with: setRepositories(ind=1:2);
install.packages('rgeos').
Author: Roger Bivand and Colin Rundel
Maintainer: Roger Bivand
rgeos-0.2-5/rgeos/configure.in |only
rgeos-0.2-5/rgeos/src/symbols.rds |only
rgeos-0.2-6/rgeos/ChangeLog | 68
rgeos-0.2-6/rgeos/DESCRIPTION | 12
rgeos-0.2-6/rgeos/MD5 | 37
rgeos-0.2-6/rgeos/R/AAA.R | 1
rgeos-0.2-6/rgeos/R/rgeos_misc.R | 2
rgeos-0.2-6/rgeos/R/rgeos_predicate_binary.R | 6
rgeos-0.2-6/rgeos/R/rgeos_predicate_unary.R | 2
rgeos-0.2-6/rgeos/R/rgeos_topology.R | 10
rgeos-0.2-6/rgeos/R/rgeos_topology_binary.R | 4
rgeos-0.2-6/rgeos/R/rgeos_util.R | 11
rgeos-0.2-6/rgeos/configure | 1867 +++++++++-
rgeos-0.2-6/rgeos/configure.ac |only
rgeos-0.2-6/rgeos/inst/ChangeLog | 68
rgeos-0.2-6/rgeos/inst/SVN_VERSION | 2
rgeos-0.2-6/rgeos/inst/tests/test-translate-polygon-collection.R | 39
rgeos-0.2-6/rgeos/inst/tests/test-translate-polygons.R | 18
rgeos-0.2-6/rgeos/src/Makevars | 4
rgeos-0.2-6/rgeos/src/Makevars.in | 2
rgeos-0.2-6/rgeos/src/rgeos_geos2R.c | 7
21 files changed, 2051 insertions(+), 109 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.7-8 dated 2012-01-18 and 0.7-10 dated 2012-05-02
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.6.0) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows binaries (including GDAL, PROJ.4 and Expat) are
provided on CRAN. Mac Intel OS X binaries (including GDAL,
PROJ.4 and Expat) are not provided on CRAN, but can be
installed from the CRAN Extras repository with:
setRepositories(ind=1:2); install.packages('rgdal').
Author: Timothy H. Keitt
Maintainer: Roger Bivand
rgdal-0.7-10/rgdal/ChangeLog | 75
rgdal-0.7-10/rgdal/DESCRIPTION | 14
rgdal-0.7-10/rgdal/MD5 | 26
rgdal-0.7-10/rgdal/R/ogr_sp.R | 25
rgdal-0.7-10/rgdal/R/ogr_write.R | 7
rgdal-0.7-10/rgdal/configure | 5509 ++++++++++++++++------------------
rgdal-0.7-10/rgdal/configure.ac |only
rgdal-0.7-10/rgdal/inst/ChangeLog | 75
rgdal-0.7-10/rgdal/man/readOGR.Rd | 3
rgdal-0.7-10/rgdal/src/Makevars.in | 2
rgdal-0.7-10/rgdal/src/local_stubs.c | 2
rgdal-0.7-10/rgdal/src/ogr_geom.cpp | 44
rgdal-0.7-10/rgdal/src/ogr_polygons.c | 4
rgdal-0.7-10/rgdal/src/rgdal.h | 1
rgdal-0.7-8/rgdal/configure.in |only
15 files changed, 2918 insertions(+), 2869 deletions(-)
Title: Multivariate Partial Mantel Correlogram
Diff between mpmcorrelogram versions 0.1-1 dated 2011-10-27 and 0.1-2 dated 2012-05-02
More information about mpmcorrelogram at CRAN
Description: Functions to compute and plot multivariate (partial)
Mantel correlograms.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz
DESCRIPTION | 8 ++++----
INDEX |only
MD5 | 8 +++++---
NAMESPACE |only
R/mpmcorrelogram.R | 9 +++++++--
inst/CITATION | 14 +++++++-------
6 files changed, 23 insertions(+), 16 deletions(-)
Permanent link
Title: Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
Diff between LEAPFrOG versions 1.0.3 dated 2012-03-28 and 1.0.4 dated 2012-05-02
Description: Contains LEAPFrOG Gradient Optimisation and Expectation
Maximisation functions for inferring parental admixture
proportions from an offspring with SNP genotypes.
Author: Daniel JM Crouch & Michael E Weale
Maintainer: Daniel JM Crouch
DESCRIPTION | 9 +++++----
LEAPFrOG.zip |binary
MD5 | 8 ++++----
R/LEAPFrOG.R | 9 ++++++---
man/BEAPFrOG.Rd | 5 +++--
5 files changed, 18 insertions(+), 13 deletions(-)
Title: L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Diff between lassoshooting versions 0.1.4-4 dated 2011-10-04 and 0.1.5-1 dated 2012-05-02
Description: L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting is fast. This
implementation can choose which coefficients to penalize. It
support coefficient-specific penalities and it can take X'X and
X'y instead of X and y.
Author: Tobias Abenius
Maintainer: Tobias Abenius
lassoshooting-0.1.4-4/lassoshooting/INDEX |only
lassoshooting-0.1.5-1/lassoshooting/ChangeLog | 4
lassoshooting-0.1.5-1/lassoshooting/DESCRIPTION | 8 -
lassoshooting-0.1.5-1/lassoshooting/MD5 | 18 ++-
lassoshooting-0.1.5-1/lassoshooting/NAMESPACE | 1
lassoshooting-0.1.5-1/lassoshooting/R/lassoshooting.R | 3
lassoshooting-0.1.5-1/lassoshooting/inst |only
lassoshooting-0.1.5-1/lassoshooting/man/softthresh.Rd |only
lassoshooting-0.1.5-1/lassoshooting/src/ccd.h | 19 ++++
lassoshooting-0.1.5-1/lassoshooting/src/ccd_common.c | 45 ++++++---
lassoshooting-0.1.5-1/lassoshooting/src/ccd_r.c | 78 ++++++++---------
lassoshooting-0.1.5-1/lassoshooting/src/softthresh_r.c |only
12 files changed, 111 insertions(+), 65 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-29 1.1
2012-04-15 1.0
Title: GUI Tool for Data Management like SPSS or Stata
Diff between Rz versions 0.3-8 dated 2012-02-06 and 0.4-0 dated 2012-05-02
Description: R is very powerfull but not enough for social science
becouse of lack in some functionality for managing survey data
SPSS or Stata provides. Memisc package supplements these,
variable labels, value labels, definable missing values and so
on, but to efficiently work these functions need graphical
interface to overlook data. This package provides such
graphical interface similar to SPSS's Variable View and data
managing system using memisc package as backend. Additionally,
Rz has powerful plot assistant interface based on ggplot2.
Author: Masahiro Hayashi
Maintainer: Masahiro Hayashi
Rz-0.3-8/Rz/inst/images/error.png |only
Rz-0.3-8/Rz/inst/images/num.png |only
Rz-0.3-8/Rz/inst/po/rz.pot |only
Rz-0.4-0/Rz/DESCRIPTION | 17
Rz-0.4-0/Rz/LICENSE | 6
Rz-0.4-0/Rz/MD5 | 238 +++++-
Rz-0.4-0/Rz/NEWS | 25
Rz-0.4-0/Rz/R/RzActionGroup.R | 64 +
Rz-0.4-0/Rz/R/RzCompletionCombo.R |only
Rz-0.4-0/Rz/R/RzData.R | 36
Rz-0.4-0/Rz/R/RzDataHandler.R | 2
Rz-0.4-0/Rz/R/RzDataSetIO.R | 622 ++++++++-------
Rz-0.4-0/Rz/R/RzMain.R | 786 ++++++++++----------
Rz-0.4-0/Rz/R/RzMenu.R | 58 -
Rz-0.4-0/Rz/R/RzPlot.R | 350 +++++++-
Rz-0.4-0/Rz/R/RzPlotFacet.R | 64 -
Rz-0.4-0/Rz/R/RzPlotGeom.R | 99 +-
Rz-0.4-0/Rz/R/RzPlotLabel.R | 9
Rz-0.4-0/Rz/R/RzPlotMisc.R |only
Rz-0.4-0/Rz/R/RzPlotPosition.R | 11
Rz-0.4-0/Rz/R/RzPlotSave.R | 20
Rz-0.4-0/Rz/R/RzPlotStat.R | 158 ++--
Rz-0.4-0/Rz/R/RzPlotStratum.R | 273 ++++--
Rz-0.4-0/Rz/R/RzSearchEntry.R | 8
Rz-0.4-0/Rz/R/RzSettings.R | 428 +++++-----
Rz-0.4-0/Rz/R/RzVariableEditorView.R | 50 -
Rz-0.4-0/Rz/R/RzVariableView.R | 283 +++++--
Rz-0.4-0/Rz/R/functions.R | 302 +++----
Rz-0.4-0/Rz/R/zzz.R | 48 -
Rz-0.4-0/Rz/README |only
Rz-0.4-0/Rz/inst/images/accept.png |only
Rz-0.4-0/Rz/inst/images/cross.png |only
Rz-0.4-0/Rz/inst/images/interval.png |only
Rz-0.4-0/Rz/inst/images/mouse.png |only
Rz-0.4-0/Rz/inst/images/palette |only
Rz-0.4-0/Rz/inst/images/ratio.png |only
Rz-0.4-0/Rz/inst/images/table_add.png |only
Rz-0.4-0/Rz/inst/images/table_delete.png |only
Rz-0.4-0/Rz/inst/images/table_refresh.png |only
Rz-0.4-0/Rz/inst/images/table_row_delete.png |only
Rz-0.4-0/Rz/inst/images/table_row_insert.png |only
Rz-0.4-0/Rz/inst/images/tick.png |only
Rz-0.4-0/Rz/inst/po/Rz.pot |only
Rz-0.4-0/Rz/inst/po/ja/LC_MESSAGES/Rz.mo |binary
Rz-0.4-0/Rz/inst/po/ja/LC_MESSAGES/Rz.po | 119 ++-
Rz-0.4-0/Rz/inst/themes/Default/gtk-2.0-key/key.txt | 22
Rz-0.4-0/Rz/inst/themes/kde42-oxygen |only
Rz-0.4-0/Rz/inst/ui/menu.ui | 16
Rz-0.4-0/Rz/man/Rz-package.Rd | 40 -
49 files changed, 2562 insertions(+), 1592 deletions(-)
Title: Empirical likelihood ratio for censored/truncated data
Diff between emplik versions 0.9-8 dated 2012-04-29 and 0.9-8-2 dated 2012-05-02
Description: empirical likelihood ratio tests for
means/quantiles/hazards from possibly censored and/or truncated
data. Now does regression too.
Author: Mai Zhou. (Art Owen for el.test())
Maintainer: Mai Zhou
DESCRIPTION | 6 +++---
MD5 | 4 ++--
NAMESPACE | 5 ++++-
3 files changed, 9 insertions(+), 6 deletions(-)
Title: T-distributed Stochastic Neighbor Embedding for R (t-SNE)
Diff between tsne versions 0.1-1 dated 2010-02-21 and 0.1-2 dated 2012-05-02
Description: A "pure R" implementation of the t-SNE algorithm.
Author: Justin Donaldson
Maintainer: Justin Donaldson
DESCRIPTION | 10 +++---
MD5 |only
NEWS | 3 +
R/tsne-internal.R | 16 ++++++----
R/tsne.R | 82 +++++++++++++++++++++++++++++-----------------------
man/tsne-package.Rd | 1
man/tsne.Rd | 15 +++++----
7 files changed, 73 insertions(+), 54 deletions(-)
Title: Intermediate the communication between Vim and R
Diff between vimcom versions 0.9-0 dated 2012-02-16 and 0.9-2 dated 2012-05-02
Description: Provide a service to intermediate the communication
between Vim and R.
Author: Jakson Aquino
Maintainer: Jakson Alves de Aquino
vimcom-0.9-0/vimcom/R/vimSweave.R |only
vimcom-0.9-0/vimcom/man/vim.Sweave.Rd |only
vimcom-0.9-2/vimcom/DESCRIPTION | 9
vimcom-0.9-2/vimcom/MD5 | 24 +-
vimcom-0.9-2/vimcom/NAMESPACE | 2
vimcom-0.9-2/vimcom/NEWS | 12 +
vimcom-0.9-2/vimcom/R/specialfuns.R | 97 ++++++++
vimcom-0.9-2/vimcom/R/vimbol.R | 274 ++++++++++++------------
vimcom-0.9-2/vimcom/R/viminterlace.R |only
vimcom-0.9-2/vimcom/R/vimsrcdir.R |only
vimcom-0.9-2/vimcom/README |only
vimcom-0.9-2/vimcom/man/vim.bol.Rd | 6
vimcom-0.9-2/vimcom/man/vim.interlace.Rd |only
vimcom-0.9-2/vimcom/man/vim.names.Rd |only
vimcom-0.9-2/vimcom/man/vim.srcdir.Rd |only
vimcom-0.9-2/vimcom/man/vimcom-package.Rd | 10
vimcom-0.9-2/vimcom/src/vimcom.c | 335 ++++++++++++++++++++----------
17 files changed, 501 insertions(+), 268 deletions(-)
Title: Time Series Factor Analysis
Diff between tsfa versions 2011.11-1 dated 2011-11-03 and 2012.4-1 dated 2012-05-02
Description: Extraction of Factors from Multivariate Time Series. See
?00tsfa-Intro for more details.
Author: Paul Gilbert and Erik Meijer
Maintainer: Paul Gilbert and Erik Meijer
tsfa-2011.11-1/tsfa/LICENSE |only
tsfa-2012.4-1/tsfa/DESCRIPTION | 18 +++++++++++-------
tsfa-2012.4-1/tsfa/MD5 | 12 ++++++------
tsfa-2012.4-1/tsfa/NAMESPACE | 1 +
tsfa-2012.4-1/tsfa/NEWS | 17 +++++++++++------
tsfa-2012.4-1/tsfa/inst/doc/Guide.pdf |binary
tsfa-2012.4-1/tsfa/man/tframeMethods.Rd | 2 +-
tsfa-2012.4-1/tsfa/vignettes |only
8 files changed, 30 insertions(+), 20 deletions(-)
Title: Time Frame coding kernel extensions
Diff between tframePlus versions 2011.11-2 dated 2011-11-28 and 2012.4-2 dated 2012-05-02
Description: Extensions and additional tframe utilities.
Author: Paul Gilbert
Maintainer: Paul Gilbert
tframePlus-2011.11-2/tframePlus/LICENSE |only
tframePlus-2012.4-2/tframePlus/DESCRIPTION | 16 ++++++++-------
tframePlus-2012.4-2/tframePlus/MD5 | 21 +++++++++-----------
tframePlus-2012.4-2/tframePlus/NEWS | 16 +++++++++++++--
tframePlus-2012.4-2/tframePlus/R/xts.R | 5 +++-
tframePlus-2012.4-2/tframePlus/R/zoo.R | 5 +++-
tframePlus-2012.4-2/tframePlus/man/rollAggregate.Rd | 1
tframePlus-2012.4-2/tframePlus/tests/its.R | 1
tframePlus-2012.4-2/tframePlus/tests/timeSeries.R | 1
tframePlus-2012.4-2/tframePlus/tests/tis.R | 1
tframePlus-2012.4-2/tframePlus/tests/xts.R | 1
tframePlus-2012.4-2/tframePlus/tests/zoo.R | 1
12 files changed, 47 insertions(+), 22 deletions(-)
Title: Time Frame coding kernel
Diff between tframe versions 2012.3-1 dated 2012-03-27 and 2012.4-2 dated 2012-05-02
Description: The tframe package provides a kernel of functions for
programming time series methods in a way that is relatively
independently of the representation of time. It also provides
plotting, time windowing, and some other utility functions
which are specifically intended for time series. See the Guide
distributed as a vignette, or ?tframe.Intro for more details.
(User utilities other than the programming kernal have been
moved into package tfplot.)
Author: Paul Gilbert
Maintainer: Paul Gilbert
tframe-2012.3-1/tframe/LICENSE |only
tframe-2012.3-1/tframe/man/addDate.Rd |only
tframe-2012.3-1/tframe/man/diffLog.Rd |only
tframe-2012.3-1/tframe/man/percentChange.Rd |only
tframe-2012.3-1/tframe/man/tfplot.Rd |only
tframe-2012.3-1/tframe/man/tsScan.Rd |only
tframe-2012.3-1/tframe/tests/utils.R |only
tframe-2012.4-2/tframe/DESCRIPTION | 13 -
tframe-2012.4-2/tframe/MD5 | 25 --
tframe-2012.4-2/tframe/NAMESPACE | 22 --
tframe-2012.4-2/tframe/NEWS | 12 +
tframe-2012.4-2/tframe/R/tframe.R | 247 ---------------------------
tframe-2012.4-2/tframe/inst/doc/Guide.Stex | 49 ++---
tframe-2012.4-2/tframe/man/00tframe.Intro.Rd | 16 -
tframe-2012.4-2/tframe/man/tfprint.Rd | 2
tframe-2012.4-2/tframe/tests/tframe.R | 7
tframe-2012.4-2/tframe/vignettes/Guide.Stex | 49 ++---
17 files changed, 83 insertions(+), 359 deletions(-)
Title: Tcl/Tk Additions
Diff between tcltk2 versions 1.2-1 dated 2012-04-01 and 1.2-3 dated 2012-05-02
Description: A series of additional Tcl commands and Tk widgets with
style and various functions (under Windows: DDE exchange,
access to the registry and icon manipulation) to supplement the
tcltk package
Author: Philippe Grosjean
Maintainer: Philippe Grosjean
tcltk2-1.2-1/tcltk2/cleanup.win |only
tcltk2-1.2-1/tcltk2/configure.win |only
tcltk2-1.2-1/tcltk2/inst/tklibs/tablelist5.5/demos |only
tcltk2-1.2-1/tcltk2/inst/tklibs/tablelist5.5/doc |only
tcltk2-1.2-1/tcltk2/tcltk2_tk2icoReplacement.R |only
tcltk2-1.2-1/tcltk2/win |only
tcltk2-1.2-3/tcltk2/DESCRIPTION | 10
tcltk2-1.2-3/tcltk2/MD5 | 107 --
tcltk2-1.2-3/tcltk2/NAMESPACE | 3
tcltk2-1.2-3/tcltk2/NEWS | 25
tcltk2-1.2-3/tcltk2/R/tcltk2-Internal.R | 112 +-
tcltk2-1.2-3/tcltk2/R/tk2ico.R | 613 ++++++++++------
tcltk2-1.2-3/tcltk2/inst/tklibs/tablelist5.5/README.txt | 7
tcltk2-1.2-3/tcltk2/man/tcltk2-package.Rd | 4
tcltk2-1.2-3/tcltk2/man/unix/tk2ico.Rd | 36
tcltk2-1.2-3/tcltk2/man/windows/tk2ico.Rd | 106 +-
tcltk2-1.2-3/tcltk2/test.R | 2
17 files changed, 584 insertions(+), 441 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 1.9-82 dated 2012-04-06 and 1.9-92 dated 2012-05-02
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions and processing of very large files is
supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
raster-1.9-82/raster/R/layers.R |only
raster-1.9-82/raster/R/obsolete.R |only
raster-1.9-92/raster/ChangeLog | 15
raster-1.9-92/raster/DESCRIPTION | 12
raster-1.9-92/raster/MD5 | 117 +++----
raster-1.9-92/raster/R/cellStats.R | 441 +++++++++++++++++++--------
raster-1.9-92/raster/R/coerce.R | 60 ++-
raster-1.9-92/raster/R/crop.R | 7
raster-1.9-92/raster/R/crosstab.R | 75 +++-
raster-1.9-92/raster/R/depracated.R | 2
raster-1.9-92/raster/R/extract.R | 64 +--
raster-1.9-92/raster/R/extractLines.R | 6
raster-1.9-92/raster/R/extractPoints.R | 39 +-
raster-1.9-92/raster/R/extractPolygons.R | 8
raster-1.9-92/raster/R/getValuesBlock.R | 82 ++---
raster-1.9-92/raster/R/image.R | 13
raster-1.9-92/raster/R/kml.R | 10
raster-1.9-92/raster/R/kml_multiple.R | 4
raster-1.9-92/raster/R/layerNames.R | 18 -
raster-1.9-92/raster/R/layerStats.R |only
raster-1.9-92/raster/R/merge.R | 61 ++-
raster-1.9-92/raster/R/mosaic.R | 50 +--
raster-1.9-92/raster/R/netCDFtoRasterCD.R | 4
raster-1.9-92/raster/R/nlayers.R |only
raster-1.9-92/raster/R/optionsSet.R | 3
raster-1.9-92/raster/R/overlay.R | 39 +-
raster-1.9-92/raster/R/plot.R | 2
raster-1.9-92/raster/R/predict.R | 11
raster-1.9-92/raster/R/print.R |only
raster-1.9-92/raster/R/projection.R | 8
raster-1.9-92/raster/R/rasterFromASCII.R | 26 +
raster-1.9-92/raster/R/rasterize.R | 2
raster-1.9-92/raster/R/rasterizePolygons.R | 77 ++--
raster-1.9-92/raster/R/readAscii.R | 10
raster-1.9-92/raster/R/readRasterLayer.R | 16
raster-1.9-92/raster/R/show.R | 59 +--
raster-1.9-92/raster/R/stack.R | 8
raster-1.9-92/raster/R/stackFile.R | 52 ++-
raster-1.9-92/raster/R/stackQuick.R | 21 +
raster-1.9-92/raster/R/stretch.R | 83 ++++-
raster-1.9-92/raster/R/weighted.mean.R |only
raster-1.9-92/raster/R/writeStartStopGDAL.R | 59 +--
raster-1.9-92/raster/R/writeValues.R | 6
raster-1.9-92/raster/R/xyValuesBuffer.R | 40 +-
raster-1.9-92/raster/R/zzz.R | 8
raster-1.9-92/raster/inst/doc/Raster.pdf |binary
raster-1.9-92/raster/inst/doc/functions.pdf |binary
raster-1.9-92/raster/inst/doc/rasterfile.pdf |binary
raster-1.9-92/raster/man/KML.Rd | 25 -
raster-1.9-92/raster/man/Raster-classes.Rd | 1
raster-1.9-92/raster/man/cellStats.Rd | 20 -
raster-1.9-92/raster/man/crop.Rd | 8
raster-1.9-92/raster/man/crosstab.Rd | 44 +-
raster-1.9-92/raster/man/extract.Rd | 50 ---
raster-1.9-92/raster/man/layerNames.Rd |only
raster-1.9-92/raster/man/layerStats.Rd |only
raster-1.9-92/raster/man/merge.Rd | 19 -
raster-1.9-92/raster/man/mosaic.Rd | 32 -
raster-1.9-92/raster/man/nlayers.Rd | 25 -
raster-1.9-92/raster/man/overlay.Rd | 10
raster-1.9-92/raster/man/projection.Rd | 1
raster-1.9-92/raster/man/raster-package.Rd | 6
raster-1.9-92/raster/man/rasterize.Rd | 13
raster-1.9-92/raster/man/weighted.mean.Rd |only
64 files changed, 1098 insertions(+), 774 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Diff between psych versions 1.2.1 dated 2012-02-16 and 1.2.4 dated 2012-05-02
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Item Response Theory is done using factor analysis
of tetrachoric and polychoric correlations. Functions for
simulating particular item and test structures are included.
Several functions serve as a useful front end for structural
equation modeling. Graphical displays of path diagrams, factor
analysis and structural equation models are created using basic
graphics. Some of the functions are written to support a book
on psychometrics as well as publications in personality
research. For more information, see the
personality-project.org/r webpage.
Author: William Revelle
Maintainer: William Revelle
DESCRIPTION | 8
MD5 | 76 ++++----
NAMESPACE | 9 -
R/ICLUST.R | 2
R/ICLUST.diagram.R | 2
R/corr.test.R | 4
R/cosiner.R | 2
R/describe.R | 10 -
R/describe.by.R | 2
R/diagram.R | 9 -
R/fa.R | 6
R/fa.diagram.R | 24 +-
R/fa.graph.R | 148 ++++++----------
R/fa.rgraph.R |only
R/lavaan.diagram.R | 6
R/misc.R | 8
R/mixed.cor.R | 13 -
R/pairs.panels.R | 423 ++++++++++++++++++++++++------------------------
R/polychoric.R | 25 +-
R/predict.principal.R | 9 -
R/print.psych.R | 11 -
R/skew.R | 49 +++--
inst/CITATION | 8
inst/NEWS.Rd | 38 +++-
man/00.psych-package.Rd | 4
man/ICLUST.Rd | 37 +---
man/ICLUST.graph.Rd | 5
man/corr.test.Rd | 12 -
man/cosinor.Rd | 8
man/describe.Rd | 16 +
man/describe.by.Rd | 5
man/fa.Rd | 15 -
man/fa.diagram.Rd | 26 ++
man/misc.Rd | 24 +-
man/mixed.cor.Rd | 13 +
man/pairs.panels.Rd | 10 -
man/predict.psych.Rd | 16 +
man/r.test.Rd | 5
man/skew.Rd | 32 ++-
rmssd.R |only
40 files changed, 637 insertions(+), 483 deletions(-)
Title: Representing and exploring data through sound
Diff between playitbyr versions 0.1-1 dated 2011-07-23 and 0.2-0 dated 2012-05-02
Description: playitbyr is a flexible toolkit for data sonification,
with syntax modeled after the ggplot2 package. The functions
allow the user to map data onto sonic parameters like pitch,
tempo, and rhythm, and output sound and sound files.
Author: Ethan Brown
Maintainer: Ethan Brown
playitbyr-0.1-1/playitbyr/R/Rrender.R |only
playitbyr-0.1-1/playitbyr/man/checksonify.Rd |only
playitbyr-0.1-1/playitbyr/man/getplayer.Rd |only
playitbyr-0.1-1/playitbyr/man/internaldf.Rd |only
playitbyr-0.1-1/playitbyr/man/internalrender.Rd |only
playitbyr-0.1-1/playitbyr/man/octtofreq.Rd |only
playitbyr-0.1-1/playitbyr/man/playlastrendering.Rd |only
playitbyr-0.1-1/playitbyr/man/scaleshortcuts.Rd |only
playitbyr-0.1-1/playitbyr/man/sonifyclass.Rd |only
playitbyr-0.2-0/playitbyr/DESCRIPTION | 44 -
playitbyr-0.2-0/playitbyr/MD5 |only
playitbyr-0.2-0/playitbyr/NAMESPACE | 79 +-
playitbyr-0.2-0/playitbyr/R/aaa.R | 45 -
playitbyr-0.2-0/playitbyr/R/add-sonify.R |only
playitbyr-0.2-0/playitbyr/R/checkSonify.R |only
playitbyr-0.2-0/playitbyr/R/expscale.R |only
playitbyr-0.2-0/playitbyr/R/getDefaultMappings.R |only
playitbyr-0.2-0/playitbyr/R/getShapeDef.R |only
playitbyr-0.2-0/playitbyr/R/getSoundParams.R |only
playitbyr-0.2-0/playitbyr/R/internaldf.R |only
playitbyr-0.2-0/playitbyr/R/internalsonify.R |only
playitbyr-0.2-0/playitbyr/R/linearscale.R |only
playitbyr-0.2-0/playitbyr/R/octToFreq.R |only
playitbyr-0.2-0/playitbyr/R/print.sonify.R |only
playitbyr-0.2-0/playitbyr/R/render.R |only
playitbyr-0.2-0/playitbyr/R/render.csound.R |only
playitbyr-0.2-0/playitbyr/R/scale-attkp-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-decayp-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-dur-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-identity.R |only
playitbyr-0.2-0/playitbyr/R/scale-indx-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-mod-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-pan-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-pitch-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-tempo-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-time-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scale-vol-continuous.R |only
playitbyr-0.2-0/playitbyr/R/scorePreprocessor.boxplot.R |only
playitbyr-0.2-0/playitbyr/R/scorePreprocessor.csound.R |only
playitbyr-0.2-0/playitbyr/R/scorePreprocessor.dotplot.R |only
playitbyr-0.2-0/playitbyr/R/scorePreprocessor.histogram.R |only
playitbyr-0.2-0/playitbyr/R/scorePreprocessor.scatter.R |only
playitbyr-0.2-0/playitbyr/R/shape-boxplot.R |only
playitbyr-0.2-0/playitbyr/R/shape-csound.R |only
playitbyr-0.2-0/playitbyr/R/shape-descriptions.R |only
playitbyr-0.2-0/playitbyr/R/shape-dotplot.R |only
playitbyr-0.2-0/playitbyr/R/shape-histogram.R |only
playitbyr-0.2-0/playitbyr/R/shape-scatter.R |only
playitbyr-0.2-0/playitbyr/R/sonaes.R |only
playitbyr-0.2-0/playitbyr/R/sonfacet.R |only
playitbyr-0.2-0/playitbyr/R/sonify.R | 424 +++--------
playitbyr-0.2-0/playitbyr/R/sonlayer.R |only
playitbyr-0.2-0/playitbyr/R/sonopts.R |only
playitbyr-0.2-0/playitbyr/R/sonsave.R |only
playitbyr-0.2-0/playitbyr/R/sonscaling.R | 116 +--
playitbyr-0.2-0/playitbyr/R/summary.sonify.R |only
playitbyr-0.2-0/playitbyr/inst |only
playitbyr-0.2-0/playitbyr/man/add-sonify.Rd |only
playitbyr-0.2-0/playitbyr/man/checkSonify.Rd |only
playitbyr-0.2-0/playitbyr/man/expscale.Rd |only
playitbyr-0.2-0/playitbyr/man/getDefaultSettings.Rd |only
playitbyr-0.2-0/playitbyr/man/getScore.Rd |only
playitbyr-0.2-0/playitbyr/man/getShapeDef.Rd |only
playitbyr-0.2-0/playitbyr/man/getSoundParams.Rd |only
playitbyr-0.2-0/playitbyr/man/internalsonify.Rd |only
playitbyr-0.2-0/playitbyr/man/linearscale.Rd | 81 +-
playitbyr-0.2-0/playitbyr/man/octToFreq.Rd |only
playitbyr-0.2-0/playitbyr/man/print.sonify.Rd |only
playitbyr-0.2-0/playitbyr/man/render.Rd | 62 -
playitbyr-0.2-0/playitbyr/man/render.csound.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_attkp_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_decayp_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_dur_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_identity.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_indx_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_mod_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_pan_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_pitch_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_tempo_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_time_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scale_vol_continuous.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.boxplot.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.csound.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.dotplot.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.histogram.Rd |only
playitbyr-0.2-0/playitbyr/man/scorePreprocessor.scatter.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_boxplot.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_csound.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_descriptions.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_dotplot.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_histogram.Rd |only
playitbyr-0.2-0/playitbyr/man/shape_scatter.Rd |only
playitbyr-0.2-0/playitbyr/man/sonaes.Rd | 103 --
playitbyr-0.2-0/playitbyr/man/sonfacet.Rd |only
playitbyr-0.2-0/playitbyr/man/sonify.Rd | 179 +++-
playitbyr-0.2-0/playitbyr/man/sonlayer.Rd |only
playitbyr-0.2-0/playitbyr/man/sonopts.Rd |only
playitbyr-0.2-0/playitbyr/man/sonsave.Rd |only
playitbyr-0.2-0/playitbyr/man/sonscaling.Rd | 85 --
playitbyr-0.2-0/playitbyr/man/summary.sonify.Rd |only
101 files changed, 555 insertions(+), 663 deletions(-)
Title: Phylogenetic Tools for comparative biology (and other things)
Diff between phytools versions 0.1-7 dated 2012-02-27 and 0.1-8 dated 2012-05-02
Description: phytools provides various functions for phylogenetic
analysis, mostly relevant to comparative biology.
Author: Liam J. Revell
Maintainer: Liam J. Revell
DESCRIPTION | 8 -
MD5 | 26 ++--
NAMESPACE | 1
R/getExtant.R |only
R/ltt.R | 143 +++++++++++++++------------
R/mcmcBM.R | 8 -
R/mcmcBM.full.R | 8 -
R/mcmcLambda.R | 12 +-
R/read.simmap.R | 278 ++++++++++++++++++++++++++++++++++++++++++++++++-----
R/treeSlice.R | 33 ++----
inst/CITATION | 2
man/getExtant.Rd |only
man/ltt.Rd | 7 -
man/read.simmap.Rd | 13 +-
man/treeSlice.Rd | 5
15 files changed, 396 insertions(+), 148 deletions(-)
Title: Retrieve Oklahoma Mesonet climatological data
Diff between okmesonet versions 0.1.1 dated 2012-04-24 and 0.1.2 dated 2012-05-02
Description: okmesonet retrieves and summarizes Oklahoma (USA) Mesonet
climatological data provided by the Oklahoma Climatological
Survey. Measurements are recorded every five minutes at
approximately 120 stations throughout Oklahoma and are
available in near real-time.
Author: Brady Allred, Torre Hovick, Samuel Fuhlendorf
Maintainer: Brady Allred
okmesonet-0.1.1/okmesonet/man/data.checkgeomeso.Rd |only
okmesonet-0.1.2/okmesonet/DESCRIPTION | 8 ++--
okmesonet-0.1.2/okmesonet/MD5 | 10 ++---
okmesonet-0.1.2/okmesonet/NEWS | 4 ++
okmesonet-0.1.2/okmesonet/R/okmesonet.R | 38 +++++++++++----------
okmesonet-0.1.2/okmesonet/data/okstations.rda |binary
okmesonet-0.1.2/okmesonet/man/data.checkgeoinfo.Rd |only
7 files changed, 34 insertions(+), 26 deletions(-)
Title: Shape Analysis of Outlines
Diff between Momocs versions 0.1 dated 2012-05-01 and 0.1-01 dated 2012-05-02
Description: Momocs is intended to ease and popularize shape analysis
of outlines (especially using elliptical Fourier analysis). It
mostly hinges on the functions developped in Morphometrics with
R (Claude, 2008). From outline extraction of images and
elliptical Fourier calculation to multivariate analysis and the
visualization of transformations within the morphological
space, Momocs provides a complete and convenient toolkit to
specialists within every field that are, or may be, interested
in morphological comparisons of outlines.
Author: Vincent Bonhomme, Sandrine Picq, Julien Claude
Maintainer: Vincent Bonhomme
DESCRIPTION | 6 +++---
MD5 | 12 ++++++------
NAMESPACE | 1 -
R/Coo.R | 13 +++++++------
R/Nef.R | 43 +++++++++++++++++++------------------------
inst/doc/Momocs-manual.pdf |binary
man/morph.PC.Rd | 7 ++-----
7 files changed, 37 insertions(+), 45 deletions(-)
Title: MVPARTwrap: Additional functionnalities for package mvpart.
Diff between MVPARTwrap versions 0.1-8 dated 2011-11-17 and 0.1-9 dated 2012-05-02
Description: The main function of this package, MRT, provides to the
following information : the proper cluster membership
allocation in the tree, the discriminant species for each
cluster, the tree nodes at the proper level of R2 (1-relative
error), the total species variance partitionned by species, by
the tree, and by the splits of the tree, plus a different
graphic representation of the final model in the form of a
tree. Moreover, the CascadeMRT function allows a cascade MRT
analysis and the CasMRTR2 function allows to illustrate the
(unadjusted) variation explained by each wave/drops. Last but
not least, the R2aGDF function permits the calculation of an
adjusted R^2 for an MRT model.
Author: Marie-Helene Ouellette
Maintainer: Marie-Helene Ouellette
DESCRIPTION | 28 +++++++++++++++++++---------
MD5 | 10 +++++-----
R/R2aGDF.R | 1 +
R/svaluecol.R | 12 ++++++------
man/help_CasMRTR2.Rd | 8 ++++----
man/help_CascadeMRT.Rd | 8 ++++----
6 files changed, 39 insertions(+), 28 deletions(-)
Title: Hierarchical Modal Clustering
Diff between Modalclust versions 0.2 dated 2010-11-30 and 0.3 dated 2012-05-02
Description: Perfroms Modal Clustering (MAC) including Hierarchical
Modal Clustering (HMAC) along with their parallel
implementation (PHMAC) over several processors. These
model-based non-parametric clustering techniques can extract
clusters in very high dimensions with arbitrary density shapes.
By default clustering is performed over several resolutions and
the results are summarized as a hierarchical tree. Associated
plot functions are also provided. There is a package vignette
that provides many examples.
Author: Surajit Ray and Yansong Cheng
Maintainer: Surajit Ray
Modalclust-0.2/Modalclust/inst/doc/modalclust1.pdf |only
Modalclust-0.3/Modalclust/DESCRIPTION | 6
Modalclust-0.3/Modalclust/MD5 |only
Modalclust-0.3/Modalclust/NAMESPACE |only
Modalclust-0.3/Modalclust/R/hard.HMAC.r | 5
Modalclust-0.3/Modalclust/R/hmacpack.r | 14 +-
Modalclust-0.3/Modalclust/R/plot.HMAC.R | 2
Modalclust-0.3/Modalclust/R/soft.HMAC.R | 5
Modalclust-0.3/Modalclust/data/disc3d.hmac.rda |binary
Modalclust-0.3/Modalclust/inst/doc/Modalclust.pdf |binary
Modalclust-0.3/Modalclust/man/soft.HMAC.Rd | 146 ++++++++++-----------
11 files changed, 91 insertions(+), 87 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 0.2.1 dated 2012-04-06 and 0.2.3 dated 2012-05-02
Description: Analysis of dichotomous and polychotomous response data
using latent trait models under the Item Response Theory
paradigm. Includes the multivariate two- and three-parameter
logistic models, confirmatory bifactor analysis, polytomous
exploratory and confirmatory item response models which may
include polynomial or product constructed factors, and
partially-compensatory item response modeling in conjunction
with other IRT models.
Author: Phil Chalmers
Maintainer: Phil Chalmers
mirt-0.2.1/mirt/.gitignore |only
mirt-0.2.1/mirt/mirt.Rproj |only
mirt-0.2.1/mirt/src/Estep.c |only
mirt-0.2.1/mirt/src/Misc.c |only
mirt-0.2.1/mirt/src/Mstep.c |only
mirt-0.2.3/mirt/DESCRIPTION | 14
mirt-0.2.3/mirt/MD5 | 63
mirt-0.2.3/mirt/NAMESPACE | 6
mirt-0.2.3/mirt/NEWS | 28
mirt-0.2.3/mirt/R/bfactor.R | 623 ++++-----
mirt-0.2.3/mirt/R/confmirt.R | 158 +-
mirt-0.2.3/mirt/R/confmirt.model.R | 4
mirt-0.2.3/mirt/R/fscores.R | 173 +-
mirt-0.2.3/mirt/R/itemplot.R | 170 --
mirt-0.2.3/mirt/R/logLik.R | 150 --
mirt-0.2.3/mirt/R/mirt-package.R | 146 +-
mirt-0.2.3/mirt/R/mirt.R | 641 ++++-----
mirt-0.2.3/mirt/R/misc.R | 1941 ++++++++++++++---------------
mirt-0.2.3/mirt/R/polymirt.R | 344 ++---
mirt-0.2.3/mirt/R/read.mirt.R |only
mirt-0.2.3/mirt/man/bfactor.Rd | 128 +
mirt-0.2.3/mirt/man/bfactorClass-class.Rd | 128 -
mirt-0.2.3/mirt/man/confmirt.Rd | 567 ++++----
mirt-0.2.3/mirt/man/confmirt.model.Rd | 5
mirt-0.2.3/mirt/man/confmirtClass-class.Rd | 135 +-
mirt-0.2.3/mirt/man/itemplot-methods.Rd | 52
mirt-0.2.3/mirt/man/mirt.Rd | 117 -
mirt-0.2.3/mirt/man/mirtClass-class.Rd | 126 -
mirt-0.2.3/mirt/man/polymirtClass-class.Rd | 126 -
mirt-0.2.3/mirt/man/read.mirt.Rd |only
mirt-0.2.3/mirt/src/Estep.cpp |only
mirt-0.2.3/mirt/src/Makevars | 28
mirt-0.2.3/mirt/src/Makevars.win |only
mirt-0.2.3/mirt/src/Misc.cpp |only
mirt-0.2.3/mirt/src/Misc.h |only
mirt-0.2.3/mirt/src/dgroup.c | 41
mirt-0.2.3/mirt/src/dichOuter.cpp |only
mirt-0.2.3/mirt/src/dparsPoly.cpp |only
mirt-0.2.3/mirt/src/drawThetas.cpp |only
mirt-0.2.3/mirt/src/loglik.cpp |only
mirt-0.2.3/mirt/src/traceLinePts.cpp |only
41 files changed, 2973 insertions(+), 2941 deletions(-)
Title: Dynamic Systems Estimation (time series package)
Diff between dse versions 2011.11-2 dated 2011-11-28 and 2012.4-1 dated 2012-05-02
Description: Package dse provides tools for multivariate, linear,
time-invariant, time series models. It includes ARMA and
state-space representations, and methods for converting between
them. It also includes simulation methods and several
estimation functions. The package has functions for looking at
model roots, stability, and forecasts at different horizons.
The ARMA model representaion is general, so that VAR, VARX,
ARIMA, ARMAX, ARIMAX can all be considered to be special cases.
Kalman filter and smoother estimates can be obtained from the
state space model, and state-space model reduction techniques
are implemented. An introduction and User's Guide is available
in a vignette.
Author: Paul Gilbert
Maintainer: Paul Gilbert
dse-2011.11-2/dse/LICENSE |only
dse-2012.4-1/dse/DESCRIPTION | 36 +++++++++++++++------------
dse-2012.4-1/dse/MD5 | 21 +++++++--------
dse-2012.4-1/dse/NAMESPACE | 1
dse-2012.4-1/dse/NEWS | 6 +++-
dse-2012.4-1/dse/data/eg1.DSE.data.diff.rda |binary
dse-2012.4-1/dse/data/eg1.DSE.data.rda |binary
dse-2012.4-1/dse/data/egJofF.1dec93.data.rda |binary
dse-2012.4-1/dse/inst/doc/Guide.pdf |binary
dse-2012.4-1/dse/man/percentChange.TSdata.Rd | 6 ++--
dse-2012.4-1/dse/man/tfplot.TSdata.Rd | 2 -
dse-2012.4-1/dse/man/tfplot.forecast.Rd | 2 -
12 files changed, 41 insertions(+), 33 deletions(-)