Title: Nonparameteric estimation of spatial segregation in a
multivariate point process
Diff between spatialkernel versions 0.4-13 dated 2012-05-03 and 0.4-14 dated 2012-05-03
Description: Edge-corrected kernel density estimation and binary kernel
regression estimation for multivariate spatial point process
data
Author: Pingping Zheng and Peter Diggle
Maintainer: Virgilio Gomez-Rubio
spatialkernel-0.4-13/spatialkernel/src/Brian |only
spatialkernel-0.4-14/spatialkernel/DESCRIPTION | 6 +++---
spatialkernel-0.4-14/spatialkernel/MD5 | 7 +++----
spatialkernel-0.4-14/spatialkernel/src/constrained.c | 1 +
spatialkernel-0.4-14/spatialkernel/src/triangle.c | 5 +++--
5 files changed, 10 insertions(+), 9 deletions(-)
Title: Various confidence interval methods for proportions
Diff between PropCIs versions 0.1-7 dated 2010-11-05 and 0.1-8 dated 2012-05-03
Description: Computes confidence intervals for single proportions and
differences of dependent and independent proportions
Author: Ralph Scherer
Maintainer: Ralph Scherer
DESCRIPTION | 15 ++++++---------
MD5 |only
NAMESPACE |only
NEWS | 6 +++++-
R/add4ci.R | 7 ++++++-
R/addz2ci.R | 10 +++++++---
R/blakerci.R | 6 +++++-
R/diffscoreci.R | 14 +++++++++-----
R/exactci.R | 10 +++++++---
R/midPci.R | 38 +++++++++++++++++++++-----------------
R/oddsratioci.mp.R | 10 +++++++---
R/orscoreci.R | 22 +++++++++++++---------
R/riskscoreci.R | 48 ++++++++++++++++++++++++++----------------------
R/scoreci.R | 18 +++++++-----------
R/scoreci.mp.R | 10 +++++++---
R/wald2ci.R | 29 +++++++++++++++++++++--------
man/PropCIs-package.Rd | 30 ++++++++++++++++--------------
man/add4ci.Rd | 5 +++--
man/addz2ci.Rd | 11 ++++++-----
man/blakerci.Rd | 4 ++--
man/diffscoreci.Rd | 8 ++++----
man/exactci.Rd | 12 ++++++------
man/midPci.Rd | 12 ++++++------
man/oddsratioci.mp.Rd | 10 +++++-----
man/orscoreci.Rd | 8 ++++----
man/riskscoreci.Rd | 10 +++++-----
man/scoreci.Rd | 8 ++++----
man/scoreci.mp.Rd | 10 +++++-----
man/wald2ci.Rd | 28 ++++++++++++++++++++--------
29 files changed, 233 insertions(+), 166 deletions(-)
Title: Meta-Analysis with R
Diff between meta versions 2.0-2 dated 2012-04-17 and 2.0-4 dated 2012-05-03
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
Author: Guido Schwarzer
Maintainer: Guido Schwarzer
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 11 +++++++++++
R/metabin.R | 2 --
R/metaprop.R | 22 ++++++++++++----------
man/metabin.Rd | 6 +++++-
man/metaprop.Rd | 4 ++++
7 files changed, 42 insertions(+), 23 deletions(-)
Title: Nonparametric Item Reponse Theory
Diff between KernSmoothIRT versions 2.0 dated 2011-12-16 and 3.0 dated 2012-05-03
Description: This package fits nonparametric item and option
characteristic curves using kernel smoothing. It allows for
optimal selection of the smoothing bandwidth using
cross-validation and a variety of exploratory plotting tools.
Author: Angelo Mazza, Antonio Punzo, Brian McGuire
Maintainer: Brian McGuire
DESCRIPTION | 13 +++---
MD5 | 37 +++++++++--------
R/Credplot.R | 114 ++++++++++++++---------------------------------------
R/CrossV.R | 3 -
R/ICCDIFplot.R | 8 +--
R/ICCplot.R | 14 ++++--
R/IICplot.R | 57 ++------------------------
R/Inputcheck.R | 6 --
R/OCCplot.R | 10 ++--
R/RelPlot.R | 15 ++++--
R/SEplot.R | 2
R/densityDIFplot.R | 10 ++--
R/densityplot.R | 8 ++-
R/getLik.R |only
R/getweight.R | 2
R/ksIRT.R | 57 +++++++++++++++++---------
R/plot.ksIRT.R | 10 ++--
R/sdplot.R | 2
data/HIV.rda |only
man/HIV.Rd |only
man/ksIRT.Rd | 82 ++++++++++++++++++++++----------------
21 files changed, 199 insertions(+), 251 deletions(-)
Title: Representing and exploring data through sound
Diff between playitbyr versions 0.2-0 dated 2012-05-02 and 0.2-1 dated 2012-05-03
Description: playitbyr is a flexible toolkit for data sonification,
with syntax modeled after the ggplot2 package. The functions
allow the user to map data onto sonic parameters like pitch,
tempo, and rhythm, and output sound and sound files.
Author: Ethan Brown
Maintainer: Ethan Brown
DESCRIPTION | 6 ++---
MD5 | 10 ++++-----
R/aaa.R | 51 ++++++++++++++++++++++++++-----------------------
R/getShapeDef.R | 7 +++---
R/getSoundParams.R | 6 ++---
R/shape-descriptions.R | 4 +--
6 files changed, 45 insertions(+), 39 deletions(-)
Title: Nonparameteric estimation of spatial segregation in a
multivariate point process
Diff between spatialkernel versions 0.4-10 dated 2011-01-17 and 0.4-13 dated 2012-05-03
Description: Edge-corrected kernel density estimation and binary kernel
regression estimation for multivariate spatial point process
data
Author: Pingping Zheng and Peter Diggle
Maintainer: Virgilio Gomez-Rubio
spatialkernel-0.4-10/spatialkernel/data/lansing.R |only
spatialkernel-0.4-10/spatialkernel/data/polyb.R |only
spatialkernel-0.4-13/spatialkernel/DESCRIPTION | 8
spatialkernel-0.4-13/spatialkernel/MD5 |only
spatialkernel-0.4-13/spatialkernel/R/filled.contour.poly.R | 8
spatialkernel-0.4-13/spatialkernel/R/kernelhat.R | 4
spatialkernel-0.4-13/spatialkernel/R/setkernel.R | 8
spatialkernel-0.4-13/spatialkernel/R/spseg.R | 4
spatialkernel-0.4-13/spatialkernel/R/zzz.R | 2
spatialkernel-0.4-13/spatialkernel/data/lansing.rda |only
spatialkernel-0.4-13/spatialkernel/data/polyb.rda |only
spatialkernel-0.4-13/spatialkernel/src/Brian |only
spatialkernel-0.4-13/spatialkernel/src/constrained.c | 33
spatialkernel-0.4-13/spatialkernel/src/gpc.c | 14
spatialkernel-0.4-13/spatialkernel/src/risk.c | 8
spatialkernel-0.4-13/spatialkernel/src/triangle.c | 2553 ++++++-------
16 files changed, 1324 insertions(+), 1318 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Diff between rgdal versions 0.7-10 dated 2012-05-02 and 0.7-11 dated 2012-05-03
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.6.0) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
Windows binaries (including GDAL, PROJ.4 and Expat) are
provided on CRAN. Mac Intel OS X binaries (including GDAL,
PROJ.4 and Expat) are not provided on CRAN, but can be
installed from the CRAN Extras repository with:
setRepositories(ind=1:2); install.packages('rgdal').
Author: Timothy H. Keitt
Maintainer: Roger Bivand
ChangeLog | 13 +++++++++++++
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
configure | 10 +++++-----
configure.ac | 6 +++---
inst/ChangeLog | 13 +++++++++++++
6 files changed, 43 insertions(+), 17 deletions(-)
Title: Time series management, analysis and interpolation for
hydrological modelling
Diff between hydroTSM versions 0.3-3 dated 2011-11-07 and 0.3-4 dated 2012-05-03
Description: S3 functions for management, analysis, interpolation and
plotting of time series used in hydrology and related
environmental sciences. In particular, this package is highly
oriented to hydrological modelling tasks. The focus of this
package has been put in providing a collection of tools useful
for the daily work of hydrologists (although an effort was made
to optimise each function as much as possible, functionality
has had priority over speed). Bugs / comments / questions /
collaboration of any kind are very welcomed, and in particular,
datasets that can be included in this package for academic
purposes.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
Maintainer: Mauricio Zambrano-Bigiarini
DESCRIPTION | 20 +++++--
MD5 | 16 +++---
NEWS | 3 +
R/fdc.R | 104 ++++++++++++++++++++++++-----------------
R/fdcu.R | 96 ++++++++++++++++++++++---------------
inst/doc/hydroTSM_Vignette.pdf |binary
man/fdc.Rd | 33 ++++++++-----
man/fdcu.Rd | 37 ++++++++++----
man/hydroTSM-package.Rd | 13 ++---
9 files changed, 200 insertions(+), 122 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-03 2.6
2011-01-25 2.5
2009-12-11 2.1-1
2008-05-02 2.1
2008-04-18 2.0-7
2008-03-21 2.0-6
2008-01-28 2.0-5
2008-01-27 2.0-4
2008-01-23 2.0-3
2008-01-19 2.0-2
2008-01-17 2.0-1
2008-01-16 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-12-04 2.4-1
2010-09-02 2.4-0
2010-04-07 2.3-0
2009-11-22 2.2-3
2009-10-28 2.2-2
2009-07-18 2.2
2008-02-29 2.1-1
2008-01-21 2.0
2007-05-01 0.7-17
Title: stellar evolution tracks and isochrones
Diff between stellaR versions 0.1-0 dated 2012-04-30 and 0.2-0 dated 2012-05-03
Description: A package to manage and display stellar tracks and
isochrones from Pisa low-mass database. Includes tools for
isochrones construction and tracks interpolation.
Author: Matteo Dell'Omodarme [aut, cre], Giada Valle [aut]
Maintainer: Matteo Dell'Omodarme
DESCRIPTION | 10 ++---
MD5 | 24 ++++++------
R/ip.R | 11 ++++-
R/stellar.R | 101 ++++++++++++++++++++++++++++++++++++++++++++++++-----
man/getHbgrid.Rd | 5 ++
man/getIso.Rd | 4 ++
man/getTrk.Rd | 6 ++-
man/getTrkSet.Rd | 6 ++-
man/getZahb.Rd | 6 ++-
man/keypoints.Rd | 6 ++-
man/plot.trk.Rd | 4 +-
man/plot.trkset.Rd | 4 +-
man/plotAstro.Rd | 4 +-
13 files changed, 154 insertions(+), 37 deletions(-)
Title: Partitioning beta diversity into turnover and nestedness
components
Diff between betapart versions 1.1 dated 2012-03-02 and 1.1-2 dated 2012-05-03
Description: betapart allows computing pair-wise dissimilarities
(distance matrices) and multiple-site dissimilarities,
separating the turnover and nestedness components of beta
diversity as described in Baselga (2010).
Author: Andres Baselga and David Orme
Maintainer: Andres Baselga
DESCRIPTION | 12 ++++++------
MD5 | 12 ++++++------
R/beta-sample.R | 21 ++++++++++++++++++++-
R/beta-temporal.R | 5 +++++
R/betapart-core.R | 4 ++--
data/bbsData.rda |binary
man/bbsData.Rd | 5 +++--
7 files changed, 42 insertions(+), 17 deletions(-)
Title: Time Series Database Interface extension to connect to zip files
Diff between TSzip versions 2011.11-2 dated 2011-11-28 and 2012.4-1 dated 2012-05-03
Description: Provides TSdbi package methods to retrieve time series
data from zipped, as if the files form a database.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSzip-2011.11-2/TSzip/LICENSE |only
TSzip-2012.4-1/TSzip/DESCRIPTION | 19 ++++++++++---------
TSzip-2012.4-1/TSzip/MD5 | 11 +++++------
TSzip-2012.4-1/TSzip/NEWS | 14 +++++++++-----
TSzip-2012.4-1/TSzip/inst/doc/Guide.pdf |binary
TSzip-2012.4-1/TSzip/man/TSdbiMethods.Rd | 1 +
TSzip-2012.4-1/TSzip/vignettes/Guide.Stex | 1 +
7 files changed, 26 insertions(+), 20 deletions(-)
Title: Time Series Database Interface extension to connect to
spreadsheets
Diff between TSxls versions 2011.11-1 dated 2011-11-02 and 2012.4-1 dated 2012-05-03
Description: Provides TSdbi package methods to retrieve time series
data from spreadsheets, pretending the spreadsheet is a
database.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSxls-2011.11-1/TSxls/LICENSE |only
TSxls-2011.11-1/TSxls/inst/doc/Guide.Stex |only
TSxls-2012.4-1/TSxls/DESCRIPTION | 18 ++++++++++--------
TSxls-2012.4-1/TSxls/MD5 | 11 +++++------
TSxls-2012.4-1/TSxls/NEWS | 12 +++++++++---
TSxls-2012.4-1/TSxls/inst/doc/Guide.pdf |binary
TSxls-2012.4-1/TSxls/man/TSdbiMethods.Rd | 1 +
TSxls-2012.4-1/TSxls/vignettes |only
8 files changed, 25 insertions(+), 17 deletions(-)
Title: Time Series Database Interface extentions for SQLite
Diff between TSSQLite versions 2012.3-1 dated 2012-03-29 and 2012.4-1 dated 2012-05-03
Description: TSSQLite provides a SQLite interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSSQLite-2012.3-1/TSSQLite/LICENSE |only
TSSQLite-2012.4-1/TSSQLite/DESCRIPTION | 16 +++++++++-------
TSSQLite-2012.4-1/TSSQLite/MD5 | 13 ++++++-------
TSSQLite-2012.4-1/TSSQLite/NEWS | 4 ++--
TSSQLite-2012.4-1/TSSQLite/R/TSdbiMethods.R | 5 -----
TSSQLite-2012.4-1/TSSQLite/inst/doc/Guide.pdf |binary
TSSQLite-2012.4-1/TSSQLite/man/TSdbiMethods.Rd | 1 +
TSSQLite-2012.4-1/TSSQLite/vignettes/Guide.Stex | 1 +
8 files changed, 19 insertions(+), 21 deletions(-)
Title: Time Series Database Interface extensions for PADI Time Series
Server
Diff between TSpadi versions 2012.3-1 dated 2012-03-21 and 2012.4-1 dated 2012-05-03
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface
(PADI) to a time series database (e.g. Fame).
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 5 +++++
R/TSdbiMethods.R | 1 +
vignettes/Guide.Stex | 1 +
5 files changed, 15 insertions(+), 8 deletions(-)
Title: Time Series Database Interface extensions for MySQL
Diff between TSMySQL versions 2012.3-1 dated 2012-03-29 and 2012.4-1 dated 2012-05-03
Description: TSMySQL provides a MySQL interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSMySQL-2012.3-1/TSMySQL/LICENSE |only
TSMySQL-2012.4-1/TSMySQL/DESCRIPTION | 14 +++++++-------
TSMySQL-2012.4-1/TSMySQL/MD5 | 13 ++++++-------
TSMySQL-2012.4-1/TSMySQL/NEWS | 9 +++++++--
TSMySQL-2012.4-1/TSMySQL/R/TSdbiMethods.R | 5 -----
TSMySQL-2012.4-1/TSMySQL/inst/doc/Guide.pdf |binary
TSMySQL-2012.4-1/TSMySQL/man/TSdbiMethods.Rd | 1 +
TSMySQL-2012.4-1/TSMySQL/vignettes/Guide.Stex | 1 +
8 files changed, 22 insertions(+), 21 deletions(-)
Title: Time Series Database Interface extensions for get.hist.quote
Diff between TShistQuote versions 2011.11-1 dated 2011-11-02 and 2012.4-1 dated 2012-05-03
Description: Provides methods for generics in the TSdbi package to
retrieve data from historical quote URLs.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TShistQuote-2011.11-1/TShistQuote/LICENSE |only
TShistQuote-2011.11-1/TShistQuote/inst/doc/Guide.Stex |only
TShistQuote-2012.4-1/TShistQuote/DESCRIPTION | 17 +++++++++--------
TShistQuote-2012.4-1/TShistQuote/MD5 | 11 +++++------
TShistQuote-2012.4-1/TShistQuote/NEWS | 5 +++++
TShistQuote-2012.4-1/TShistQuote/inst/doc/Guide.pdf |binary
TShistQuote-2012.4-1/TShistQuote/man/TSdbiMethods.Rd | 1 +
TShistQuote-2012.4-1/TShistQuote/vignettes |only
8 files changed, 20 insertions(+), 14 deletions(-)
Title: Time Series Database Interface extension to connect with
getSymbols
Diff between TSgetSymbol versions 2011.11-2 dated 2011-11-28 and 2012.4-1 dated 2012-05-03
Description: Provides methods for generics in the TSdbi package to
retrieve data with getSymbols, in particular from the Federal
Reserve FRED database.
Author: Paul Gilbert
Maintainer: Paul Gilbert
TSgetSymbol-2011.11-2/TSgetSymbol/LICENSE |only
TSgetSymbol-2012.4-1/TSgetSymbol/DESCRIPTION | 21 +++----
TSgetSymbol-2012.4-1/TSgetSymbol/MD5 | 13 ++--
TSgetSymbol-2012.4-1/TSgetSymbol/NEWS | 25 ++++++--
TSgetSymbol-2012.4-1/TSgetSymbol/R/TSdbiMethods.R | 54 ++++++++++++------
TSgetSymbol-2012.4-1/TSgetSymbol/inst/doc/Guide.pdf |binary
TSgetSymbol-2012.4-1/TSgetSymbol/man/TSdbiMethods.Rd | 26 ++++++--
TSgetSymbol-2012.4-1/TSgetSymbol/vignettes/Guide.Stex | 1
8 files changed, 91 insertions(+), 49 deletions(-)
Title: Time Series Database Interface
Diff between TSdbi versions 2012.3-1 dated 2012-03-29 and 2012.4-1 dated 2012-05-03
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. The interface, and the SQL implementations, also
handle vintages of time series data (sometime called editions
or realtime data). There is also a (not yet well tested)
mechanism to handle multilingual data documentation.
Author: Paul Gilbert
Maintainer: Paul Gilbert
DESCRIPTION | 16 ++++++++++------
MD5 | 13 +++++++------
NEWS | 17 ++++++++++++++---
R/TSdbi.R | 34 +++++++++++++++++++++++++++++-----
inst/TSsql/HistQuote.TSsql | 2 ++
inst/TSsql/TSdbi.TSsql | 1 +
man/TSdescription.Rd | 35 ++++++++++-------------------------
man/TSexists.Rd |only
8 files changed, 73 insertions(+), 45 deletions(-)
Title: Modern measures of population differentiation
Diff between mmod versions 0.2.1 dated 2012-02-03 and 0.31 dated 2012-05-03
Description: mmod provides functions for measuring population
divergence from genotypic data
Author: David Winter
Maintainer: David Winter
mmod-0.2.1/mmod/man/summarise_bootsrap.Rd |only
mmod-0.2.1/mmod/mmod_0.2.1.tar.gz |only
mmod-0.31/mmod/DESCRIPTION | 8 -
mmod-0.31/mmod/MD5 | 75 ++++++++--------
mmod-0.31/mmod/NAMESPACE | 4
mmod-0.31/mmod/NEWS | 6 +
mmod-0.31/mmod/R/D_Jost.R | 13 +-
mmod-0.31/mmod/R/Gst_Hedrick.R | 33 +++----
mmod-0.31/mmod/R/Gst_Nei.R | 18 +--
mmod-0.31/mmod/R/HsHt.R |only
mmod-0.31/mmod/R/Phi_st_Meirmans.R |only
mmod-0.31/mmod/R/chao_bootstrap.R | 13 +-
mmod-0.31/mmod/R/diff_stats.R | 62 ++++++++-----
mmod-0.31/mmod/R/diff_test.R | 21 ++--
mmod-0.31/mmod/R/dist.codom.R |only
mmod-0.31/mmod/R/harmonic_mean.R | 1
mmod-0.31/mmod/R/help.R | 21 ++--
mmod-0.31/mmod/R/jacknife_pop.R | 12 +-
mmod-0.31/mmod/R/pairwise_D.R | 1
mmod-0.31/mmod/R/pairwise_Gst_Hedrick.R | 1
mmod-0.31/mmod/R/pairwise_Gst_Nei.R | 1
mmod-0.31/mmod/R/rgenotypes.R | 37 +++++---
mmod-0.31/mmod/R/summarise_bootstrap.R | 18 +++
mmod-0.31/mmod/README.md | 45 +++------
mmod-0.31/mmod/inst/doc/mmod-demo.Rnw | 132 ++++++++++++++++++++++-------
mmod-0.31/mmod/inst/doc/mmod-demo.pdf |binary
mmod-0.31/mmod/man/D_Jost.Rd | 9 +
mmod-0.31/mmod/man/Gst_Hedrick.Rd | 19 ++--
mmod-0.31/mmod/man/Gst_Nei.Rd | 8 +
mmod-0.31/mmod/man/Phi_st_Meirmans.Rd |only
mmod-0.31/mmod/man/chao_bootstrap.Rd | 25 +++--
mmod-0.31/mmod/man/diff_stats.Rd | 37 ++++++--
mmod-0.31/mmod/man/diff_test.Rd | 24 +++--
mmod-0.31/mmod/man/dist.codom.Rd |only
mmod-0.31/mmod/man/harmonic_mean.Rd | 3
mmod-0.31/mmod/man/jacknife_populations.Rd | 11 +-
mmod-0.31/mmod/man/mmod.Rd | 25 ++---
mmod-0.31/mmod/man/pairwise_D.Rd | 3
mmod-0.31/mmod/man/pairwise_Gst_Hedrick.Rd | 3
mmod-0.31/mmod/man/pairwise_Gst_Nei.Rd | 4
mmod-0.31/mmod/man/rgenotypes.Rd | 28 ++++--
mmod-0.31/mmod/man/summarise_bootstrap.Rd |only
mmod-0.31/mmod/test/Muchi-south.gen |only
43 files changed, 466 insertions(+), 255 deletions(-)
Title: Implementing dispersal into species distribution models
Diff between MigClim versions 1.0 dated 2012-01-31 and 1.1 dated 2012-05-03
Description: Functions for implementing species dispersal into
projections of species distribution models (e.g. under climate
change scenarios).
Author: Robin Engler
Maintainer: Robin Engler
MigClim-1.0/MigClim/R/MigClim.R |only
MigClim-1.0/MigClim/data/MigClim.TestData.rda |only
MigClim-1.0/MigClim/man/MigClim.TestData.Rd |only
MigClim-1.1/MigClim/DESCRIPTION | 15
MigClim-1.1/MigClim/MD5 | 30
MigClim-1.1/MigClim/NAMESPACE | 1
MigClim-1.1/MigClim/R/MigClim.genClust.R |only
MigClim-1.1/MigClim/R/MigClim.migrate.R |only
MigClim-1.1/MigClim/R/MigClim.plot.R |only
MigClim-1.1/MigClim/R/MigClim.userGuide.R |only
MigClim-1.1/MigClim/R/MigClim.validate.R |only
MigClim-1.1/MigClim/data/MigClim.testData.rda |only
MigClim-1.1/MigClim/inst |only
MigClim-1.1/MigClim/man/MigClim.genClust.Rd | 8
MigClim-1.1/MigClim/man/MigClim.migrate.Rd | 106 +-
MigClim-1.1/MigClim/man/MigClim.plot.Rd | 4
MigClim-1.1/MigClim/man/MigClim.testData.Rd |only
MigClim-1.1/MigClim/man/MigClim.userGuide.Rd |only
MigClim-1.1/MigClim/src/file_io.c | 127 +--
MigClim-1.1/MigClim/src/migclim.h | 11
MigClim-1.1/MigClim/src/migrate.c | 1031 +++++++++++++-------------
MigClim-1.1/MigClim/src/src_cell.c | 4
22 files changed, 694 insertions(+), 643 deletions(-)
Title: Dynamic Systems Estimation - extensions
Diff between EvalEst versions 2011.11-1 dated 2011-11-03 and 2012.4-1 dated 2012-05-03
Description: EvalEst provides functions for evalating (time series)
model estimation methods. These facilitate monte carlo
experiments of repeated simulations and estimations. The
package also provides methods for looking at the distribution
of the results from these experiments, including model roots
(which are an equivalence class invariant).
Author: Paul Gilbert
Maintainer: Paul Gilbert
EvalEst-2011.11-1/EvalEst/LICENSE |only
EvalEst-2012.4-1/EvalEst/DESCRIPTION | 25 +++++++++++---------
EvalEst-2012.4-1/EvalEst/MD5 | 22 ++++++++---------
EvalEst-2012.4-1/EvalEst/NAMESPACE | 1
EvalEst-2012.4-1/EvalEst/NEWS | 6 ++++
EvalEst-2012.4-1/EvalEst/R/EvalEst.R | 9 -------
EvalEst-2012.4-1/EvalEst/inst/doc/Guide.pdf |binary
EvalEst-2012.4-1/EvalEst/man/tfplot.TSdata.ee.Rd | 5 ++--
EvalEst-2012.4-1/EvalEst/man/tfplot.coefEstEval.Rd | 2 -
EvalEst-2012.4-1/EvalEst/man/tfplot.rootsEstEval.Rd | 2 -
EvalEst-2012.4-1/EvalEst/tests/dse2tst3.R | 4 ++-
EvalEst-2012.4-1/EvalEst/tests/dse2tst4.R | 11 ++++++--
EvalEst-2012.4-1/EvalEst/vignettes |only
13 files changed, 47 insertions(+), 40 deletions(-)
Title: Analyzing Wildlife Data with Detection Error
Diff between detect versions 0.2-1 dated 2011-11-26 and 0.2-2 dated 2012-05-03
Description: The package implements models to analyze site occupancy
and count data models with detection error. Development was
funded by the Alberta Biodiversity Monitoring Institute.
Author: Peter Solymos, Monica Moreno, Subhash R Lele
Maintainer: Peter Solymos
detect-0.2-1/detect/inst/COPYING |only
detect-0.2-2/detect/DESCRIPTION | 14 +++++++-------
detect-0.2-2/detect/MD5 | 17 ++++++++---------
detect-0.2-2/detect/R/zzz.R | 2 +-
detect-0.2-2/detect/inst/ChangeLog | 3 +++
detect-0.2-2/detect/man/databu.Rd | 11 ++++++++++-
detect-0.2-2/detect/man/datocc.Rd | 2 +-
detect-0.2-2/detect/man/detect-package.Rd | 8 ++++++--
detect-0.2-2/detect/man/svabu.Rd | 9 ++++++++-
detect-0.2-2/detect/man/svocc.Rd | 2 +-
10 files changed, 45 insertions(+), 23 deletions(-)
Title: Hierarchical Models Made Easy with Data Cloning
Diff between dcmle versions 0.1-5 dated 2012-02-25 and 0.2-0 dated 2012-05-03
Description: S4 classes around infrastructure provided by the dclone
package to make package development with data cloning for
hierarchical models easy as a breeze.
Author: Peter Solymos
Maintainer: Peter Solymos
dcmle-0.1-5/dcmle/inst/COPYING |only
dcmle-0.1-5/dcmle/man/dcmle-classes.Rd |only
dcmle-0.1-5/dcmle/man/dcmle-methods.Rd |only
dcmle-0.1-5/dcmle/man/examples.Rd |only
dcmle-0.2-0/dcmle/DESCRIPTION | 14
dcmle-0.2-0/dcmle/MD5 | 51 +-
dcmle-0.2-0/dcmle/NAMESPACE | 169 +++++-
dcmle-0.2-0/dcmle/R/datatypes.R |only
dcmle-0.2-0/dcmle/R/dcmle-classes.R | 325 +++++++------
dcmle-0.2-0/dcmle/R/dcmle-graphics.R |only
dcmle-0.2-0/dcmle/R/dcmle-methods.R | 540 +++++++++++++++++++---
dcmle-0.2-0/dcmle/R/dcmle.R | 22
dcmle-0.2-0/dcmle/inst/ChangeLog | 10
dcmle-0.2-0/dcmle/man/MCMClist-class.Rd |only
dcmle-0.2-0/dcmle/man/chanames.Rd |only
dcmle-0.2-0/dcmle/man/codaMCMC-class.Rd |only
dcmle-0.2-0/dcmle/man/crosscorr.plot.Rd |only
dcmle-0.2-0/dcmle/man/custommodel-class.Rd |only
dcmle-0.2-0/dcmle/man/dcArgs-class.Rd |only
dcmle-0.2-0/dcmle/man/dcCodaMCMC-class.Rd |only
dcmle-0.2-0/dcmle/man/dcFit-class.Rd |only
dcmle-0.2-0/dcmle/man/dcFunction-class.Rd |only
dcmle-0.2-0/dcmle/man/dcInits-class.Rd |only
dcmle-0.2-0/dcmle/man/dcModel-class.Rd |only
dcmle-0.2-0/dcmle/man/dcParams-class.Rd |only
dcmle-0.2-0/dcmle/man/dcdiag-class.Rd |only
dcmle-0.2-0/dcmle/man/dcdiag_1-class.Rd |only
dcmle-0.2-0/dcmle/man/dcexample.Rd |only
dcmle-0.2-0/dcmle/man/dcmle-class.Rd |only
dcmle-0.2-0/dcmle/man/dcmle-package.Rd | 35 -
dcmle-0.2-0/dcmle/man/dcmle.Rd | 25 -
dcmle-0.2-0/dcmle/man/dctable-class.Rd |only
dcmle-0.2-0/dcmle/man/dctable_1-class.Rd |only
dcmle-0.2-0/dcmle/man/diagnostics.Rd |only
dcmle-0.2-0/dcmle/man/gsFit-class.Rd |only
dcmle-0.2-0/dcmle/man/makefit.Rd |only
dcmle-0.2-0/dcmle/man/mcmc-class.Rd |only
dcmle-0.2-0/dcmle/man/mcmc.list-class.Rd |only
dcmle-0.2-0/dcmle/man/mcmc.list.dc-class.Rd |only
dcmle-0.2-0/dcmle/man/nClones-class.Rd |only
dcmle-0.2-0/dcmle/man/summary.codaMCMC-class.Rd |only
dcmle-0.2-0/dcmle/man/summary.dcCodaMCMC-class.Rd |only
dcmle-0.2-0/dcmle/man/summary.dcmle-class.Rd |only
dcmle-0.2-0/dcmle/tests |only
44 files changed, 920 insertions(+), 271 deletions(-)
Title: Components of Canadian Monetary and Credit Aggregates
Diff between CDNmoney versions 2009.3-1 dated 2009-06-25 and 2012.4-1 dated 2012-05-03
Description: Components of Canadian Credit Aggregates and Monetary
Aggregates with continuity adjustments.
Author: Paul Gilbert
Maintainer: Paul Gilbert
CDNmoney-2009.3-1/CDNmoney/Rplots.pdf |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.28Jan2005.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.3Mar2006.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.5Jun2007.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.6Mar2009.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.26Aug2002.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.28Jan2005.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.3Mar2006.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.5Jun2007.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.6Feb2004.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.6Mar2009.R |only
CDNmoney-2012.4-1/CDNmoney/DESCRIPTION | 16 ++---
CDNmoney-2012.4-1/CDNmoney/MD5 |only
CDNmoney-2012.4-1/CDNmoney/NEWS | 31 +++++++---
CDNmoney-2012.4-1/CDNmoney/data/CanadianCreditData.asof.28Jan2005.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianCreditData.asof.3Mar2006.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianCreditData.asof.5Jun2007.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianCreditData.asof.6Mar2009.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianCreditData.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.26Aug2002.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.28Jan2005.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.3Mar2006.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.5Jun2007.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.6Feb2004.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.asof.6Mar2009.rda |only
CDNmoney-2012.4-1/CDNmoney/data/CanadianMoneyData.rda |only
CDNmoney-2012.4-1/CDNmoney/demo/MonetaryAggregates.R | 3
CDNmoney-2012.4-1/CDNmoney/inst/CITATION | 10 +--
CDNmoney-2012.4-1/CDNmoney/inst/doc/CDNmoney.pdf |binary
CDNmoney-2012.4-1/CDNmoney/man/CanadianCreditData.Rd | 1
CDNmoney-2012.4-1/CDNmoney/man/CanadianMoneyData.Rd | 7 --
CDNmoney-2012.4-1/CDNmoney/tests/aggtst01.R | 1
CDNmoney-2012.4-1/CDNmoney/vignettes |only
35 files changed, 42 insertions(+), 27 deletions(-)
Title: Statistical inference for partially observed Markov processes
Diff between pomp versions 0.41-3 dated 2012-04-11 and 0.42-1 dated 2012-05-03
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner,
Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael
Lavine, Daniel C. Reuman
Maintainer: Aaron A. King
pomp-0.41-3/pomp/inst/examples/gompertz.c |only
pomp-0.41-3/pomp/tests/examples.R |only
pomp-0.42-1/pomp/DESCRIPTION | 14
pomp-0.42-1/pomp/MD5 | 235 -
pomp-0.42-1/pomp/NAMESPACE | 5
pomp-0.42-1/pomp/R/aaa.R | 4
pomp-0.42-1/pomp/R/builder.R |only
pomp-0.42-1/pomp/R/nlf-funcs.R | 4
pomp-0.42-1/pomp/R/plot-pomp.R | 2
pomp-0.42-1/pomp/R/pomp-fun.R | 44
pomp-0.42-1/pomp/R/pomp.R | 14
pomp-0.42-1/pomp/R/probe-match.R | 2
pomp-0.42-1/pomp/R/probe.R | 2
pomp-0.42-1/pomp/R/simulate-pomp.R | 7
pomp-0.42-1/pomp/R/spect.R | 7
pomp-0.42-1/pomp/R/trajectory-pomp.R | 9
pomp-0.42-1/pomp/data/bbs.rda |binary
pomp-0.42-1/pomp/data/blowflies.rda |binary
pomp-0.42-1/pomp/data/dacca.rda |binary
pomp-0.42-1/pomp/data/euler.sir.rda |binary
pomp-0.42-1/pomp/data/gillespie.sir.rda |binary
pomp-0.42-1/pomp/data/gompertz.rda |binary
pomp-0.42-1/pomp/data/ou2.rda |binary
pomp-0.42-1/pomp/data/ricker.rda |binary
pomp-0.42-1/pomp/data/rw2.rda |binary
pomp-0.42-1/pomp/data/verhulst.rda |binary
pomp-0.42-1/pomp/demo/gompertz.R | 165 -
pomp-0.42-1/pomp/demo/logistic.R | 12
pomp-0.42-1/pomp/demo/sir.R | 16
pomp-0.42-1/pomp/inst/ChangeLog | 2772 ------------------
pomp-0.42-1/pomp/inst/NEWS | 42
pomp-0.42-1/pomp/inst/TODO | 6
pomp-0.42-1/pomp/inst/data-R/blowflies.R | 80
pomp-0.42-1/pomp/inst/data-R/gompertz.R | 8
pomp-0.42-1/pomp/inst/data-R/ricker.R | 10
pomp-0.42-1/pomp/inst/data-R/sir.R | 59
pomp-0.42-1/pomp/inst/doc/advanced_topics_in_pomp.Rnw | 244 +
pomp-0.42-1/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary
pomp-0.42-1/pomp/inst/doc/bsmc-ricker-flat-prior.rda |binary
pomp-0.42-1/pomp/inst/doc/gompertz-multi-mif.rda |binary
pomp-0.42-1/pomp/inst/doc/gompertz-trajmatch.rda |binary
pomp-0.42-1/pomp/inst/doc/intro_to_pomp.Rnw | 141
pomp-0.42-1/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.42-1/pomp/inst/doc/nlf-block-boot.rda |binary
pomp-0.42-1/pomp/inst/doc/nlf-boot.rda |binary
pomp-0.42-1/pomp/inst/doc/nlf-fit-from-truth.rda |binary
pomp-0.42-1/pomp/inst/doc/nlf-fits.rda |binary
pomp-0.42-1/pomp/inst/doc/nlf-lag-tests.rda |binary
pomp-0.42-1/pomp/inst/doc/nlf-multi-short.rda |binary
pomp-0.42-1/pomp/inst/doc/pomp.bib | 20
pomp-0.42-1/pomp/inst/doc/ricker-mif.rda |binary
pomp-0.42-1/pomp/inst/doc/ricker-probe-match.rda |binary
pomp-0.42-1/pomp/inst/examples/sir.c | 10
pomp-0.42-1/pomp/inst/include/pomp.h | 5
pomp-0.42-1/pomp/man/blowflies.Rd | 18
pomp-0.42-1/pomp/man/builder.Rd |only
pomp-0.42-1/pomp/man/gompertz.Rd | 10
pomp-0.42-1/pomp/man/parmat.Rd | 4
pomp-0.42-1/pomp/man/ricker.Rd | 2
pomp-0.42-1/pomp/man/sir.Rd | 7
pomp-0.42-1/pomp/man/traj-match.Rd | 2
pomp-0.42-1/pomp/src/R_init_pomp.c | 1
pomp-0.42-1/pomp/src/SSA_wrapper.c | 10
pomp-0.42-1/pomp/src/blowfly.c | 90
pomp-0.42-1/pomp/src/bspline.c | 2
pomp-0.42-1/pomp/src/dmeasure.c | 382 +-
pomp-0.42-1/pomp/src/euler.c | 968 ++----
pomp-0.42-1/pomp/src/lookup_table.c | 13
pomp-0.42-1/pomp/src/partrans.c | 194 -
pomp-0.42-1/pomp/src/pomp.h | 5
pomp-0.42-1/pomp/src/pomp_fun.c | 36
pomp-0.42-1/pomp/src/pomp_internal.h | 60
pomp-0.42-1/pomp/src/ricker.c | 8
pomp-0.42-1/pomp/src/rmeasure.c | 403 +-
pomp-0.42-1/pomp/src/sir.c | 91
pomp-0.42-1/pomp/src/skeleton.c | 310 --
pomp-0.42-1/pomp/src/trajectory.c | 464 ++-
pomp-0.42-1/pomp/src/userdata.c |only
pomp-0.42-1/pomp/tests/bbs.R | 6
pomp-0.42-1/pomp/tests/bbs.Rout.save | 50
pomp-0.42-1/pomp/tests/blowflies.R |only
pomp-0.42-1/pomp/tests/blowflies.Rout.save |only
pomp-0.42-1/pomp/tests/dacca.Rout.save | 5
pomp-0.42-1/pomp/tests/dimchecks.Rout.save | 5
pomp-0.42-1/pomp/tests/fhn.Rout.save | 7
pomp-0.42-1/pomp/tests/filtfail.Rout.save | 7
pomp-0.42-1/pomp/tests/gillespie.R | 2
pomp-0.42-1/pomp/tests/gillespie.Rout.save | 21
pomp-0.42-1/pomp/tests/gompertz.R | 8
pomp-0.42-1/pomp/tests/gompertz.Rout.save | 107
pomp-0.42-1/pomp/tests/logistic.Rout.save | 5
pomp-0.42-1/pomp/tests/ou2-bsmc.Rout.save | 9
pomp-0.42-1/pomp/tests/ou2-forecast.Rout.save | 7
pomp-0.42-1/pomp/tests/ou2-icfit.Rout.save | 7
pomp-0.42-1/pomp/tests/ou2-kalman.Rout.save | 9
pomp-0.42-1/pomp/tests/ou2-mif-fp.Rout.save | 7
pomp-0.42-1/pomp/tests/ou2-mif.Rout.save | 5
pomp-0.42-1/pomp/tests/ou2-nlf.Rout.save | 7
pomp-0.42-1/pomp/tests/ou2-pmcmc.Rout.save | 19
pomp-0.42-1/pomp/tests/ou2-probe.Rout.save | 7
pomp-0.42-1/pomp/tests/ou2-procmeas.Rout.save | 5
pomp-0.42-1/pomp/tests/ou2-simulate.Rout.save | 9
pomp-0.42-1/pomp/tests/ou2-trajmatch.Rout.save | 5
pomp-0.42-1/pomp/tests/partrans.Rout.save | 5
pomp-0.42-1/pomp/tests/pfilter.Rout.save | 29
pomp-0.42-1/pomp/tests/pomppomp.Rout.save | 5
pomp-0.42-1/pomp/tests/ricker-bsmc.R | 12
pomp-0.42-1/pomp/tests/ricker-bsmc.Rout.save | 23
pomp-0.42-1/pomp/tests/ricker-probe.R | 6
pomp-0.42-1/pomp/tests/ricker-probe.Rout.save | 87
pomp-0.42-1/pomp/tests/ricker-spect.R | 2
pomp-0.42-1/pomp/tests/ricker-spect.Rout.save | 23
pomp-0.42-1/pomp/tests/ricker.R | 35
pomp-0.42-1/pomp/tests/ricker.Rout.save | 74
pomp-0.42-1/pomp/tests/rw2.Rout.save | 11
pomp-0.42-1/pomp/tests/sir.R | 58
pomp-0.42-1/pomp/tests/sir.Rout.save | 161 -
pomp-0.42-1/pomp/tests/skeleton.R | 97
pomp-0.42-1/pomp/tests/skeleton.Rout.save | 405 --
pomp-0.42-1/pomp/tests/steps.Rout.save | 5
pomp-0.42-1/pomp/tests/synlik.Rout.save | 7
pomp-0.42-1/pomp/tests/verhulst.Rout.save | 7
122 files changed, 2945 insertions(+), 5445 deletions(-)
More information about RcmdrPlugin.EBM at CRAN
Permanent link
Title: GGEBiplotGUI: Interactive GGE Biplots in R
Diff between GGEBiplotGUI versions 1.0-1 dated 2012-04-11 and 1.0-2 dated 2012-05-03
Description: A GUI with which to construct and interact with GGE
biplots.
Author: Elisa Frutos Bernal
Maintainer: Elisa Frutos Bernal
ChangeLog |only
DESCRIPTION | 6 -
MD5 | 7 -
R/GGEBiplot.R | 190 ++++++++++++++++++++++++++++----------------
man/GGEBiplotGUI-package.Rd | 3
5 files changed, 130 insertions(+), 76 deletions(-)
Title: Data Cloning and MCMC Tools for Maximum Likelihood Methods
Diff between dclone versions 1.7-1 dated 2012-02-08 and 1.7-2 dated 2012-05-03
Description: Low level functions for implementing maximum likelihood
estimating procedures for complex models using data cloning and
Bayesian Markov chain Monte Carlo methods with support for
JAGS, WinBUGS and OpenBUGS. Parallel MCMC computation is
supported and can result in considerable speed-up.
Author: Peter Solymos
Maintainer: Peter Solymos
dclone-1.7-1/dclone/inst/COPYING |only
dclone-1.7-2/dclone/DESCRIPTION | 8 ++---
dclone-1.7-2/dclone/MD5 | 25 +++++++++--------
dclone-1.7-2/dclone/NAMESPACE | 6 +++-
dclone-1.7-2/dclone/R/as.mcmc.list.bugs.R | 3 +-
dclone-1.7-2/dclone/R/chisq.diag.R | 32 ++---------------------
dclone-1.7-2/dclone/R/chisq.diag.mcmc.list.R |only
dclone-1.7-2/dclone/R/custommodel.R | 11 +++++--
dclone-1.7-2/dclone/R/lambdamax.diag.R | 16 +----------
dclone-1.7-2/dclone/R/lambdamax.diag.mcmc.list.R |only
dclone-1.7-2/dclone/R/write.jags.model.R | 7 ++---
dclone-1.7-2/dclone/inst/ChangeLog | 7 +++++
dclone-1.7-2/dclone/man/dc.fit.Rd | 2 -
dclone-1.7-2/dclone/man/lambdamax.diag.Rd | 12 +++++++-
dclone-1.7-2/dclone/man/write.jags.model.Rd | 10 +++++--
15 files changed, 65 insertions(+), 74 deletions(-)
Title: Bootstrapped Response and Correlation Functions
Diff between bootRes versions 1.2.1 dated 2012-04-16 and 1.2.2 dated 2012-05-03
Description: Calculation of Bootstrapped Response and Correlation
Functions for Use in Dendroclimatology
Author: Christian Zang
Maintainer: Christian Zang
Changelog | 5 +++
DESCRIPTION | 8 ++---
MD5 | 12 ++++----
R/mdcc.R | 85 +++++++++++++++++++++++++++++++++++++++++----------------
R/mdcplot.R | 7 ++++
man/mdcc.Rd | 5 ++-
man/mdcplot.Rd | 7 ++++
7 files changed, 94 insertions(+), 35 deletions(-)