New package mmm2 with initial version 1.0
Package: mmm2
Type: Package
Title: Multivariate marginal models with shared regression parameters
Version: 1.0
Date: 2012-04-22
Author: Ozgur Asar, Ozlem Ilk
Depends: gee
Maintainer: Ozgur Asar
Description: Fits multivariate marginal models with shared regression parameters for discrete and continuous responses
License: GPL (>= 2)
Packaged: 2012-04-22 08:20:17 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-05-05 16:34:35

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Package RMark updated to version 2.1.1 with previous version 2.1.0 dated 2012-01-28

Title: R Code for MARK Analysis
Description: This package provides an interface to the software package MARK developed by Gary White. MARK is freely available at (http://www.phidot.org/software/mark/download/) but is not open source.
Author: Jeff Laake with contributions from Eldar Rakhimberdiev, Bret Collier, Jay Rotella and Andrew Paul
Maintainer: Jeff Laake

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New package ISBF with initial version 0.1
Package: ISBF
Type: Package
Title: Iterative Selection of Blocks of Features - ISBF
Version: 0.1
Date: 2011-10-13
Author: Pierre Alquier
Maintainer: Pierre Alquier
Description: Selection of features for sparse regression estimation (like the LASSO). Selection of blocks of features when the regression parameter is sparse and constant by blocks (like the Fused-LASSO). Application to cgh arrays. TEST VERSION, USE AT YOUR OWN RISK!
License: GPL
LazyLoad: yes
Packaged: 2012-05-05 09:21:03 UTC; alquier
Repository: CRAN
Date/Publication: 2012-05-05 11:26:00

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Package spam updated to version 0.29-1 with previous version 0.29-0 dated 2012-05-01

Title: SPArse Matrix
Description: Set of function for sparse matrix algebra. Differences with SparseM/Matrix are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within GMRF. (4) S3 and S4 like-"compatible" ... and it is fast.
Author: Reinhard Furrer
Maintainer: Reinhard Furrer

Diff between spam versions 0.29-0 dated 2012-05-01 and 0.29-1 dated 2012-05-05

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New package discreteMTP with initial version 0.1-2
Package: discreteMTP
Type: Package
Title: Multiple testing procedures for discrete test statistics
Version: 0.1-2
Date: 2012-05-04
Authors@R: c(person("Ruth", "Heller", role = "aut"), person("Hadas", "Gur", role = "aut"), person("Shay", "Yaacoby", role = c("aut","cre"),email = "shay66@gmail.com"))
Description: Multiple testing procedures for discrete test statistics, that use the known discrete null distribution of the p-values for simultaneous inference.
License: GPL (>= 2)
URL: http://www.math.tau.ac.il/~ruheller/
Packaged: 2012-05-04 15:01:51 UTC; Shay
Author: Ruth Heller [aut], Hadas Gur [aut], Shay Yaacoby [aut, cre]
Maintainer: Shay Yaacoby
Repository: CRAN
Date/Publication: 2012-05-05 09:25:07

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Package TSfame updated to version 2012.4-1 with previous version 2011.11-1 dated 2011-11-02

Title: Time Series Database Interface extensions for fame
Description: TSfame provides a fame interface for TSdbi.
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between TSfame versions 2011.11-1 dated 2011-11-02 and 2012.4-1 dated 2012-05-05

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New package varcompci with initial version 1.0.1
Package: varcompci
Type: Package
Title: VARCOMPCI: A Package for Computation of Confidence Intervals for Variance Components of Mixed Models in R.
Version: 1.0.1
Date: 2011-02-14
Author: Civit, S., Vilardell, M., Hess, A., Matthew, Z., Ge, Y., Caballe, A.
Maintainer: Sergi Civit
Description: This package compute confidence intervals on individual variances for any balanced mixed model, involving five or fewer factors according to Burdick and Graybill (1992) methodology. The package would fit a saturated model to the data (main effect and interaction terms of all orders) providing an ANOVA model with Expected Mean Squares (type III) by using the (Bennett and Franklin 1954) algorithm. The output will include: a table showing the confidence interval (CI) and estimate of each covariance parameter, as well as the method used to compute the CI, the Expected Mean Square, an ANOVA table showing the degrees of freedom (df), sums of squares (SS), mean squares (MS), F statistic, and finally AIC and BIC measures.
License: GPL (>= 2)
LazyLoad: yes
Depends: methods
Packaged: 2012-05-04 14:49:07 UTC; adri
Repository: CRAN
Date/Publication: 2012-05-05 06:18:32

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Package tensor updated to version 1.5 with previous version 1.4 dated 2002-01-16

Title: Tensor product of arrays
Description: The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals.
Author: Jonathan Rougier
Maintainer: Jonathan Rougier

Diff between tensor versions 1.4 dated 2002-01-16 and 1.5 dated 2012-05-05

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Package survSNP updated to version 0.21-4 with previous version 0.21-1 dated 2012-04-08

Title: Power and Sample Size Calculations for SNP Association Studies with Censored Time to Event Outcomes
Description: This package can be used to conduct asymptotic and empirical power and sample size calculations for SNP association studies with right censored time to event outcomes
Author: Kouros Owzar, Zhiguo Li, Nancy Cox, Sin-Ho Jung and Chanhee Yi
Maintainer: Kouros Owzar

Diff between survSNP versions 0.21-1 dated 2012-04-08 and 0.21-4 dated 2012-05-05

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Package Rlabkey updated to version 2.1.118 with previous version 2.1.117 dated 2012-03-27

Title: Data exchange between R and LabKey Server
Description: This package allows an R user to discover, query and modify data in LabKey Server
Author: Peter Hussey
Maintainer: Cory Nathe

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Package plm updated to version 1.2-10 with previous version 1.2-8 dated 2011-12-24

Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data.
Author: Yves Croissant , Giovanni Millo
Maintainer: Yves Croissant

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Package metrumrg updated to version 5.17 with previous version 5.13 dated 2012-02-09

Title: Pharmacometric tools for data preparation, modeling, simulation, and reporting
Description: Pharmacometric tools for common data preparation tasks, stratified bootstrap resampling of data sets, NONMEM control stream creation/editing, NONMEM model execution, creation of standard and user-defined diagnostic plots, execution and summary of bootstrap and predictive check results, implementation of simulations from posterior parameter distributions, reporting of output tables and creation of detailed analysis logs.
Author: Tim Bergsma, Bill Knebel, Leonid Gibiansky, Natalie Hsiang
Maintainer: Tim Bergsma

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New package pathClass with initial version 0.9.3
Package: pathClass
Type: Package
Title: Classification using biological pathways as prior knowledge
Version: 0.9.3
Date: 2012-04-29
Author: Marc Johannes
Maintainer: Marc Johannes
Description: pathClass is a collection of classification methods that use information about feature connectivity in a biological network as an additional source of information. This additional knowledge is incorporated into the classification a priori. Several authors have shown that this approach significantly increases the classification performance.
Depends: R (>= 2.10), svmpath, kernlab, affy, Biobase, ROCR, igraph, lpSolve
Enhances: multicore
Suggests: hu6800.db, golubEsets
License: GPL (>= 2)
LazyLoad: yes
Collate: 'CrossValidation.R' 'GeneRank.R' 'GraphSVM.R' 'networkBasedSVM.R' 'PathwayMethods.R' 'RecursiveFeatureElimination.R' 'RRFE.R' 'SpanBound.R' 'SVMs.R'
Packaged: 2012-04-30 01:35:26 UTC; marc
Repository: CRAN
Date/Publication: 2012-05-05 07:23:04

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Package bayesLife updated to version 0.4-0 with previous version 0.3-3 dated 2012-04-19

Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery; original WinBugs code written by Jennifer Chunn
Maintainer: Hana Sevcikova

Diff between bayesLife versions 0.3-3 dated 2012-04-19 and 0.4-0 dated 2012-05-05

 ChangeLog                   |   11 +++
 DESCRIPTION                 |   10 +-
 MD5                         |   29 ++++----
 NAMESPACE                   |    5 +
 R/get_outputs.R             |   36 +++++++---
 R/plot_functions.R          |  153 +++++++++++++++++++++++++++++++++-----------
 R/projection_fcns.R         |  112 +++++++++++++++++++++++---------
 R/run_mcmc.R                |    4 -
 man/bayesLife-package.Rd    |    7 +-
 man/e0.gap.plot.Rd          |   18 ++++-
 man/e0.joint.plot.Rd        |only
 man/e0.predict.Rd           |   19 +++--
 man/e0.predict.extra.Rd     |   11 ++-
 man/e0.trajectories.plot.Rd |    6 -
 man/joint.male.predict.Rd   |    7 +-
 tests/test_functions.R      |    4 +
 16 files changed, 312 insertions(+), 120 deletions(-)

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Package bayesDem updated to version 1.6-0 with previous version 1.5-1 dated 2012-04-19

Title: Graphical User Interface for bayesTFR, bayesLife and bayesPop
Description: Provides Graphical user interface for the packages bayesTFR, bayesLife and bayesPop
Author: Hana Sevcikova
Maintainer: Hana Sevcikova

Diff between bayesDem versions 1.5-1 dated 2012-04-19 and 1.6-0 dated 2012-05-05

 ChangeLog               |    7 ++++++-
 DESCRIPTION             |   10 +++++-----
 MD5                     |   12 ++++++------
 R/e0-predict.R          |    3 ++-
 R/e0-results.R          |   44 ++++++++++++++++++++++++++++++++++----------
 R/pop-results.R         |    6 ++++++
 man/bayesDem-package.Rd |    4 ++--
 7 files changed, 61 insertions(+), 25 deletions(-)

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