Title: timereg package for Flexible regression models for survival
data.
Diff between timereg versions 1.6-3 dated 2012-04-17 and 1.6-5 dated 2012-05-07
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparametric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in ahaz package.
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Maintainer: Thomas Scheike
DESCRIPTION | 8 ++---
MD5 | 12 ++++----
R/comprisk.r | 29 ++++++++++++---------
R/two-stage-reg.r | 70 ++++++++++++++++++---------------------------------
man/comp.risk.Rd | 8 ++++-
man/two.stage.reg.Rd | 12 +++++---
src/comprisk.c | 18 +++++--------
7 files changed, 75 insertions(+), 82 deletions(-)
Title: Analyze shot group data
Diff between shotGroups versions 0.2 dated 2012-03-13 and 0.2-1 dated 2012-05-07
Description: Analyzes shot group data: Read in data, plot, describe,
and compare shot groups. Perform statistical tests including
standard, nonparametric, and robust methods. Works with files
exported by OnTarget PC and OnTarget TDS.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger
DESCRIPTION | 8 +++---
MD5 | 43 +++++++++++++++++++----------------
NAMESPACE | 2 -
R/compareGroups.R | 7 +++--
R/getDevice.R |only
R/getMinBBox.R | 55 +++++++++++++++++++++-------------------------
R/getXYmat.R |only
R/groupLocation.r | 3 +-
R/groupShape.r | 26 ++++++++++-----------
R/groupSpread.r | 7 +++--
inst/ChangeLog | 53 +++++++++++++++++++++++++++++++-------------
man/analyzeGroup.Rd | 2 -
man/compareGroups.Rd | 2 -
man/drawBox.Rd | 9 ++++---
man/drawBox2.Rd | 9 ++++---
man/drawCircle.Rd | 4 +--
man/drawEllipse.Rd | 4 +--
man/getCEP.Rd | 14 +++++------
man/getConfEll.Rd | 6 ++---
man/getXYmat.Rd |only
man/readDataMisc.Rd | 2 -
man/readDataOT1.Rd | 6 ++---
man/readDataOT2.Rd | 4 +--
man/shotGroups-package.Rd | 4 +--
24 files changed, 149 insertions(+), 121 deletions(-)
Title: Visualization of structure and contents of a database
Diff between CityPlot versions 1.0 dated 2011-08-03 and 2.0 dated 2012-05-07
Description: Input: a csv-file for each database table and a
controlfile describing relations between tables. Output: An
extended ER diagram
Author: Martin Dugas
Maintainer: Martin Dugas
DESCRIPTION | 8 +-
MD5 |only
NAMESPACE |only
R/CityPlot.R | 154 ++++++++++++++++++++++++++++++++++++--------------------
man/CityPlot.Rd | 5 +
5 files changed, 108 insertions(+), 59 deletions(-)
Title: Stats 20x
Diff between s20x versions 3.1-8 dated 2011-02-08 and 3.1-9 dated 2012-05-07
Description: Stats 20x functions.
Author: Andrew Balemi, Dineika Chandra, James Curran, Brant Deppa, Mike
Forster, Charlotte Maia, Brendan McArdle, Chris Wild
Maintainer: James M. Curran
s20x-3.1-8/s20x/R/version.R |only
s20x-3.1-8/s20x/data/airpass.df.txt |only
s20x-3.1-8/s20x/data/apples.df.txt |only
s20x-3.1-8/s20x/data/arousal.df.txt |only
s20x-3.1-8/s20x/data/beer.df.txt |only
s20x-3.1-8/s20x/data/body.df.txt |only
s20x-3.1-8/s20x/data/books.df.txt |only
s20x-3.1-8/s20x/data/bursary.df.txt |only
s20x-3.1-8/s20x/data/butterfat.df.txt |only
s20x-3.1-8/s20x/data/camplake.df.txt |only
s20x-3.1-8/s20x/data/chalk.df.txt |only
s20x-3.1-8/s20x/data/computer.df.txt |only
s20x-3.1-8/s20x/data/course.df.txt |only
s20x-3.1-8/s20x/data/course2way.df.txt |only
s20x-3.1-8/s20x/data/diamonds.df.txt |only
s20x-3.1-8/s20x/data/fire.df.txt |only
s20x-3.1-8/s20x/data/fruitfly.df.txt |only
s20x-3.1-8/s20x/data/house.df.txt |only
s20x-3.1-8/s20x/data/incomes.df.txt |only
s20x-3.1-8/s20x/data/lakemary.df.txt |only
s20x-3.1-8/s20x/data/larain.df.txt |only
s20x-3.1-8/s20x/data/mazda.df.txt |only
s20x-3.1-8/s20x/data/mening.df.txt |only
s20x-3.1-8/s20x/data/mergers.df.txt |only
s20x-3.1-8/s20x/data/mozart.df.txt |only
s20x-3.1-8/s20x/data/nail.df.txt |only
s20x-3.1-8/s20x/data/oysters.df.txt |only
s20x-3.1-8/s20x/data/peru.df.txt |only
s20x-3.1-8/s20x/data/rain.df.txt |only
s20x-3.1-8/s20x/data/seeds.df.txt |only
s20x-3.1-8/s20x/data/sheep.df.txt |only
s20x-3.1-8/s20x/data/skulls.df.txt |only
s20x-3.1-8/s20x/data/soyabean.df.txt |only
s20x-3.1-8/s20x/data/teach.df.txt |only
s20x-3.1-8/s20x/data/technitron.df.txt |only
s20x-3.1-8/s20x/data/thyroid.df.txt |only
s20x-3.1-8/s20x/data/toothpaste.df.txt |only
s20x-3.1-8/s20x/data/zoo.df.txt |only
s20x-3.1-8/s20x/man/panel.cor.Rd |only
s20x-3.1-8/s20x/man/panel.hist.Rd |only
s20x-3.1-8/s20x/man/version.Rd |only
s20x-3.1-9/s20x/DESCRIPTION | 10 ++--
s20x-3.1-9/s20x/MD5 |only
s20x-3.1-9/s20x/NAMESPACE |only
s20x-3.1-9/s20x/R/freq1way.r | 74 +++++++++++++++---------------
s20x-3.1-9/s20x/R/pairs20x.R | 9 ++-
s20x-3.1-9/s20x/R/predict20x.R | 2
s20x-3.1-9/s20x/data/airpass.df.txt.gz |only
s20x-3.1-9/s20x/data/apples.df.txt.gz |only
s20x-3.1-9/s20x/data/arousal.df.txt.gz |only
s20x-3.1-9/s20x/data/beer.df.txt.gz |only
s20x-3.1-9/s20x/data/body.df.txt.gz |only
s20x-3.1-9/s20x/data/books.df.txt.gz |only
s20x-3.1-9/s20x/data/bursary.df.txt.gz |only
s20x-3.1-9/s20x/data/butterfat.df.txt.gz |only
s20x-3.1-9/s20x/data/camplake.df.txt.gz |only
s20x-3.1-9/s20x/data/chalk.df.txt.gz |only
s20x-3.1-9/s20x/data/computer.df.txt.gz |only
s20x-3.1-9/s20x/data/course.df.txt.gz |only
s20x-3.1-9/s20x/data/course2way.df.txt.gz |only
s20x-3.1-9/s20x/data/diamonds.df.txt.gz |only
s20x-3.1-9/s20x/data/fire.df.txt.gz |only
s20x-3.1-9/s20x/data/fruitfly.df.txt.gz |only
s20x-3.1-9/s20x/data/house.df.txt.gz |only
s20x-3.1-9/s20x/data/incomes.df.txt.gz |only
s20x-3.1-9/s20x/data/lakemary.df.txt.gz |only
s20x-3.1-9/s20x/data/larain.df.txt.gz |only
s20x-3.1-9/s20x/data/mazda.df.txt.gz |only
s20x-3.1-9/s20x/data/mening.df.txt.gz |only
s20x-3.1-9/s20x/data/mergers.df.txt.gz |only
s20x-3.1-9/s20x/data/mozart.df.txt.gz |only
s20x-3.1-9/s20x/data/nail.df.txt.gz |only
s20x-3.1-9/s20x/data/oysters.df.txt.gz |only
s20x-3.1-9/s20x/data/peru.df.txt.gz |only
s20x-3.1-9/s20x/data/rain.df.txt.gz |only
s20x-3.1-9/s20x/data/seeds.df.txt.gz |only
s20x-3.1-9/s20x/data/sheep.df.txt.gz |only
s20x-3.1-9/s20x/data/skulls.df.txt.gz |only
s20x-3.1-9/s20x/data/soyabean.df.txt.gz |only
s20x-3.1-9/s20x/data/teach.df.txt.gz |only
s20x-3.1-9/s20x/data/technitron.df.txt.gz |only
s20x-3.1-9/s20x/data/thyroid.df.txt.gz |only
s20x-3.1-9/s20x/data/toothpaste.df.txt.gz |only
s20x-3.1-9/s20x/data/zoo.df.txt.gz |only
s20x-3.1-9/s20x/man/summaryStats.Rd | 8 ---
s20x-3.1-9/s20x/tests |only
86 files changed, 49 insertions(+), 54 deletions(-)
Title: A graphical user interface for the MuToss Project
Diff between mutossGUI versions 0.1-6 dated 2011-12-06 and 0.1-7 dated 2012-05-07
Description: A graphical user interface for the MuToss Project
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten
Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
DESCRIPTION | 14 +++++++-------
MD5 | 6 +++---
R/helperfunctions.R | 4 ++--
R/onLoad.R | 6 ++----
4 files changed, 14 insertions(+), 16 deletions(-)
Title: Unified multiple testing procedures
Diff between mutoss versions 0.1-6 dated 2011-12-06 and 0.1-7 dated 2012-05-07
Description: The Mutoss package and accompanying mutossGUI package are
designed to ease the application and comparison of multiple
hypothesis testing procedures.
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten
Dickhaus, Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
DESCRIPTION | 21 +++++++++++----------
MD5 | 18 +++++++++---------
NEWS | 5 +++++
R/Hommel.R | 3 +--
R/SUD.R | 4 ++--
R/onLoad.R | 28 ++++++++++++++--------------
inst/doc/quickstart.pdf |binary
inst/doc/simToolManual.pdf |binary
inst/doc/simToolVignette.pdf |binary
man/hommel.Rd | 23 +++++++++++++----------
10 files changed, 55 insertions(+), 47 deletions(-)
Title: Graph Based Multiple Comparison Procedures
Diff between gMCP versions 0.7-8 dated 2012-03-06 and 0.7-9 dated 2012-05-07
Description: This package provides functions and a graphical user
interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer, Florian Klinglmueller (parametric tests,
adaptive designs), Bjoern Bornkamp (power simulations)
Maintainer: Kornelius Rohmeyer
gMCP-0.7-8/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerDialog.java |only
gMCP-0.7-9/gMCP/DESCRIPTION | 6
gMCP-0.7-9/gMCP/MD5 | 62 -
gMCP-0.7-9/gMCP/NEWS | 16
gMCP-0.7-9/gMCP/R/calcPower.R | 78 +
gMCP-0.7-9/gMCP/R/gACT-internal.R | 30
gMCP-0.7-9/gMCP/R/generateBounds.R | 4
gMCP-0.7-9/gMCP/R/generatePvals.R | 4
gMCP-0.7-9/gMCP/R/graphTest.R | 66 -
gMCP-0.7-9/gMCP/R/rqmvnorm.R | 5
gMCP-0.7-9/gMCP/TODO | 12
gMCP-0.7-9/gMCP/inst/doc/AQuickStart.pdf |binary
gMCP-0.7-9/gMCP/inst/doc/gMCP.pdf |binary
gMCP-0.7-9/gMCP/inst/doc/parametric.pdf |binary
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/CreateGraphGUI.java | 2
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/RControl.java | 1
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/datatable/DataTableModel.java | 13
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/ColorChooseDialog.java | 6
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GraphSendToArchiveDialog.java | 17
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/GroupDialog.java | 11
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/ImagePanel.java | 3
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/InfoDialog.java | 4
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerDialogParameterUncertainty.java | 416 ++++++++--
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/PowerParameterPanel.java |only
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/dialogs/TextFileViewer.java | 62 +
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/graph/Edge.java | 18
gMCP-0.7-9/gMCP/inst/java-src/org/af/gMCP/gui/graph/PView.java | 11
gMCP-0.7-9/gMCP/inst/java/gsrmtp.jar |binary
gMCP-0.7-9/gMCP/man/calcPower.Rd | 9
gMCP-0.7-9/gMCP/man/generateBounds.Rd | 23
gMCP-0.7-9/gMCP/man/generatePvals.Rd | 24
gMCP-0.7-9/gMCP/man/graphTest.Rd | 4
gMCP-0.7-9/gMCP/man/rqmvnorm.Rd | 3
33 files changed, 720 insertions(+), 190 deletions(-)
Title: Majorization Minimization by Coordinate Descent Algorithm for
Concave Penalized Logistic Regression for High Dimensional Data
Diff between cvplogistic versions 1.0-0 dated 2011-10-20 and 2.0-0 dated 2012-05-07
Description: The package uses majorization minimization by coordinate
descent (MMCD) algorithm to compute the solution surface for
concave penalized logistic regression models. The SCAD and MCP
(default) are two concave penalties considered in this
implementation. The package provides three types of solutions
surfaces, one computed along the regulation parameter kappa
(default), the one along the penalty parameter lambda, and the
one computed using a hybrid algorithm. The package also
provides three tuning parameter selection methods, one based on
AIC, one based on BIC and one based on k-fold cross-validated
area under ROC curve. Other algorithms such as the adaptive
rescaling approach and local linear approximation approach are
also provided for the MCP penalty as optional choices.
Author: Dingfeng Jiang
Maintainer: Dingfeng Jiang
cvplogistic-1.0-0/cvplogistic/man/auc.cvplogistic.Rd |only
cvplogistic-2.0-0/cvplogistic/DESCRIPTION | 16
cvplogistic-2.0-0/cvplogistic/MD5 | 17
cvplogistic-2.0-0/cvplogistic/NAMESPACE | 4
cvplogistic-2.0-0/cvplogistic/R/cvplogistic.R | 869 +--
cvplogistic-2.0-0/cvplogistic/man/aic.cvplogistic.Rd | 102
cvplogistic-2.0-0/cvplogistic/man/bic.cvplogistic.Rd | 110
cvplogistic-2.0-0/cvplogistic/man/cvauc.cvplogistic.Rd |only
cvplogistic-2.0-0/cvplogistic/man/cvplogistic.Rd | 151
cvplogistic-2.0-0/cvplogistic/src/cvplogistic.f | 3807 ++++++++++++-----
cvplogistic-2.0-0/cvplogistic/tests |only
11 files changed, 3460 insertions(+), 1616 deletions(-)