Title: Targeted Maximum Likelihood Estimation
Diff between tmle versions 1.2 dated 2012-04-03 and 1.2.0-1 dated 2012-05-11
Description: tmle implements targeted maximum likelihood estimation,
first described in van der Laan and Rubin, 2006 (Targeted
Maximum Likelihood Learning, The International Journal of
biostatistics, 2(1), 2006. This version adds the tmleMSM
function to the package, for estimating the parameters of a
marginal structural model (MSM) for a binary point treatment
effect. The tmle function calculates the adjusted marginal
difference in mean outcome associated with a binary point
treatment, for continuous or binary outcomes. Relative risk
and odds ratio estimates are also reported for binary outcomes.
Missingness in the outcome is allowed, but not in treatment
assignment or baseline covariate values. Effect estimation
stratified by a binary mediating variable is also available.
The population mean is calculated when there is missingness,
and no variation in the treatment assignment. An ID argument
can be used to identify repeated measures. Default settings
call SuperLearner to estimate the Q and g portions of the
likelihood, unless values or a user-supplied regression
function are passed in as arguments.
Author: Susan Gruber, in collaboration with Mark van der Laan
Maintainer: Susan Gruber
DESCRIPTION | 6 ++---
MD5 | 8 ++++---
NEWS | 8 ++++++-
data |only
man/fev.Rd |only
man/tmleMSM.Rd | 61 +++++++++++++++++++++++++++++----------------------------
6 files changed, 47 insertions(+), 36 deletions(-)
Title: Mokken Scale Analysis in R
Diff between mokken versions 2.7.1 dated 2012-01-22 and 2.7.2 dated 2012-05-11
Description: mokken contains functions for performing Mokken scale
analysis on test and questionnaire data. It includes an
automated item selection algorithm, and various checks of model
assumptions.
Author: L. Andries van der Ark
Maintainer: L. Andries van der Ark
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
R/check.iio.R | 20 ++++++++++++++++----
R/check.reliability.R | 2 +-
R/summary.iio.class.R | 3 ++-
inst/CITATION | 44 +++++++++++++++++++++++++++++++++++---------
inst/doc/mokken.pdf |binary
man/check.iio.Rd | 6 +++---
man/mokken-package.Rd | 37 ++++++++++++++++++++++++-------------
9 files changed, 93 insertions(+), 43 deletions(-)
Title: Implementing dispersal into species distribution models
Diff between MigClim versions 1.1 dated 2012-05-03 and 1.2 dated 2012-05-11
Description: Functions for implementing species dispersal into
projections of species distribution models (e.g. under climate
change scenarios).
Author: Robin Engler
Maintainer: Robin Engler
DESCRIPTION | 8 -
MD5 | 16 +--
R/MigClim.migrate.R | 79 +++++++++++++++--
R/MigClim.plot.R | 2
src/barriers.c | 84 +++++++++++--------
src/file_io.c | 213 +-----------------------------------------------
src/migclim.h | 24 ++---
src/migrate.c | 229 +++++++++++++++++++++++-----------------------------
src/univ_disp.c | 58 ++++---------
9 files changed, 271 insertions(+), 442 deletions(-)
Title: Multi-state Markov and hidden Markov models in continuous time
Diff between msm versions 1.1 dated 2011-09-10 and 1.1.1 dated 2012-05-11
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates, which may be constant
or piecewise-constant in time. A variety of observation
schemes are supported, including processes observed at
arbitrary times (panel data), continuously-observed processes,
and censored states.
Author: Christopher Jackson
Maintainer: Christopher Jackson
ChangeLog | 56 +++++++++++++++++++++++++++++++++---
DESCRIPTION | 8 ++---
MD5 | 48 +++++++++++++++---------------
R/boot.R | 25 +++++++++-------
R/msm.R | 35 +++++++++++++---------
R/outputs.R | 21 ++++++++++++-
R/pearson.R | 15 +++++++++
R/utils.R | 9 +++--
data/aneur.txt.gz |binary
data/cav.txt.gz |binary
data/fev.txt.gz |binary
data/psor.txt.gz |binary
inst/NEWS | 23 ++++++++++++++
inst/doc/msm-manual.pdf |binary
man/boot.msm.Rd | 3 +
man/ematrix.msm.Rd | 1
man/msm.Rd | 29 ++++++++++--------
man/pearson.msm.Rd | 20 +++++++-----
man/plot.prevalence.msm.Rd | 2 -
man/plot.survfit.msm.Rd | 2 -
man/pmatrix.msm.Rd | 3 +
man/pnext.msm.Rd | 3 +
man/qmatrix.msm.Rd | 5 +--
man/qratio.msm.Rd | 3 +
tests/boot.R | 70 +++++++++++++++++++++++++++------------------
25 files changed, 261 insertions(+), 120 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 1.5.1 dated 2012-04-16 and 1.6.1 dated 2012-05-11
Description: The package implements the statistical theory of L-moments
in R including L-moment estimation, probability-weighted moment
estimation, parameter estimation for numerous familiar and
not-so-familiar distributions, and L-moment estimation for the
same distributions from the parameters. L-moments are derived
from the expectations of order statistics and are linear with
respect to the probability-weighted moments; choice of either
can be made by mathematical convenience. L-moments are directly
analogous to the well-known product moments; however, L-moments
have many advantages including unbiasedness, robustness, and
consistency with respect to the product moments. The method of
L-moments can out perform the method of maximum likelihood. The
lmomco package historically is oriented around canonical
FORTRAN algorithms of J.R.M. Hosking, and the nomenclature for
many of the functions parallels that of the Hosking library,
which later became available in the lmom package. However, vast
arrays of various extensions and curiosities are added by the
author to aid and expand the breadth of L-moment application.
Such extensions include venerable statistics as Sen weighted
mean, Gini mean difference, plotting positions, and conditional
probability adjustment. The plotting of L-moment ratio diagrams
is directly supported in this package. Computations of
L-moments for right-tail and left-tail censoring by known or
unknown censoring threshold and also by indicator variable also
are available. E.A.H. Elamir and A.H. Seheult have developed
the trimmed L-moments, which are implemented in this package,
and numerical integration of quantile functions is used to
dynamically compute trajectories of select TL-moment ratios for
the construction of TL-moment ratio diagrams. Robert Serfling
and Peng Xiao have extended L-moments into multivariate space;
the so-called sample L-comoments are implemented here and might
have considerable application in copula theory because they
measure asymmetric correlation and higher co-moments or
co-movements of variables. The package supports the following
distributions with moment type shown as "L" (L-moments) or "TL"
(trimmed L-moments) and additional support for right-tail
censoring ([RC]) include: Asymmetric Exponential Power (L),
Cauchy (TL), Exponential (L), Gamma (L), Generalized Extreme
Value (L), Generalized Lambda (L & TL), Generalized Logistic
(L), Generalized Normal (L), Generalized Pareto (L[RC] & TL),
Gumbel (L), Kappa (L), Kumaraswamy (L), Laplace (L), Normal
(L), 3-parameter log-Normal (L), Pearson Type III (L), Rayleigh
(L), Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated
Exponential (L), Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith
lmomco-1.5.1/lmomco/R/are.paraep.valid.R |only
lmomco-1.5.1/lmomco/R/cdfaep.R |only
lmomco-1.5.1/lmomco/R/is.aep.R |only
lmomco-1.5.1/lmomco/R/lmomaep.R |only
lmomco-1.5.1/lmomco/R/paraep.R |only
lmomco-1.5.1/lmomco/R/pdfaep.R |only
lmomco-1.5.1/lmomco/R/quaaep.R |only
lmomco-1.5.1/lmomco/man/are.paraep.valid.Rd |only
lmomco-1.5.1/lmomco/man/cdfaep.Rd |only
lmomco-1.5.1/lmomco/man/is.aep.Rd |only
lmomco-1.5.1/lmomco/man/lmomaep.Rd |only
lmomco-1.5.1/lmomco/man/paraep.Rd |only
lmomco-1.5.1/lmomco/man/pdfaep.Rd |only
lmomco-1.5.1/lmomco/man/quaaep.Rd |only
lmomco-1.6.1/lmomco/ChangeLog | 52 +++++++++++--
lmomco-1.6.1/lmomco/DESCRIPTION | 8 +-
lmomco-1.6.1/lmomco/MD5 | 100 +++++++++++++-------------
lmomco-1.6.1/lmomco/NAMESPACE | 14 +--
lmomco-1.6.1/lmomco/R/are.par.valid.R | 4 -
lmomco-1.6.1/lmomco/R/are.paraep4.valid.R |only
lmomco-1.6.1/lmomco/R/cdfaep4.R |only
lmomco-1.6.1/lmomco/R/dist.list.R | 2
lmomco-1.6.1/lmomco/R/genci.R | 8 +-
lmomco-1.6.1/lmomco/R/is.aep4.R |only
lmomco-1.6.1/lmomco/R/lmom2par.R | 5 +
lmomco-1.6.1/lmomco/R/lmomaep4.R |only
lmomco-1.6.1/lmomco/R/lmorph.R | 5 -
lmomco-1.6.1/lmomco/R/lmrdia.R | 71 ++++++++++--------
lmomco-1.6.1/lmomco/R/par2cdf.R | 4 -
lmomco-1.6.1/lmomco/R/par2lmom.R | 4 -
lmomco-1.6.1/lmomco/R/par2pdf.R | 4 -
lmomco-1.6.1/lmomco/R/par2qua.R | 4 -
lmomco-1.6.1/lmomco/R/paraep4.R |only
lmomco-1.6.1/lmomco/R/pdfaep4.R |only
lmomco-1.6.1/lmomco/R/plotlmrdia.R | 11 ++
lmomco-1.6.1/lmomco/R/prettydist.R | 2
lmomco-1.6.1/lmomco/R/qua2ci.R | 18 +++-
lmomco-1.6.1/lmomco/R/quaaep4.R |only
lmomco-1.6.1/lmomco/R/sysdata.rda |binary
lmomco-1.6.1/lmomco/R/theoTLmoms.R | 10 ++
lmomco-1.6.1/lmomco/R/vec2TLmom.R | 39 +---------
lmomco-1.6.1/lmomco/R/vec2lmom.R | 44 ++++-------
lmomco-1.6.1/lmomco/R/vec2par.R | 4 -
lmomco-1.6.1/lmomco/inst/doc/SysDataBuilder.R | 52 +++++++++++++
lmomco-1.6.1/lmomco/man/are.par.valid.Rd | 2
lmomco-1.6.1/lmomco/man/are.paraep4.valid.Rd |only
lmomco-1.6.1/lmomco/man/cdfaep4.Rd |only
lmomco-1.6.1/lmomco/man/genci.Rd | 27 ++++---
lmomco-1.6.1/lmomco/man/is.aep4.Rd |only
lmomco-1.6.1/lmomco/man/lmom2par.Rd | 6 -
lmomco-1.6.1/lmomco/man/lmomaep4.Rd |only
lmomco-1.6.1/lmomco/man/lmorph.Rd | 2
lmomco-1.6.1/lmomco/man/lmrdia.Rd | 2
lmomco-1.6.1/lmomco/man/par2lmom.Rd | 2
lmomco-1.6.1/lmomco/man/paraep4.Rd |only
lmomco-1.6.1/lmomco/man/pdfaep4.Rd |only
lmomco-1.6.1/lmomco/man/pdfgld.Rd | 4 -
lmomco-1.6.1/lmomco/man/pdfrevgum.Rd | 3
lmomco-1.6.1/lmomco/man/pdfwei.Rd | 17 +---
lmomco-1.6.1/lmomco/man/plotlmrdia.Rd | 8 +-
lmomco-1.6.1/lmomco/man/quaaep4.Rd |only
lmomco-1.6.1/lmomco/man/theoTLmoms.Rd | 17 ++--
lmomco-1.6.1/lmomco/man/vec2TLmom.Rd | 37 ++-------
lmomco-1.6.1/lmomco/man/vec2lmom.Rd | 37 ++++-----
lmomco-1.6.1/lmomco/man/vec2par.Rd | 2
65 files changed, 357 insertions(+), 274 deletions(-)
Title: An Object Oriented Framework for Robust Factor Analysis
Diff between robustfa versions 1.0 dated 2012-03-12 and 1.0-01 dated 2012-05-11
Description: An object oriented framework for robust factor analysis.
In the framework, new S4 classes "Fa", "FaClassic", "FaRobust",
"FaCov", "SummaryFa" are created.
Author: Ying-Ying Zhang (Robert)
Maintainer: Ying-Ying Zhang (Robert)
ChangeLog |only
DESCRIPTION | 8 ++++----
MD5 | 27 ++++++++++++++-------------
R/AllClasses.R | 8 ++++++++
R/FaClassic.R | 8 ++++++--
R/FaCov.R | 8 ++++++--
R/factorScorePfa.R | 7 +++++--
R/utils.R | 36 +++++++++++++++++++++++++++++++-----
inst/doc/robustfa.Rnw | 2 +-
inst/doc/robustfa.pdf |binary
man/Fa-class.Rd | 4 ++++
man/computeScores.Rd | 14 ++++++++++++--
tests/testsRobustfa.R | 2 +-
vignettes/FaModel.pdf |binary
vignettes/robustfa.Rnw | 2 +-
15 files changed, 93 insertions(+), 33 deletions(-)
Title: Population and Evolutionary Genetics Analysis System
Diff between pegas versions 0.4-1 dated 2012-01-19 and 0.4-2 dated 2012-05-11
Description: pegas provides functions for reading, writing, plotting,
analysing, and manipulating allelic and haplotypic data, and
for the analysis of population nucleotide sequences including
coalescence analyses.
Author: Emmanuel Paradis, Alastair Potts
Maintainer: Emmanuel Paradis
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 14 ++++++++++++--
R/amova.R | 20 +++++++++++++-------
inst/doc/ReadingFiles.pdf |binary
5 files changed, 33 insertions(+), 17 deletions(-)
Title: Local principal curve methods
Diff between LPCM versions 0.44-5 dated 2011-09-28 and 0.44-6 dated 2012-05-11
Description: Fitting multivariate data patterns with local principal
curves; including simple tools for data compression
(projection), bandwidth selection, and measuring
goodness-of-fit.
Author: Jochen Einbeck and Ludger Evers
Maintainer:
DESCRIPTION | 9 +++++----
MD5 | 21 +++++++++++----------
NAMESPACE |only
R/Rc.R | 2 +-
R/coverage.r | 22 +++++++++++++++++-----
R/ms.r | 9 +++++----
data/calspeedflow.rda |binary
data/gaia.rda |binary
data/gvessel.rda |binary
man/LPCM-package.Rd | 4 ++--
man/coverage.Rd | 7 ++++---
man/lpc.Rd | 2 +-
12 files changed, 46 insertions(+), 30 deletions(-)
Title: Latent Variable Analysis
Diff between lavaan versions 0.4-13 dated 2012-04-10 and 0.4-14 dated 2012-05-11
Description: Fit a variety of latent variable models, including
confirmatory factor analysis, structural equation modeling and
latent growth curve models.
Author: Yves Rosseel
Maintainer: Yves Rosseel
DESCRIPTION | 6
MD5 | 78 +++++------
NAMESPACE | 1
R/00class.R | 25 ++-
R/01lavaanOptions.R | 11 -
R/02lavaanUser.R | 10 -
R/03lavaanSample.R | 160 +----------------------
R/04lavaanStart.R | 152 +++++++++++-----------
R/05lavaanModel.R | 94 +++++++-------
R/06lavaanEstimate.R | 104 +++++++--------
R/07lavaanVcov.R | 103 +++++++--------
R/08lavaanTest.R | 138 ++++++++++----------
R/09lavaanFit.R | 10 -
R/10lavaan-methods.R | 186 ++++++++++++---------------
R/InformativeTesting.R | 10 -
R/bootstrap.R | 95 +++++++-------
R/bootstrapLRT.R | 42 +++---
R/computeGammaAB.R | 38 ++---
R/export.R | 2
R/fit.measures.R | 42 +++---
R/independence.model.R | 76 +++++------
R/information.R | 65 ++++-----
R/lavData.R |only
R/lavaan.R | 240 +++++++++++++----------------------
R/missing.R | 8 -
R/modification.R | 36 ++---
R/predict.R | 10 -
R/reliability.R | 6
R/representation.LISREL.R | 20 +-
R/residuals.R | 34 ++---
R/simulate.R | 2
R/standardize.R | 308 +++++++++++++++++++++++-----------------------
R/utils-user.R | 232 +++++++++++++++++-----------------
inst |only
man/bootstrap.Rd | 5
man/cfa.Rd | 18 +-
man/growth.Rd | 18 +-
man/lavaan-class.Rd | 9 -
man/lavaan.Rd | 25 ++-
man/model.syntax.Rd | 4
man/sem.Rd | 18 +-
41 files changed, 1136 insertions(+), 1305 deletions(-)
Title: Model-Independent Particle Swarm Optimisation for Environmental
Models
Diff between hydroPSO versions 0.1-54-1 dated 2012-04-13 and 0.1-55 dated 2012-05-11
Description: This package implements a state-of-the-art version of the
Particle Swarm Optimisation (PSO) algorithm, with a special
focus on the calibration of environmental models. hydroPSO is
model-independent, allowing the user to easily interface any
model code with the calibration engine (PSO). hydroPSO includes
a series of controlling options and PSO variants to fine-tune
the performance of the calibration engine. An advanced
sensitivity analysis function together with user-friendly
plotting summaries facilitate the interpretation and assessment
of the calibration results. Bugs reports/comments/questions are
very welcomed.
Author: Mauricio Zambrano-Bigiarini [aut, cre] and Rodrigo Rojas [ctb]
Maintainer: Mauricio Zambrano-Bigiarini
hydroPSO-0.1-54-1/hydroPSO/CHANGELOG |only
hydroPSO-0.1-54-1/hydroPSO/WhatsNew.txt |only
hydroPSO-0.1-55/hydroPSO/ChangeLog |only
hydroPSO-0.1-55/hydroPSO/DESCRIPTION | 8 ++++----
hydroPSO-0.1-55/hydroPSO/MD5 | 21 ++++++++++-----------
hydroPSO-0.1-55/hydroPSO/NEWS | 17 ++++++++++++++++-
hydroPSO-0.1-55/hydroPSO/R/PSO_v2012.R | 14 ++++++++------
hydroPSO-0.1-55/hydroPSO/R/hydromod.R | 18 +++++++++++++-----
hydroPSO-0.1-55/hydroPSO/R/plot_out.R | 2 +-
hydroPSO-0.1-55/hydroPSO/R/plot_results.R | 2 +-
hydroPSO-0.1-55/hydroPSO/man/ReadPlot_out.Rd | 2 +-
hydroPSO-0.1-55/hydroPSO/man/ReadPlot_results.Rd | 2 +-
hydroPSO-0.1-55/hydroPSO/man/hydroPSO-package.Rd | 6 ++++--
13 files changed, 59 insertions(+), 33 deletions(-)
Title: Fisher-Wright Population Simulation
Diff between fwsim versions 0.2-3 dated 2012-04-01 and 0.2-5 dated 2012-05-11
Description: Simulates a population under the Fisher-Wright model with
a stepwise neutral mutation process. The population sizes are
random Poisson distributed and different kinds of population
growth are supported. It is possible to specify locus and
direction (in terms of upwards and downwards mutation rate)
specific mutation rate. Intermediate generations can be saved
in order to study e.g. drift.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen
DESCRIPTION | 11 ++--
MD5 | 24 ++++----
NEWS | 6 +-
R/fwsim.R | 65 ++++++++++++++++++++----
man/fwsim.Rd | 27 +++++-----
src/common.h | 2
src/fwsim.c | 153 +++++++++++++++++++++++++++++++++++++++++++++------------
src/fwsim.h | 1
src/kdtree.c | 3 -
src/mutation.c | 14 +++++
src/print.c | 4 -
src/sim.c | 103 +++++++++++++++++++++++++++++---------
src/sim.h | 3 -
13 files changed, 315 insertions(+), 101 deletions(-)
Title: RMAWGEN (R Multi-site Auto-regressive Weather GENerator): a
package to generate daily time series from monthly mean values
Diff between RMAWGEN versions 1.2.4 dated 2012-04-05 and 1.2.5 dated 2012-05-11
Description: This package contains S3 and S4 functions for spatial
multi-site stochastic generation of daily timeseries of
temperature and precipitation. The implemented tools make use
of Vectorial AutoRegressive models (VARs). The VAR is
calibrated by daily instrumental "Gaussinized" time series and
then works with monthly timeseries as input.
Bugs/comments/questions/collaboration of any kind are warmly
welcomed.
Author: Emanuele Cordano, Emanuele Eccel
Maintainer: Emanuele Cordano
DESCRIPTION | 22 ++++--
MD5 | 41 ++++++------
NAMESPACE | 1
R/ComprehensivePrecipitationGenerator.R | 58 ++++++++++++++++--
R/ComprehensiveTemperatureGenerator.R | 40 ++++++------
R/RMAWGEN-package.R | 2
R/generateTemperatureTimeseries.R | 6 -
R/newVARmultieventRealization.R | 7 +-
R/normalizeGaussian_prec.R | 24 +++++++
R/normalizeGaussian_sevaralstations_prec.R | 13 ++--
R/print.GPCAiteration.R | 7 +-
R/qqplot.lagged.R |only
R/qqplotTnTxWGEN.R | 4 -
R/setWholeTemperatureGeneratorParameters.R | 14 ++--
inst/doc/examples/precipitation-generator.R | 83 +++++++++++++++++++++-----
inst/doc/examples/temperature-generator.R | 10 +--
inst/doc/examples/trentino_map.R |only
man/ComprehensivePrecipitationGenerator.Rd | 8 ++
man/ComprehensiveTemperatureGenerator.Rd | 13 +---
man/RMAWGEN-package.Rd | 2
man/normalizeGaussian_prec.Rd | 24 ++++++-
man/normalizeGaussian_severalstations_prec.Rd | 21 +++---
man/qqplot.lagged.Rd |only
23 files changed, 283 insertions(+), 117 deletions(-)
Title: Process Data
Diff between processdata versions 0.8 dated 2012-03-02 and 0.8.1 dated 2012-05-11
Description: This package implements data structures for stochastic
process data, which consists of either discretely observed
continuous time processes, marked point processes or a
combination.
Author: Niels Richard Hansen
Maintainer: Niels Richard Hansen
DESCRIPTION | 8 +++----
MD5 | 14 ++++++-------
R/ContinuousProcess.R | 3 +-
R/MarkedPointProcess.R | 46 ++++++++++++++++++++++++++++++++-------------
R/ProcessPlotData.R | 5 +++-
inst/doc/Introduction.pdf |binary
man/markedPointProcess.Rd | 18 +++++++++--------
man/processdata-package.Rd | 4 +--
8 files changed, 62 insertions(+), 36 deletions(-)
Title: Tools for the analysis of air pollution data
Diff between openair versions 0.5-25 dated 2012-03-19 and 0.6-0 dated 2012-05-11
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically hourly time series and both monitoring
data and dispersion model output can be analysed. Many
functions can also be applied to other data, including
meteorological and traffic data.
Author: David Carslaw and Karl Ropkins
Maintainer: David Carslaw
DESCRIPTION | 10
MD5 | 75 ++--
NAMESPACE | 1
NEWS | 19 +
R/TaylorDiagram.R | 11
R/TheilSen.R | 11
R/calcFno2.R | 7
R/calendarPlot.R | 244 +++++++++------
R/checkPrep.R | 12
R/conditionalEval.R |only
R/conditionalQuantile.R | 39 +-
R/corPlot.R | 16 -
R/import.R | 695 +++++++--------------------------------------
R/importKCL.R | 43 ++
R/linearRelation.R | 11
R/modStats.R | 143 ++++-----
R/percentileRose.R | 10
R/polarAnnulus.R | 11
R/polarCluster.R | 10
R/polarFreq.R | 11
R/polarPlot.R | 11
R/quickText.R | 301 ++++++++-----------
R/scatterPlot.R | 11
R/smoothTrend.R | 13
R/summaryPlot.R | 28 +
R/timePlot.R | 21 -
R/timeVariation.R | 62 +---
R/trendLevel.R | 17 -
R/utilities.R | 9
R/windRose.R | 10
data/mydata.RData |binary
man/calcFno2.Rd | 4
man/calendarPlot.Rd | 57 ++-
man/conditionalEval.Rd |only
man/conditionalQuantile.Rd | 4
man/import.Rd | 268 +++++------------
man/importKCL.Rd | 6
man/smoothTrend.Rd | 4
man/timePlot.Rd | 11
openair.Rproj |only
40 files changed, 919 insertions(+), 1297 deletions(-)
Title: Tools for analysing forensic genetic DNA data
Diff between DNAtools versions 0.1-5 dated 2011-09-08 and 0.1-6 dated 2012-05-11
Description: Functions for making a database comparison exercise where
each DNA profile is compared to any other in the database. Also
has functions for optimising parameters of the population
genetic model and for simulating DNA databases.
Author: Torben Tvedebrink and James Curran. Multicore extension
contribution by Mikkel Meyer Andersen.
Maintainer: Torben Tvedebrink
DNAtools-0.1-5/DNAtools/inst/CITATION |only
DNAtools-0.1-5/DNAtools/inst/doc/DNAtools.tex |only
DNAtools-0.1-5/DNAtools/inst/doc/Makefile |only
DNAtools-0.1-5/DNAtools/inst/doc/caucasianObsExp.pdf |only
DNAtools-0.1-6/DNAtools/DESCRIPTION | 12 +-
DNAtools-0.1-6/DNAtools/MD5 | 26 ++--
DNAtools-0.1-6/DNAtools/R/rarity.R | 3
DNAtools-0.1-6/DNAtools/R/simulate.R | 103 ++++++++++++-------
DNAtools-0.1-6/DNAtools/R/variance.R | 2
DNAtools-0.1-6/DNAtools/inst/doc/DNAtools.pdf |binary
DNAtools-0.1-6/DNAtools/man/dbsimulate.Rd | 8 -
DNAtools-0.1-6/DNAtools/man/rarity.Rd | 4
DNAtools-0.1-6/DNAtools/man/rarityVar.Rd | 6 -
DNAtools-0.1-6/DNAtools/src/mcompare.cpp | 46 +++++---
DNAtools-0.1-6/DNAtools/vignettes |only
15 files changed, 131 insertions(+), 79 deletions(-)
Title: Data analysis for forensic scientists
Diff between dafs versions 1.0-36 dated 2011-03-21 and 1.0-37 dated 2012-05-11
Description: Data and miscellanea to support the book "Introduction to
Data analysis with R for Forensic Scientists", Curran, J.M.
2010 CRC Press ISBN: 978-1-4200-8826-7
Author: James Curran, Danny Chang
Maintainer: James Curran
dafs-1.0-36/dafs/data/abaz.df.txt |only
dafs-1.0-36/dafs/data/abduct.age.df.txt |only
dafs-1.0-36/dafs/data/anneal.df.txt |only
dafs-1.0-36/dafs/data/anscombe.df.txt |only
dafs-1.0-36/dafs/data/bennett.df.txt |only
dafs-1.0-36/dafs/data/bottle.df.txt |only
dafs-1.0-36/dafs/data/casework.df.txt |only
dafs-1.0-36/dafs/data/cck196.df.txt |only
dafs-1.0-36/dafs/data/cck45.df.txt |only
dafs-1.0-36/dafs/data/docexam.df.txt |only
dafs-1.0-36/dafs/data/dpd.df.txt |only
dafs-1.0-36/dafs/data/fiber.color.df.txt |only
dafs-1.0-36/dafs/data/gc.df.txt |only
dafs-1.0-36/dafs/data/ghb.df.txt |only
dafs-1.0-36/dafs/data/gustafson.df.txt |only
dafs-1.0-36/dafs/data/jauhari1.df.txt |only
dafs-1.0-36/dafs/data/jauhari2.df.txt |only
dafs-1.0-36/dafs/data/kent.df.txt |only
dafs-1.0-36/dafs/data/kerckring.df.txt |only
dafs-1.0-36/dafs/data/liver.df.txt |only
dafs-1.0-36/dafs/data/morphine.df.txt |only
dafs-1.0-36/dafs/data/nasal.spline.df.txt |only
dafs-1.0-36/dafs/data/newton.df.txt |only
dafs-1.0-36/dafs/data/nzglass.df.txt |only
dafs-1.0-36/dafs/data/palatal.df.txt |only
dafs-1.0-36/dafs/data/ri.calibration.df.txt |only
dafs-1.0-36/dafs/data/ri.calibration2.df.txt |only
dafs-1.0-36/dafs/data/salting1.df.txt |only
dafs-1.0-36/dafs/data/salting2.df.txt |only
dafs-1.0-36/dafs/data/sex.age.df.txt |only
dafs-1.0-36/dafs/data/shotgun.df.txt |only
dafs-1.0-36/dafs/data/squamous.df.txt |only
dafs-1.0-36/dafs/data/tryptase.df.txt |only
dafs-1.0-36/dafs/data/velocity.df.txt |only
dafs-1.0-36/dafs/data/vhcdt.df.txt |only
dafs-1.0-36/dafs/data/wong.df.txt |only
dafs-1.0-37/dafs/DESCRIPTION | 8 ++++----
dafs-1.0-37/dafs/MD5 |only
dafs-1.0-37/dafs/NAMESPACE |only
dafs-1.0-37/dafs/R/pairsDAFS.R | 10 ++++++++++
dafs-1.0-37/dafs/data/abaz.df.txt.gz |only
dafs-1.0-37/dafs/data/abduct.age.df.txt.gz |only
dafs-1.0-37/dafs/data/anneal.df.txt.gz |only
dafs-1.0-37/dafs/data/anscombe.df.txt.gz |only
dafs-1.0-37/dafs/data/bennett.df.txt.gz |only
dafs-1.0-37/dafs/data/bottle.df.txt.gz |only
dafs-1.0-37/dafs/data/casework.df.txt.gz |only
dafs-1.0-37/dafs/data/cck196.df.txt.gz |only
dafs-1.0-37/dafs/data/cck45.df.txt.gz |only
dafs-1.0-37/dafs/data/docexam.df.txt.gz |only
dafs-1.0-37/dafs/data/dpd.df.txt.gz |only
dafs-1.0-37/dafs/data/fiber.color.df.txt.gz |only
dafs-1.0-37/dafs/data/gc.df.txt.gz |only
dafs-1.0-37/dafs/data/ghb.df.txt.gz |only
dafs-1.0-37/dafs/data/gustafson.df.txt.gz |only
dafs-1.0-37/dafs/data/jauhari1.df.txt.gz |only
dafs-1.0-37/dafs/data/jauhari2.df.txt.gz |only
dafs-1.0-37/dafs/data/kent.df.txt.gz |only
dafs-1.0-37/dafs/data/kerckring.df.txt.gz |only
dafs-1.0-37/dafs/data/liver.df.txt.gz |only
dafs-1.0-37/dafs/data/morphine.df.txt.gz |only
dafs-1.0-37/dafs/data/nasal.spline.df.txt.gz |only
dafs-1.0-37/dafs/data/newton.df.txt.gz |only
dafs-1.0-37/dafs/data/nzglass.df.txt.gz |only
dafs-1.0-37/dafs/data/palatal.df.txt.gz |only
dafs-1.0-37/dafs/data/ri.calibration.df.txt.gz |only
dafs-1.0-37/dafs/data/ri.calibration2.df.txt.gz |only
dafs-1.0-37/dafs/data/salting1.df.txt.gz |only
dafs-1.0-37/dafs/data/salting2.df.txt.gz |only
dafs-1.0-37/dafs/data/sex.age.df.txt.gz |only
dafs-1.0-37/dafs/data/shotgun.df.txt.gz |only
dafs-1.0-37/dafs/data/squamous.df.txt.gz |only
dafs-1.0-37/dafs/data/tryptase.df.txt.gz |only
dafs-1.0-37/dafs/data/velocity.df.txt.gz |only
dafs-1.0-37/dafs/data/vhcdt.df.txt.gz |only
dafs-1.0-37/dafs/data/wong.df.txt.gz |only
76 files changed, 14 insertions(+), 4 deletions(-)
Title: Cross-validation tools for regression models
Diff between cvTools versions 0.3.0 dated 2012-03-05 and 0.3.1 dated 2012-05-11
Description: Tools that allow developers to write functions for
cross-validation with minimal programming effort and assist
users with model selection.
Author: Andreas Alfons
Maintainer: Andreas Alfons
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 8 ++++++++
R/cvTool.R | 20 ++------------------
R/cvTuning.R | 2 +-
man/cvTools-package.Rd | 4 ++--
6 files changed, 22 insertions(+), 30 deletions(-)