Wed, 06 Jun 2012

New package rriskDistributions with initial version 1.7
Package: rriskDistributions
Type: Package
Title: Collection of functions for fitting distributions (related to the 'rrisk' project)
Author: Natalia Belgorodski (STAT-UP Statistical Consulting, Germany), Matthias Greiner (Federal Institute for Risk Assessment, Germany), Kristin Tolksdorf (Federal Institute for Risk Assessment, Germany), Katharina Schueller (STAT-UP Statistical Consulting, Germany)
Maintainer: Federal Institute for Risk Assessment, Matthias Greiner
Description: Collection of functions for fitting distributions to given data or by known quantiles. Two main functions fit.perc() and fit.cont() provide users a GUI that allows to choose a most appropriate distribution without any knowledge of the R syntax.
License: GPL (>= 3)
LazyLoad: yes
URL: http://www.bfr.bund.de/cd/52158
Depends: R(>= 2.11.0), mc2d, eha, msm, tcltk, tkrplot
SystemRequirements: Tcl/Tk (>= 8.5), Tktable (>= 2.9)
Authors@R: c(person(given="Natalia", family="Belgorodski",email="belgorodski@stat-up.de",role=c("aut"),comment="STAT-UP Statistical Consulting"), person(given="Matthias", family="Greiner",email="matthias.greiner@bfr.bund.de",role=c("aut", "cre"),comment="Federal Institute for Risk Assessment, Germany"), person(given="Kristin", family="Tolksdorf",email="Kristin.tolksdorf@bfr.bund.de",role=c("aut"),comment="Federal Institute for Risk Assessment, Germany"), person(given="Katharina", family="Schueller",email="schueller@stat-up.de",role=c("aut"),comment="STAT-UP Statistical Consulting"))
Version: 1.7
Date: 2012-06-06
Collate: 'rriskDistributions-package.R' 'rriskDistributions_functions_v1.7.R'
Packaged: 2012-06-06 12:17:44 UTC; dzhunna
Repository: CRAN
Date/Publication: 2012-06-06 17:55:16

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Package VennDiagram updated to version 1.2.1 with previous version 1.2.0 dated 2012-04-29

Title: Generate high-resolution Venn and Euler plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros

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Package SpatialVx updated to version 0.1-2 with previous version 0.1-1 dated 2012-03-13

Title: Spatial Forecast Verification
Description: Functions to perform most of the spatial forecast verification methods carried out in the Spatial Forecast Verification Inter-Comparison Project (ICP), and a few others. This first version only has the neighborhood methods, but the next version will have many more.
Author: Eric Gilleland
Maintainer: Eric Gilleland

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Package R2Cuba updated to version 1.0-7 with previous version 1.0-6 dated 2010-09-02

Title: Multidimensional Numerical Integration
Description: R2Cuba implements four general-purpose multidimensional integration algorithms: Vegas, Suave, Divonne and Cuhre
Author: The Cuba library has been written by Thomas Hahn (http://wwwth.mppmu.mpg.de/members/hahn); Interface to R was written by Annie Bouvier and Kiên Kiêu
Maintainer: Annie Bouvier

Diff between R2Cuba versions 1.0-6 dated 2010-09-02 and 1.0-7 dated 2012-06-06

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Package pracma updated to version 1.1.0 with previous version 1.0.5 dated 2012-04-19

Title: Practical Numerical Math Functions
Description: Implementations of functions in numerical analysis as R scripts, with a special view on on optimization and time series routines. Uses Matlab/Octave function names where appropriate to simplify porting.
Author: Hans W Borchers
Maintainer: HwB

Diff between pracma versions 1.0.5 dated 2012-04-19 and 1.1.0 dated 2012-06-06

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Package iDEMO updated to version 0.2-01 with previous version 0.2-0 dated 2012-04-29

Title: integrated degradation models
Description: The package iDEMO written in R and R GUI is a tool to build a linear degradation model which can simultaneously consider the unit-to-unit variation, time-dependent structure and measurement error in the degradation paths. Moreover, we provide the maximum likelihood estimates (MLEs) of the unknown parameters, mean-time-to-failure (MTTF) and qth quantile, and their corresponding confidence intervals.
Author: Ya-Shan Cheng, Chien-Yu Peng
Maintainer: Ya-Shan Cheng

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Package x12 updated to version 1.0-2 with previous version 1.0-1 dated 2012-04-12

Title: X12 - wrapper function and structure for batch processing
Description: A wrapper function and GUI for the X12 binaries
Author: Alexander Kowarik , Angelika Meraner
Maintainer: Alexander Kowarik

Diff between x12 versions 1.0-1 dated 2012-04-12 and 1.0-2 dated 2012-06-06

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Package RXKCD updated to version 1.7-3 with previous version 1.7-2 dated 2012-04-18

Title: Get XKCD comic from R
Description: This package allows the visualization of your favorite XKCD comic strip directly from R. XKCD web comic content is provided under the Creative Commons Attribution-NonCommercial 2.5 License.
Author: Paolo Sonego
Maintainer: Paolo Sonego

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Package robustbase updated to version 0.9-2 with previous version 0.9-1 dated 2012-05-14

Title: Basic Robust Statistics
Description: "Essential" Robust Statistics. The goal is to provide tools allowing to analyze data with robust methods. This includes regression methodology including model selections and multivariate statistics where we strive to cover the book "Robust Statistics, Theory and Methods" by Maronna, Martin and Yohai; Wiley 2006.
Author: Original code by many authors, notably Peter Rousseeuw and Christophe Croux, see file 'Copyrights'; Valentin Todorov , Andreas Ruckstuhl , Matias Salibian-Barrera , Tobias Verbeke , Manuel Koller , Martin Maechler
Maintainer: Martin Maechler

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Package mc2d updated to version 0.1-13 with previous version 0.1-12 dated 2011-11-14

Title: Tools for Two-Dimensional Monte-Carlo Simulations
Description: Various distributions and utilities to ease the use of R to build and study Two-Dimensional Monte-Carlo simulations
Author: Regis Pouillot , Marie Laure Delignette-Muller and Jean-Baptiste Denis
Maintainer: Regis Pouillot

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New package spclust with initial version 1.0
Package: spclust
Type: Package
Title: Selective phenotyping for experimental crosses
Version: 1.0
Date: 2012-06-06
Author: Emma Huang
Maintainer: Emma Huang
Description: Selection of subsets of experimental crosses in order to maximize genetic diversity
License: GPL-2
LazyLoad: Yes
Depends: qtl, cluster
Suggests: qtlDesign, mpMap
Collate: 'plclust_in_colour.R' 'spclust.R' 'spclust2.R' 'spdist.R'
Packaged: 2012-06-06 04:36:23 UTC; hua032
Repository: CRAN
Date/Publication: 2012-06-06 05:59:05

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Package phyclust updated to version 0.1-12 with previous version 0.1-11 dated 2012-03-11

Title: Phylogenetic Clustering (Phyloclustering)
Description: Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source programs including ms (Hudson 2002), seq-gen (Rambaut and Grassly 1997), Hap-Clustering (Tzeng 2005) and PAML baseml (Yang 1997, 2007), for simulating data, additional analyses, and searching the best tree. See the phyclust website for more information, documentations and examples.
Author: Wei-Chen Chen and Karin S. Dorman
Maintainer: Wei-Chen Chen

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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_em.h                     |   14 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_em_control.c             |    2 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_em_fp.c                  |   20 
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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_em_step.c                |    2 
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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_em_tool.h                |    8 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_file_input.c             |   26 
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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_init_method.h            |    9 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_init_method_nj.c         |    6 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_init_procedure.c         |   19 
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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_logpL.h                  |    6 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_qmatrix.c                |    2 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_qmatrix_array.c          |    4 
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 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_convolution_logpL.c   |   88 +--
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_convolution_logpL.h   |    4 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_em.h                  |   10 
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_em_fp.c               |   32 -
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_pmatrix.c             |   74 +-
 phyclust-0.1-12/phyclust/src/phyclust/phyclust_se_pmatrix.h             |   20 
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 phyclust-0.1-12/phyclust/src/seq-gen/R_seq-gen.h                        |    3 
 phyclust-0.1-12/phyclust/src/seq-gen/aamodels.c                         |    3 
 phyclust-0.1-12/phyclust/src/seq-gen/evolve.c                           |    3 
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 phyclust-0.1-12/phyclust/src/seq-gen/nucmodels.c                        |    3 
 phyclust-0.1-12/phyclust/src/seq-gen/seq-gen.c                          |  211 +++++--
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 107 files changed, 1319 insertions(+), 954 deletions(-)

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New package mpMap with initial version 1.14
Package: mpMap
Type: Package
Title: Multi-parent RIL genetic analysis
Version: 1.14
Date: 2012-06-06
Author: Emma Huang
Maintainer: Emma Huang
Description: Tools for constructing linkage maps, reconstructing haplotypes, estimating linkage disequilibrium and QTL mapping in multi-parent RIL designs (e.g. MAGIC)
License: GPL-2
LazyLoad: yes
Depends: gdata, seriation, qtl, wgaim
Suggests: aod, asreml, happy.hbrem, Heatplus, MASS, VPdtw, lattice
Collate: 'add3pt.R' 'calc.genoprob2.R' 'calcmpprob.R' 'check-ped.R' 'check-QTL.R' 'clean.mpcross.R' 'cleanmap.R' 'cleanrf.R' 'combine-chr.R' 'combine-ibd.R' 'combine-ld.R' 'combine-rf.R' 'compare-orders.R' 'compute-bnld.R' 'compute-bnrf.R' 'computemap.R' 'convertped.R' 'CR-calcLD.R' 'CR-cross.R' 'CR-estrf.R' 'CR-gen-geno.R' 'fill.R' 'fillmiss.R' 'findqtl2.R' 'fit.mpqtl.R' 'gen4ped.R' 'gen8ped.R' 'generate-error.R' 'generate-obs.R' 'generate-pheno.R' 'getpval.R' 'mapcomp.R' 'maporder.R' 'mp-mapdist.R' 'mpadd.R' 'mpcalcld.R' 'mpcross.R' 'mpestrf.R' 'mpgroup.R' 'mpIM.R' 'mpMap-output.R' 'mporder.R' 'mpprob.R' 'mpsegrat.R' 'nai.R' 'plot.mpcross.R' 'plot.mpprob.R' 'plot.mpqtl.R' 'plotlink.map.R' 'print.mapcomp.R' 'print.mpcross.R' 'print.mpprob.R' 'print.mpqtl.R' 'qtlmap.R' 'read.mpcross.R' 'reorgRIgenoprob2.R' 'sim.mpcross.R' 'sim.mpped.R' 'sim.sigthr.R' 'subset.mpcross.R' 'subset.mpprob.R' 'summary.mpcross.R' 'summary.mpprob.R' 'summary.mpqtl.R' 'supportinterval.R' 'waldTests.R'
Packaged: 2012-06-06 04:42:08 UTC; hua032
Repository: CRAN
Date/Publication: 2012-06-06 05:59:03

More information about mpMap at CRAN
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New package complex.surv.dat.sim with initial version 1.0
Package: complex.surv.dat.sim
Type: Package
Title: Simulation of recurrent event survival data
Version: 1.0
Date: 2012-03-28
Encoding: latin1
Author: David Moriña, Centre Tecnològic de Nutrició i Salut and Albert Navarro, Universitat Autònoma de Barcelona
Maintainer: David Moriña
Description: Simulation of complex survival data
Depends: R (>= 2.13.1), eha
Repository: CRAN
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-06-05 16:07:47 UTC; dmorinya
Date/Publication: 2012-06-06 05:59:01

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Package sparkTable updated to version 0.9.4 with previous version 0.9.3 dated 2012-02-07

Title: Sparklines and graphical tables for tex and html
Description: Create Sparklines and graphical tables for documents and websites
Author: Alexander Kowarik, Bernhard Meindl, Matthias Templ
Maintainer: Alexander Kowarik , Bernhard Meindl , Matthias Templ

Diff between sparkTable versions 0.9.3 dated 2012-02-07 and 0.9.4 dated 2012-06-06

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Package gdata updated to version 2.10.0 with previous version 2.8.2 dated 2011-04-24

Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation
Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory Warnes

Diff between gdata versions 2.8.2 dated 2011-04-24 and 2.10.0 dated 2012-06-06

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Package faoutlier updated to version 0.2.3 with previous version 0.2.2 dated 2012-04-14

Title: Influential case detection methods for factor analysis and SEM
Description: Tools for detecting and summarize influential cases that can affect exploratory and confirmatory factor analysis models as well as structural equation models more generally.
Author: Phil Chalmers
Maintainer: Phil Chalmers

Diff between faoutlier versions 0.2.2 dated 2012-04-14 and 0.2.3 dated 2012-06-06

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 faoutlier-0.2.3/faoutlier/R/robustMD.R             |   31 +-
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More information about faoutlier at CRAN
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