Title: LaTeX Wrappers for R Users
Diff between lazyWeave versions 2.1.3 dated 2012-04-06 and 2.1.4 dated 2012-06-07
Description: Provides the functionality to write LaTeX code from within
R without having to learn LaTeX.
Author: Benjamin Nutter
Maintainer: Benjamin Nutter
DESCRIPTION | 8 ++--
MD5 | 13 ++++---
NAMESPACE | 4 ++
R/lazy.file.start.R | 87 ++++++++++++++++++++++++------------------------
R/lazy.insert.code.R |only
R/lazy.verbatim.end.R |only
R/lazy.verbatim.start.R |only
man/lazy.file.start.Rd | 3 +
man/lazy.insert.code.Rd |only
man/lazy.verbatim.Rd |only
10 files changed, 63 insertions(+), 52 deletions(-)
Title: Relative survival
Diff between relsurv versions 2.0-2 dated 2012-05-16 and 2.0-3 dated 2012-06-07
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre]
Maintainer: Maja Pohar Perme
relsurv-2.0-2/relsurv/src/netfast.c |only
relsurv-2.0-3/relsurv/DESCRIPTION | 8 -
relsurv-2.0-3/relsurv/MD5 | 8 -
relsurv-2.0-3/relsurv/R/Rcode.r | 148 ++++++++++++++++++++++++++++++-
relsurv-2.0-3/relsurv/src/netfastp.c |only
relsurv-2.0-3/relsurv/src/survprotomoj.h | 4
6 files changed, 155 insertions(+), 13 deletions(-)
Title: The R-to-MOSEK Optimization Interface
Diff between Rmosek versions 1.2.2 dated 2012-03-15 and 1.2.3 dated 2012-06-07
Description: Rmosek is an interface to the MOSEK Optimization Software
designed to solve large-scale mathematical optimization
problems. MOSEK provides specialized solvers for linear
programming, mixed integer programming and many types of
nonlinear convex optimization problems. Trial and free academic
licenses available at http://www.mosek.com.
Author: Henrik Alsing Friberg
Maintainer: Henrik Alsing Friberg
DESCRIPTION | 8
MD5 | 49 ++--
NEWS | 10
inst/doc/userguide.pdf |binary
inst/extdata/cqo1.opf | 18 -
src/Rmosek.cc | 38 ---
src/compatibility/cpp98_mosek.h |only
src/compatibility/fallbacks.cc | 4
src/compatibility/fallbacks.h | 47 ++--
src/compatibility/pkgMatrixVersion.h | 5
src/rmsk_globalvars.cc |only
src/rmsk_globalvars.h |only
src/rmsk_msg_base.cc | 38 +--
src/rmsk_msg_base.h | 4
src/rmsk_msg_mosek.h | 3
src/rmsk_numeric_casts.h | 407 +++++++++++++++++++++--------------
src/rmsk_obj_arguments.cc | 8
src/rmsk_obj_constraints.cc | 8
src/rmsk_obj_matrices.cc | 21 -
src/rmsk_obj_mosek.cc | 9
src/rmsk_obj_mosek.h | 1
src/rmsk_obj_sexp.cc | 50 +++-
src/rmsk_utils_interface.cc | 30 --
src/rmsk_utils_interface.h | 3
src/rmsk_utils_mosek.cc | 32 +-
src/rmsk_utils_scopt.cc | 132 +++++------
src/rmsk_utils_scopt.h | 67 ++---
27 files changed, 540 insertions(+), 452 deletions(-)
Title: Calculation of the Integrated Flow of Particles between Polygons
Diff between RCALI versions 0.2-2 dated 2012-02-01 and 0.2-5 dated 2012-06-07
Description: Calculate the flow of particles between polygons by two
integration methods: integration by a cubature method and
integration on a grid of points.
Author: Annie Bouvier, Kien Kieu, Kasia Adamczyk, and Herve Monod
Maintainer: Annie Bouvier
RCALI-0.2-2/RCALI/src/timing.cc |only
RCALI-0.2-2/RCALI/src/timing.h |only
RCALI-0.2-5/RCALI/.Rinstignore |only
RCALI-0.2-5/RCALI/DESCRIPTION | 11 +++---
RCALI-0.2-5/RCALI/MD5 | 33 ++++++++++----------
RCALI-0.2-5/RCALI/NEWS | 24 ++++++++++++++
RCALI-0.2-5/RCALI/R/califlopp.R | 2 -
RCALI-0.2-5/RCALI/R/fdispersions.R | 2 -
RCALI-0.2-5/RCALI/R/listpoly-methods.R | 3 -
RCALI-0.2-5/RCALI/inst/CITATION |only
RCALI-0.2-5/RCALI/inst/doc/RCALIvignette.pdf |binary
RCALI-0.2-5/RCALI/man/califlopp.Rd | 21 ++++--------
RCALI-0.2-5/RCALI/src/go.cc | 3 +
RCALI-0.2-5/RCALI/src/methodAdapt.cc | 6 +--
RCALI-0.2-5/RCALI/src/methodGrid.cc | 5 +--
RCALI-0.2-5/RCALI/tests/cte.Rout.save |only
RCALI-0.2-5/RCALI/tests/data.R | 6 +--
RCALI-0.2-5/RCALI/tests/data.Rout.save | 41 +++++--------------------
RCALI-0.2-5/RCALI/tests/disppollen.Rout.save |only
RCALI-0.2-5/RCALI/tests/dispseed.Rout.save |only
RCALI-0.2-5/RCALI/tests/fdispersions.Rout.save |only
RCALI-0.2-5/RCALI/tests/paysage.R | 8 ++--
22 files changed, 81 insertions(+), 84 deletions(-)
Title: Plot methods for computer experiments design and surrogate.
Diff between DiceView versions 1.2-0 dated 2012-03-29 and 1.2-1 dated 2012-06-07
Description: View 2D/3D sections or contours of computer experiments
designs, surrogates or test functions.
Author: Yann Richet, Yves Deville, Clement Chevalier
Maintainer: Yann Richet
DiceView-1.2-0/DiceView/.project |only
DiceView-1.2-1/DiceView/DESCRIPTION | 6 ++---
DiceView-1.2-1/DiceView/MD5 | 24 +++++++++++------------
DiceView-1.2-1/DiceView/R/contourview.fun.R | 12 ++++++-----
DiceView-1.2-1/DiceView/R/contourview.km.R | 12 ++++++-----
DiceView-1.2-1/DiceView/R/contourview.list.R | 10 +++++----
DiceView-1.2-1/DiceView/R/sectionview.fun.R | 19 ++++++++++++------
DiceView-1.2-1/DiceView/R/sectionview.km.R | 12 ++++++-----
DiceView-1.2-1/DiceView/R/sectionview.list.R | 10 +++++----
DiceView-1.2-1/DiceView/R/sectionview3d.fun.R | 2 -
DiceView-1.2-1/DiceView/R/sectionview3d.km.R | 2 -
DiceView-1.2-1/DiceView/man/contourview.fun.Rd | 7 ++----
DiceView-1.2-1/DiceView/man/sectionview.fun.Rd | 8 +++----
DiceView-1.2-1/DiceView/man/sectionview3d.fun.Rd | 7 ++----
14 files changed, 73 insertions(+), 58 deletions(-)
Title: Time-ordered and time-aggregated network analyses
Diff between timeordered versions 0.9 dated 2011-03-28 and 0.9.1 dated 2012-06-07
Description: Methods for incorporating time into network analysis.
Construction of time-ordered networks (temporal graphs).
Shortest-time and shortest-path-length analyses. Resource
spread calculations. Data resampling and rarefaction for null
model construction. Reduction to time-aggregated networks with
variable window sizes; application of common descriptive
statistics to these networks. Vector clock latencies. Plotting
functionalities & full compatibility with all network methods
in the igraph0 library.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder
DESCRIPTION | 14 +++++++-------
MD5 |only
man/applynetworkfunction.Rd | 12 +++---------
man/generatelatencies.Rd | 8 ++------
man/generatenetworkslices.Rd | 12 +++---------
man/generatetimeaggregatednetwork.Rd | 12 +++---------
man/generatetimedeltas.Rd | 12 +++---------
man/generatetimelags.Rd | 12 +++---------
man/generatetonetwork.Rd | 10 ++--------
man/generatetonetworkfromvel.Rd | 24 +++++-------------------
man/generatevertexedgelist.Rd | 24 +++++-------------------
man/maxpoints.Rd | 12 +++---------
man/midpoints.Rd | 12 +++---------
man/plotnetworkslices.Rd | 12 +++---------
man/plottanet.Rd | 12 +++---------
man/plottonet.Rd | 12 +++---------
man/randomizeidentities.Rd | 12 +++---------
man/randomizetimes.Rd | 12 +++---------
man/rarefy.Rd | 12 +++---------
man/shortesthoppath.Rd | 8 ++------
man/shortesttimepath.Rd | 8 ++------
man/spreadanalysis.Rd | 8 ++------
man/transformspreadbyindividual.Rd | 12 +++---------
23 files changed, 69 insertions(+), 203 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 0.2.4 dated 2012-05-09 and 0.2.5 dated 2012-06-07
Description: Analysis of dichotomous and polychotomous response data
using latent trait models under the Item Response Theory
paradigm. Includes the multivariate two- and three-parameter
logistic models, confirmatory bifactor analysis, polytomous
exploratory and confirmatory item response models which may
include polynomial or product constructed factors, and
partially-compensatory item response modeling in conjunction
with other IRT models.
Author: Phil Chalmers
Maintainer: Phil Chalmers
mirt-0.2.4/mirt/mirt.Rproj |only
mirt-0.2.5/mirt/DESCRIPTION | 6 -
mirt-0.2.5/mirt/MD5 | 39 +++----
mirt-0.2.5/mirt/NAMESPACE | 64 ++++++-------
mirt-0.2.5/mirt/NEWS | 47 ++++++++-
mirt-0.2.5/mirt/R/bfactor.R | 101 +++++++++++---------
mirt-0.2.5/mirt/R/confmirt.R | 4
mirt-0.2.5/mirt/R/fscores.R | 43 ++++----
mirt-0.2.5/mirt/R/logLik.R | 16 +--
mirt-0.2.5/mirt/R/mirt.R | 126 +++++++++++++------------
mirt-0.2.5/mirt/R/misc.R | 14 +-
mirt-0.2.5/mirt/R/polymirt.R | 40 ++++----
mirt-0.2.5/mirt/ToDo | 6 -
mirt-0.2.5/mirt/man/fscores-methods.Rd | 142 +++++++++++++++--------------
mirt-0.2.5/mirt/man/itemplot-methods.Rd | 102 ++++++++++----------
mirt-0.2.5/mirt/man/logLik-methods.Rd | 94 +++++++++----------
mirt-0.2.5/mirt/man/mirt.Rd | 25 +++--
mirt-0.2.5/mirt/man/mirtClass-class.Rd | 3
mirt-0.2.5/mirt/man/polymirt.Rd | 20 ++--
mirt-0.2.5/mirt/man/polymirtClass-class.Rd | 3
mirt-0.2.5/mirt/src/Estep.cpp | 2
21 files changed, 490 insertions(+), 407 deletions(-)
Title: Forecasting functions for time series and linear models
Diff between forecast versions 3.21 dated 2012-04-30 and 3.22 dated 2012-06-07
Description: Methods and tools for displaying and analysing univariate
time series forecasts including exponential smoothing via state
space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 6
DESCRIPTION | 8
MD5 | 24
R/arima.R | 1260 ++++++++++++++++++++++++-------------------------
R/bats.R | 24
R/checkAdmissibility.R | 4
R/etsforecast.R | 3
R/fitBATS.R | 13
R/fitTBATS.R | 10
R/makeParamVector.R | 36 +
R/tbats.R | 44 -
man/bats.Rd | 4
man/tbats.Rd | 6
13 files changed, 739 insertions(+), 703 deletions(-)
Title: Functional Data Analysis and Utilities for Statistical Computing
(fda.usc)
Diff between fda.usc versions 0.9.7 dated 2012-05-08 and 0.9.8 dated 2012-06-07
Description: This package implements functional data methods.
Author: Febrero-Bande, M. and Oviedo de la Fuente, M.
Maintainer: Oviedo de la Fuente, M.
fda.usc-0.9.7/fda.usc/R/fregre.kgam.R |only
fda.usc-0.9.7/fda.usc/Rplots.pdf |only
fda.usc-0.9.7/fda.usc/script/Classif_boosting.R |only
fda.usc-0.9.7/fda.usc/script/Classif_phoneme.R |only
fda.usc-0.9.8/fda.usc/DESCRIPTION | 10 -
fda.usc-0.9.8/fda.usc/MD5 | 106 ++++++------
fda.usc-0.9.8/fda.usc/NAMESPACE | 96 ++++++++++
fda.usc-0.9.8/fda.usc/NEWS | 5
fda.usc-0.9.8/fda.usc/R/flm.test.R |only
fda.usc-0.9.8/fda.usc/R/flm.test.auxiliary.functions.R |only
fda.usc-0.9.8/fda.usc/R/fregre.basis.R | 18 ++
fda.usc-0.9.8/fda.usc/R/fregre.basis.cv.R | 141 ++++++++--------
fda.usc-0.9.8/fda.usc/R/fregre.kgam.r |only
fda.usc-0.9.8/fda.usc/R/fregre.pc.cv.R | 94 ++++++----
fda.usc-0.9.8/fda.usc/R/predict.fregre.fd.R | 6
fda.usc-0.9.8/fda.usc/R/predict.fregre.kgam.R | 43 ++--
fda.usc-0.9.8/fda.usc/R/summary.fregre.fd.r | 14 -
fda.usc-0.9.8/fda.usc/man/CV.S.Rd | 13 -
fda.usc-0.9.8/fda.usc/man/Depth.Rd | 9 -
fda.usc-0.9.8/fda.usc/man/Descriptive.Rd | 42 ++--
fda.usc-0.9.8/fda.usc/man/GCV.S.Rd | 38 ++--
fda.usc-0.9.8/fda.usc/man/Kernel.Rd | 2
fda.usc-0.9.8/fda.usc/man/PCvM.statistic.Rd |only
fda.usc-0.9.8/fda.usc/man/anova.RPm.Rd | 4
fda.usc-0.9.8/fda.usc/man/classif.kgam.Rd | 20 +-
fda.usc-0.9.8/fda.usc/man/cond.quantile.Rd | 18 +-
fda.usc-0.9.8/fda.usc/man/depth.RPD.Rd | 28 +--
fda.usc-0.9.8/fda.usc/man/fda.usc-package.Rd | 6
fda.usc-0.9.8/fda.usc/man/fda.usc.internal.Rd | 5
fda.usc-0.9.8/fda.usc/man/fdata.bootstrap.Rd | 14 +
fda.usc-0.9.8/fda.usc/man/fdata2pls.Rd | 8
fda.usc-0.9.8/fda.usc/man/flm.test.Rd |only
fda.usc-0.9.8/fda.usc/man/fregre.basis.Rd | 30 ++-
fda.usc-0.9.8/fda.usc/man/fregre.basis.cv.Rd | 31 +--
fda.usc-0.9.8/fda.usc/man/fregre.bootstrap.Rd | 23 +-
fda.usc-0.9.8/fda.usc/man/fregre.glm.Rd | 19 +-
fda.usc-0.9.8/fda.usc/man/fregre.gsam.Rd | 149 +++++++----------
fda.usc-0.9.8/fda.usc/man/fregre.kgam.Rd | 54 ++++--
fda.usc-0.9.8/fda.usc/man/fregre.lm.Rd | 18 +-
fda.usc-0.9.8/fda.usc/man/fregre.np.Rd | 7
fda.usc-0.9.8/fda.usc/man/fregre.np.cv.Rd | 37 ++--
fda.usc-0.9.8/fda.usc/man/fregre.pc.Rd | 25 ++
fda.usc-0.9.8/fda.usc/man/fregre.pc.cv.Rd | 95 +++++++---
fda.usc-0.9.8/fda.usc/man/fregre.plm.Rd | 48 ++---
fda.usc-0.9.8/fda.usc/man/fregre.pls.Rd | 16 +
fda.usc-0.9.8/fda.usc/man/fregre.pls.cv.Rd | 47 +++--
fda.usc-0.9.8/fda.usc/man/int.simpson.Rd | 15 -
fda.usc-0.9.8/fda.usc/man/metric.lp.Rd | 16 +
fda.usc-0.9.8/fda.usc/man/min.basis.Rd | 19 --
fda.usc-0.9.8/fda.usc/man/min.np.Rd | 31 +--
fda.usc-0.9.8/fda.usc/man/predict.classif.Rd | 24 +-
fda.usc-0.9.8/fda.usc/man/predict.fregre.kgam.Rd | 41 ++--
fda.usc-0.9.8/fda.usc/man/predict.fregre.plm.Rd | 30 +--
fda.usc-0.9.8/fda.usc/man/rber.gold.Rd |only
fda.usc-0.9.8/fda.usc/man/semimetric.NPFDA.Rd | 4
fda.usc-0.9.8/fda.usc/man/summary.fdata.comp.Rd | 6
fda.usc-0.9.8/fda.usc/man/summary.fregre.fd.Rd | 15 -
fda.usc-0.9.8/fda.usc/man/summary.fregre.kgam.Rd | 9 -
fda.usc-0.9.8/fda.usc/src |only
59 files changed, 926 insertions(+), 623 deletions(-)
Title: Conditioned Latin Hypercube Sampling
Diff between clhs versions 0.4-3 dated 2012-01-13 and 0.5-0 dated 2012-06-07
Description: This package implements the conditioned Latin hypercube
sampling, as published by Minasny and McBratney (2006). This
method proposes to stratify sampling in presence of ancillary
data. An extension of this method, which propose to associate a
cost to each individual and take it into account during the
optimisation process, is also proposed (Roudier et al., 2012).
Author: Pierre Roudier
Maintainer: Pierre Roudier
DESCRIPTION | 17 ++--
MD5 | 27 ++++---
NAMESPACE | 32 ++++++++-
NEWS | 10 ++
R/AAAA.R | 2
R/clhs-internal.R | 1
R/clhs.R | 168 ++++++++++++++++++++++++++++++++----------------
R/plot.R | 121 +++++++++++++++++++++++++---------
R/utils.R | 2
inst/doc |only
man/cLHS_result.Rd | 3
man/clhs-package.Rd | 8 ++
man/clhs.Rd | 29 ++++++--
man/plot.cLHS_result.Rd | 4 -
14 files changed, 307 insertions(+), 117 deletions(-)
Title: Probabilistic Population Projection
Diff between bayesPop versions 0.2-2 dated 2012-04-19 and 2.0-2 dated 2012-06-07
Description: The package allows to generate population projections for
all countries of the world using several probabilistic
components, such as total fertility rate (TFR) and life
expectancy.
Author: Hana Sevcikova, Adrian Raftery
Maintainer: Hana Sevcikova
ChangeLog | 20
DESCRIPTION | 8
MD5 | 29 -
NAMESPACE | 20
R/aggregate.R |only
R/get_outputs.R | 33 +
R/plot_functions.R | 711 +++++++++++++++++++++++------------
R/predict.pop.R | 52 +-
inst/ex-data/popestimates_WAKing.txt |only
man/LOCATIONS.Rd | 2
man/bayesPop-package.Rd | 34 +
man/get.pop.prediction.Rd | 7
man/pop.aggregate.Rd |only
man/pop.pyramid.Rd | 139 +++++-
man/pop.trajectories.plot.Rd | 9
man/predict.pop.Rd | 2
tests/test_functions.R | 6
17 files changed, 751 insertions(+), 321 deletions(-)
Title: Graphical User Interface for bayesTFR, bayesLife and bayesPop
Diff between bayesDem versions 1.6-0 dated 2012-05-05 and 1.7-0 dated 2012-06-07
Description: Provides Graphical user interface for the packages
bayesTFR, bayesLife and bayesPop
Author: Hana Sevcikova
Maintainer: Hana Sevcikova
ChangeLog | 14 +++++
DESCRIPTION | 10 +--
MD5 | 16 ++---
R/e0-results.R | 16 ++++-
R/handlers_and_fncs.R | 3 -
R/pop-results.R | 132 ++++++++++++++++++++++++++++++++----------------
R/tfr-predict.R | 9 +--
R/tfr-results.R | 38 +++++++++++--
man/bayesDem-package.Rd | 4 -
9 files changed, 168 insertions(+), 74 deletions(-)
Title: Connects to Anametrix
Diff between anametrix versions 0.1 dated 2012-05-31 and 0.2 dated 2012-06-07
Description: Connects to Anametrix API and extracts data into R data
structure
Author: Roman Jugai
Maintainer: Roman Jugai
DESCRIPTION | 6 -
MD5 | 8 -
R/getAxDataset.R | 257 ++++++++++++++++++++++++++++++++++-------------
man/anametrix-package.Rd | 6 -
man/getAxDataset.Rd | 26 ++--
5 files changed, 210 insertions(+), 93 deletions(-)