Title: Network analysis and visualization
Diff between igraph versions 0.6 dated 2012-06-14 and 0.6-1 dated 2012-06-16
Description: Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
Author: Gabor Csardi
Maintainer: Gabor Csardi
igraph-0.6-1/igraph/DESCRIPTION | 6 +-
igraph-0.6-1/igraph/MD5 | 54 +++++++++---------
igraph-0.6-1/igraph/R/hrg.R | 8 +-
igraph-0.6-1/igraph/src/games.c | 35 +++++------
igraph-0.6-1/igraph/tests/add.edges.Rout | 2
igraph-0.6-1/igraph/tests/add.vertices.Rout | 2
igraph-0.6-1/igraph/tests/all.st.cuts.Rout | 2
igraph-0.6-1/igraph/tests/alpha.centrality.Rout | 2
igraph-0.6-1/igraph/tests/are.connected.Rout | 2
igraph-0.6-1/igraph/tests/arpack.Rout | 2
igraph-0.6-1/igraph/tests/articulation.points.Rout | 2
igraph-0.6-1/igraph/tests/as.directed.Rout | 2
igraph-0.6-1/igraph/tests/as.undirected.Rout | 2
igraph-0.6-1/igraph/tests/assortativity.Rout | 2
igraph-0.6-1/igraph/tests/attributes.Rout | 2
igraph-0.6-1/igraph/tests/authority.score.Rout | 2
igraph-0.6-1/igraph/tests/average.path.length.Rout | 2
igraph-0.6-1/igraph/tests/ba.game.Rout | 2
igraph-0.6-1/igraph/tests/betweenness.Rout | 2
igraph-0.6-1/igraph/tests/biconnected.components.Rout | 2
igraph-0.6-1/igraph/tests/bipartite.projection.Rout | 2
igraph-0.6-1/igraph/tests/bonpow.Rout | 2
igraph-0.6-1/igraph/tests/canonical.permutation.Rout | 2
igraph-0.6-1/igraph/tests/cliques.Rout | 2
igraph-0.6-1/igraph/tests/closeness.Rout | 2
igraph-0.6-1/igraph/tests/clusters.Rout | 2
igraph-0.6-1/igraph/tests/cohesive.blocks.Rout | 2
igraph-0.6-1/igraph/tests/communities.Rout.fail |only
igraph-0.6/igraph/tests/communities.Rout |only
29 files changed, 73 insertions(+), 76 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-9 dated 2012-04-20 and 0.9-10 dated 2012-06-16
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and
available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 10 ++--
MD5 | 66 +++++++++++++++--------------
R/adjust.esticon.R | 10 +++-
R/ancova.multcomp.R | 2
R/chisq.theo.multcomp.R | 2
R/cox.resid.R | 12 ++---
R/mat.cont.R |only
R/pairwise.perm.t.test.R |only
R/plotresid.R | 14 ++----
R/scat.mix.categorical.R | 11 ++--
R/zzz.R | 2
RVAideMemoire-Ex.R | 94 +++++++++++++++++++++++++++++++++---------
man/RVAideMemoire-package.Rd | 4 -
man/adjust.esticon.Rd | 6 +-
man/chisq.bintest.Rd | 2
man/chisq.theo.multcomp.Rd | 2
man/cochran.qtest.Rd | 4 -
man/cor.multcomp.Rd | 2
man/cox.resid.Rd | 2
man/cramer.coeff.Rd | 2
man/fisher.multcomp.Rd | 3 -
man/logis.noise.Rd | 2
man/lr.multcomp.Rd | 2
man/mat.cont.Rd |only
man/pairwise.perm.t.test.Rd |only
man/perm.anova.Rd | 20 +-------
man/perm.bartlett.test.Rd | 2
man/perm.t.test.Rd | 2
man/perm.var.test.Rd | 2
man/plotresid.Rd | 8 +--
man/print.bootstrap.Rd | 1
man/reg.intcomp.Rd | 2
man/reg.slpcomp.Rd | 2
man/surv.multcomp.Rd | 4 -
man/wilcox.paired.multcomp.Rd | 4 -
man/wilcox.signtest.Rd | 2
36 files changed, 176 insertions(+), 127 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 1.0-6 dated 2012-03-31 and 1.0-7 dated 2012-06-16
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
Author: Douglas Bates
Maintainer: Doug and Martin
ChangeLog | 35 +++++++++
DESCRIPTION | 10 +-
MD5 | 89 ++++++++++++------------
NAMESPACE | 4 +
R/AllClass.R | 2
R/AllGeneric.R | 1
R/Auxiliaries.R | 10 ++
R/CHMfactor.R | 65 +++++++++++++----
R/Csparse.R | 10 +-
R/Matrix.R | 55 +++++++++++++-
R/Tsparse.R | 8 +-
R/bind2.R | 6 -
R/diagMatrix.R | 4 -
R/dsCMatrix.R | 14 +++
R/dtrMatrix.R | 18 +---
R/products.R | 14 ---
R/sparseMatrix.R | 16 ++--
TODO | 71 ++++++++++++-------
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf |binary
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/include/Matrix_stubs.c | 13 +++
inst/include/cholmod.h | 2
inst/test-tools-1.R | 22 +++++
inst/test-tools-Matrix.R | 4 -
man/CHMfactor-class.Rd | 36 +++++++--
man/Cholesky.Rd | 33 ++++++++
man/chol.Rd | 12 +++
man/expand.Rd | 4 -
man/sparseMatrix.Rd | 6 +
man/updown.Rd |only
src/CHMfactor.c | 24 +++++-
src/CHMfactor.h | 1
src/Csparse.c | 11 +-
src/Mutils.c | 98 --------------------------
src/Mutils.h | 10 --
src/dgeMatrix.c | 83 ++++++++++++++++++----
src/dsCMatrix.c | 1
src/dsyMatrix.c | 2
src/init.c | 5 -
src/t_Csparse_subassign.c | 95 +++++++++++++------------
tests/factorizing.R | 24 ++++--
tests/matprod.R | 162 +++++++++++++++++++++++++++++++++-----------
tests/validObj.R | 2
46 files changed, 693 insertions(+), 389 deletions(-)
Title: The Cross-match Test
Diff between crossmatch versions 1.1 dated 2011-10-17 and 1.3-1 dated 2012-06-16
Description: This package performs a test for comparing two
multivariate distributions by using the distance between
observations. The input is a distance matrix and the labels of
the two groups to be compared, the output is the number of
cross-matches and a p-value.
Author: Ruth Heller
Maintainer: Ruth Heller
DESCRIPTION | 13 +++---
MD5 | 13 +++---
NAMESPACE |only
R/crossmatchdist.R | 46 +++++++++++++----------
R/crossmatchtest.R | 91 ++++++++++++++++++++++++++--------------------
man/crossmatch-package.Rd | 71 ++++++++++++++++++-----------------
man/crossmatchdist.Rd | 21 ++++------
man/crossmatchtest.Rd | 57 ++++++++++++++--------------
8 files changed, 166 insertions(+), 146 deletions(-)