Title: Tools for importing files in the triple-s .(Standard Survey
Structure) format
Diff between sss versions 0.0-08 dated 2011-11-02 and 0.0-10 dated 2012-06-20
Description: sss is a set of tools to import survey files in the .sss
(triple-s) format. It provides the function read.sss that reads
the .asc and .sss files of a triple-s survey data file. The
package is experimental - feedback, issues and bug reports are
welcome.
Author: Andrie de Vries
Maintainer: Andrie de Vries
sss-0.0-08/sss/.metadata |only
sss-0.0-08/sss/.roxygen |only
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sss-0.0-10/sss/.project |only
sss-0.0-10/sss/DESCRIPTION | 18 +++++++++---------
sss-0.0-10/sss/MD5 | 24 +++++++++++-------------
sss-0.0-10/sss/NEWS | 7 +++++++
sss-0.0-10/sss/R/sss-package.R | 4 ++--
sss-0.0-10/sss/inst/doc/sss.Rnw | 13 ++-----------
sss-0.0-10/sss/inst/doc/sss.pdf |binary
sss-0.0-10/sss/man/fast.read.fwf.Rd | 4 ++--
sss-0.0-10/sss/man/sss-package.Rd | 1 -
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18 files changed, 33 insertions(+), 38 deletions(-)
Title: Toolkit implementation of gWidgets for tcltk package
Diff between gWidgetstcltk versions 0.0-51 dated 2012-06-09 and 0.0-52 dated 2012-06-20
Description: Port of the gWidgets API to the tcltk package. Requires TK
8.5 or greater for the tile (ttk)widgets
http://www.tcl.tk/software/tcltk/8.5.tml. This is the default
on Windows. Under linux, Tk must be installed. Under Mac OS X
(10.5) there are two options: native Tk or X11. For the native
one, Tk must be upgraded. See www.tcl.tk to download source.
Under the Mac it compiles and installs cleanly. For X11, tcltk
libraries can be downloaded to augment the R binary package.
See http://cran.r-project.org/bin/macosx/tools/. The gdf
function requires the add on Tk package TkTable
(http://tktable.sourceforge.net/).
Author: John Verzani
Maintainer: John Verzani
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/zzz.R | 2 +-
tests/RunTests.R | 2 +-
tests/runRUnit.R | 22 +++++++++++-----------
5 files changed, 20 insertions(+), 20 deletions(-)
Title: rcdk - Interface to the CDK Libraries
Diff between rcdk versions 3.1.7 dated 2012-02-27 and 3.1.8.1 dated 2012-06-20
Description: This package allows the user to access functionality in
the CDK, a Java framework for cheminformatics. This allows the
user to load molecules, evaluate fingerprints, calculate
molecular descriptors and so on. In addition the CDK API
allows the user to view structures in 2D.
Author: Rajarshi Guha
Maintainer: Rajarshi Guha
rcdk-3.1.7/rcdk/ChangeLog |only
rcdk-3.1.8.1/rcdk/CHANGELOG |only
rcdk-3.1.8.1/rcdk/DESCRIPTION | 12 ++---
rcdk-3.1.8.1/rcdk/MD5 | 24 +++++-----
rcdk-3.1.8.1/rcdk/R/atoms.R | 24 ++++++++++
rcdk-3.1.8.1/rcdk/R/desc.R | 6 --
rcdk-3.1.8.1/rcdk/R/formula.R | 8 +--
rcdk-3.1.8.1/rcdk/R/props.R | 15 ++++--
rcdk-3.1.8.1/rcdk/R/rcdk.R | 57 ++++++++++++++-----------
rcdk-3.1.8.1/rcdk/R/smiles.R | 2
rcdk-3.1.8.1/rcdk/inst/cont/rcdk.jar |binary
rcdk-3.1.8.1/rcdk/inst/doc/rcdk.pdf |binary
rcdk-3.1.8.1/rcdk/inst/unitTests/runit.frags.R | 2
rcdk-3.1.8.1/rcdk/man/atoms.Rd | 9 +++
14 files changed, 101 insertions(+), 58 deletions(-)
Title: Phylogenetic Monte Carlo
Diff between pmc versions 0.0-5 dated 2012-03-01 and 0.0-7 dated 2012-06-20
Description: Monte Carlo based model choice for applied phylogenetics
of continuous traits
Author: Carl Boettiger
Maintainer: Carl Boettiger
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pmc-0.0-7/pmc/MD5 | 148 ++--
pmc-0.0-7/pmc/NEWS | 18
pmc-0.0-7/pmc/R/pmc.R | 99 ++
pmc-0.0-7/pmc/R/wrappers_geiger.R | 6
pmc-0.0-7/pmc/README.md | 15
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pmc-0.0-7/pmc/inst/doc/pmc_tutorial/pmc_tutorial.pdf |binary
pmc-0.0-7/pmc/inst/doc/pmc_tutorial/pmc_tutorial.tex | 365 +++-------
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Title: rcdklib - CDK libraries packaged for R
Diff between rcdklibs versions 1.4.7 dated 2012-02-27 and 1.5.0 dated 2012-06-20
Description: This package provides the CDK libraries for use in the R
environment. Given the size of the library itself, this package
is not expected to change very frequently. To make use of the
CDK within R, it is suggested that you use the rcdk package.
Note that it is possible to directly interact with the CDK
using rJava. However rcdk exposes functionality in a more
idiomatic way
Author: Rajarshi Guha
Maintainer: Rajarshi Guha
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
inst/cont/cdk.jar |binary
3 files changed, 6 insertions(+), 6 deletions(-)
Title: Significance tests for palaeoenvironmental reconstructions
Diff between palaeoSig versions 1.0 dated 2011-02-14 and 1.1-1 dated 2012-06-20
Description: Tests if quantitative palaeoenvironmental reconstructions
are statistically significant.
Author: Richard Telford
Maintainer: Richard Telford
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palaeoSig-1.1-1/palaeoSig/inst/NEWS.Rd |only
palaeoSig-1.1-1/palaeoSig/man/Hill.N2.core.Rd | 3
palaeoSig-1.1-1/palaeoSig/man/anamorph.Rd |only
palaeoSig-1.1-1/palaeoSig/man/arctic.pollen.Rd |only
palaeoSig-1.1-1/palaeoSig/man/jointsig.Rd |only
palaeoSig-1.1-1/palaeoSig/man/mat.h.Rd |only
palaeoSig-1.1-1/palaeoSig/man/multi.mat.Rd |only
palaeoSig-1.1-1/palaeoSig/man/obs.cor.Rd | 85 ++++++++++++---------
palaeoSig-1.1-1/palaeoSig/man/palaeoSig-package.Rd | 31 ++++++-
palaeoSig-1.1-1/palaeoSig/man/randomTF.Rd | 27 +++---
palaeoSig-1.1-1/palaeoSig/man/rne.Rd |only
palaeoSig-1.1-1/palaeoSig/man/rotate.Rd |only
palaeoSig-1.1-1/palaeoSig/man/simulateSpatial.Rd |only
37 files changed, 229 insertions(+), 88 deletions(-)
Title: Network analysis and visualization
Diff between igraph versions 0.6-1 dated 2012-06-16 and 0.6-2 dated 2012-06-20
Description: Routines for simple graphs and network analysis. igraph
can handle large graphs very well and provides functions for
generating random and regular graphs, graph visualization,
centrality indices and much more.
Author: Gabor Csardi
Maintainer: Gabor Csardi
DESCRIPTION | 9 +++++----
MD5 | 4 ++--
src/rinterface.c | 19 +++++++++++++------
3 files changed, 20 insertions(+), 12 deletions(-)
Title: Package development utilities
Diff between pkgmaker versions 0.5.1 dated 2012-05-31 and 0.6.5 dated 2012-06-20
Description: This package provides some low-level utilities to use for
package development. It currently provides managers for
multiple package specific options and registries, vignette,
unit test and bibtex related utilities. It serves as a base
package for packages like NMF, RcppOctave, doRNG, and as an
incubator package for other general purposes utilities, that
will eventually be packaged separately. It is still under
heavy development and changes in the interface(s) are more than
likely to happen.
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
DESCRIPTION | 20 +-
MD5 | 38 ++--
NAMESPACE | 22 ++
R/bibtex.R | 124 ++++++++++-----
R/data.R |only
R/devutils.R | 76 ++++++++-
R/files.R | 21 ++
R/is.R | 32 ++-
R/unitTests.R | 102 +++++++-----
R/utils.R | 35 ----
R/vignette.R | 391 +++++++++++++++++++++++++++++++++++++++++++++++-
README.md |only
inst/vignette.mk |only
man/addnames.Rd |only
man/bibtex.Rd |only
man/cite.Rd | 8
man/devutils.Rd | 21 ++
man/exitCheck.Rd | 4
man/file_extension.Rd |only
man/is_something.Rd | 5
man/latex.Rd |only
man/makeUnitVignette.Rd | 4
man/vignette.Rd |only
man/write.bib.Rd | 6
24 files changed, 744 insertions(+), 165 deletions(-)
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.2-2 dated 2012-05-17 and 0.2-3 dated 2012-06-20
Description: Package provides the estimation of the structure and the
parameters, simulation methods and structural plots of
high-dimensional Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Alexander Ristig
HAC-0.2-2/HAC/man/rAC.Rd |only
HAC-0.2-3/HAC/ChangeLog.txt | 10 +
HAC-0.2-3/HAC/DESCRIPTION | 8 -
HAC-0.2-3/HAC/MD5 | 35 ++---
HAC-0.2-3/HAC/NAMESPACE | 4
HAC-0.2-3/HAC/R/copula_aggregate.r | 6
HAC-0.2-3/HAC/R/copula_cdf.r | 63 +++++-----
HAC-0.2-3/HAC/R/copula_constructor.r | 10 -
HAC-0.2-3/HAC/R/copula_empirical.r | 9 -
HAC-0.2-3/HAC/R/copula_estimate.r | 217 +++++++++++++++++++++++------------
HAC-0.2-3/HAC/R/copula_functions.r | 7 -
HAC-0.2-3/HAC/R/copula_pdf.r | 61 +++++----
HAC-0.2-3/HAC/R/copula_plot.r | 36 ++---
HAC-0.2-3/HAC/R/copula_simulate.r | 83 ++++++-------
HAC-0.2-3/HAC/R/tree2str.r | 5
HAC-0.2-3/HAC/man/Definitions.Rd | 5
HAC-0.2-3/HAC/man/dHAC.Rd | 6
HAC-0.2-3/HAC/man/estimate.copula.Rd | 5
HAC-0.2-3/HAC/man/hac.Rd | 2
19 files changed, 333 insertions(+), 239 deletions(-)
Title: Various R programming tools
Diff between gtools versions 2.6.2 dated 2010-05-02 and 2.7.0 dated 2012-06-20
Description: Various R programming tools
Author: Gregory R. Warnes. Includes R source code and/or documentation
contributed by Ben Bolker and Thomas Lumley
Maintainer: Gregory R. Warnes
ChangeLog | 355 +++++++++++++++----------------------------------------
DESCRIPTION | 8 -
MD5 |only
NEWS | 24 +++
R/addLast.R | 8 -
R/mixedsort.R | 4
R/running.R | 14 +-
R/smartbind.R | 127 +++++++++++++++++--
inst/ChangeLog | 355 +++++++++++++++----------------------------------------
inst/NEWS | 24 +++
man/smartbind.Rd | 11 +
11 files changed, 383 insertions(+), 547 deletions(-)
Title: Various R programming tools for data manipulation
Diff between gdata versions 2.10.6 dated 2012-06-13 and 2.11.0 dated 2012-06-20
Description: Various R programming tools for data manipulation
Author: Gregory R. Warnes, with contributions from Ben Bolker, Gregor
Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don
MacQueen, Arni Magnusson, Jim Rogers, and others
Maintainer: Gregory Warnes
ChangeLog | 22 ++++++++++++++++++++++
DESCRIPTION | 7 ++++---
MD5 | 30 +++++++++++++++---------------
NEWS | 18 ++++++++++++++++++
R/xls2sep.R | 38 +++++++++++++++++++++++++++++---------
inst/ChangeLog | 22 ++++++++++++++++++++++
inst/NEWS | 18 ++++++++++++++++++
inst/doc/mapLevels.pdf |binary
inst/doc/unknown.pdf |binary
inst/perl/xls2csv.pl | 30 +++++++++++++++++++-----------
inst/perl/xls2tab.pl | 30 +++++++++++++++++++-----------
inst/perl/xls2tsv.pl | 30 +++++++++++++++++++-----------
inst/xls/ExampleExcelFile.xls |binary
man/read.xls.Rd | 15 +++++++++------
tests/test.read.xls.R | 18 ++++++++++++++++++
tests/test.read.xls.Rout.save | 32 +++++++++++++++++++++++++++++++-
16 files changed, 243 insertions(+), 67 deletions(-)
Title: A gallery of animations in statistics and utilities to create
animations
Diff between animation versions 2.0-6 dated 2011-11-20 and 2.1 dated 2012-06-20
Description: This package contains various functions for animations in
statistics, covering many areas such as probability theory,
mathematical statistics, multivariate statistics, nonparametric
statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning.
These functions might be of help in teaching statistics and
data analysis. Also provided in this package are several
approaches to save animations to various formats, e.g. Flash,
GIF, HTML pages, PDF and videos (saveSWF(), saveGIF(),
saveHTML(), saveLatex(), and saveVideo() respectively). PDF
animations can be inserted into Sweave easily.
Author: Yihui Xie
Maintainer: Yihui Xie
animation-2.0-6/animation/README |only
animation-2.1/animation/DESCRIPTION | 38 -
animation-2.1/animation/MD5 | 218 +++++-----
animation-2.1/animation/NEWS | 8
animation-2.1/animation/R/BM.circle.R | 36 -
animation-2.1/animation/R/MC.hitormiss.R | 64 +--
animation-2.1/animation/R/MC.samplemean.R | 90 ++--
animation-2.1/animation/R/Rosling.bubbles.R | 185 +++------
animation-2.1/animation/R/ani.options.R | 370 +++++++++---------
animation-2.1/animation/R/ani.pause.R | 46 +-
animation-2.1/animation/R/ani.record.R | 116 ++---
animation-2.1/animation/R/ani.start.R | 68 +--
animation-2.1/animation/R/ani.stop.R | 34 -
animation-2.1/animation/R/animation-defunct.R | 40 +-
animation-2.1/animation/R/animation-package.R | 456 +++++++++++------------
animation-2.1/animation/R/bisection.method.R | 92 ++--
animation-2.1/animation/R/boot.iid.R | 107 ++---
animation-2.1/animation/R/boot.lowess.R | 31 -
animation-2.1/animation/R/brownian.motion.R | 59 +-
animation-2.1/animation/R/buffon.needle.R | 120 +++---
animation-2.1/animation/R/clt.ani.R | 96 ++--
animation-2.1/animation/R/conf.int.R | 137 +++---
animation-2.1/animation/R/cv.ani.R | 72 +--
animation-2.1/animation/R/cv.nfeaturesLDA.R | 124 +++---
animation-2.1/animation/R/ecol.death.sim.R | 86 ++--
animation-2.1/animation/R/flip.coin.R | 88 ++--
animation-2.1/animation/R/g.brownian.motion.R | 78 +--
animation-2.1/animation/R/grad.desc.R | 144 +++----
animation-2.1/animation/R/im.convert.R | 174 ++++----
animation-2.1/animation/R/kfcv.R | 42 +-
animation-2.1/animation/R/kmeans.ani.R | 92 ++--
animation-2.1/animation/R/knn.ani.R | 118 ++---
animation-2.1/animation/R/least.squares.R | 106 ++---
animation-2.1/animation/R/lln.ani.R | 72 +--
animation-2.1/animation/R/moving.block.R | 80 ++--
animation-2.1/animation/R/mwar.ani.R | 68 +--
animation-2.1/animation/R/newton.method.R | 100 ++---
animation-2.1/animation/R/pdftk.R | 52 +-
animation-2.1/animation/R/price.ani.R | 34 -
animation-2.1/animation/R/qpdf.R | 44 +-
animation-2.1/animation/R/quincunx.R | 72 +--
animation-2.1/animation/R/sample.cluster.R | 86 ++--
animation-2.1/animation/R/sample.ratio.R | 110 ++---
animation-2.1/animation/R/sample.simple.R | 68 +--
animation-2.1/animation/R/sample.strat.R | 86 ++--
animation-2.1/animation/R/sample.system.R | 69 +--
animation-2.1/animation/R/saveGIF.R | 211 +++++-----
animation-2.1/animation/R/saveHTML.R | 360 ++++++++----------
animation-2.1/animation/R/saveLatex.R | 441 ++++++++++------------
animation-2.1/animation/R/saveSWF.R | 259 ++++++-------
animation-2.1/animation/R/saveVideo.R | 190 ++++-----
animation-2.1/animation/R/sim.qqnorm.R | 52 +-
animation-2.1/animation/R/vi.grid.illusion.R | 89 ++--
animation-2.1/animation/R/vi.lilac.chaser.R | 72 +--
animation-2.1/animation/R/zzz.R | 25 -
animation-2.1/animation/demo/Mandelbrot.R | 2
animation-2.1/animation/demo/busybees.R | 2
animation-2.1/animation/demo/fire.R | 2
animation-2.1/animation/man/BM.circle.Rd | 10
animation-2.1/animation/man/CLELAL09.Rd | 8
animation-2.1/animation/man/HuSpeech.Rd | 8
animation-2.1/animation/man/MC.hitormiss.Rd | 16
animation-2.1/animation/man/MC.samplemean.Rd | 19
animation-2.1/animation/man/ObamaSpeech.Rd | 8
animation-2.1/animation/man/Rosling.bubbles.Rd | 37 -
animation-2.1/animation/man/ani.options.Rd | 28 -
animation-2.1/animation/man/ani.pause.Rd | 3
animation-2.1/animation/man/ani.record.Rd | 3
animation-2.1/animation/man/ani.start.Rd | 3
animation-2.1/animation/man/animation-package.Rd | 36 -
animation-2.1/animation/man/bisection.method.Rd | 14
animation-2.1/animation/man/boot.iid.Rd | 25 -
animation-2.1/animation/man/boot.lowess.Rd | 10
animation-2.1/animation/man/brownian.motion.Rd | 17
animation-2.1/animation/man/buffon.needle.Rd | 27 -
animation-2.1/animation/man/clt.ani.Rd | 23 -
animation-2.1/animation/man/conf.int.Rd | 19
animation-2.1/animation/man/convert.Rd | 7
animation-2.1/animation/man/cv.ani.Rd | 15
animation-2.1/animation/man/cv.nfeaturesLDA.Rd | 18
animation-2.1/animation/man/ecol.death.sim.Rd | 11
animation-2.1/animation/man/flip.coin.Rd | 24 -
animation-2.1/animation/man/g.brownian.motion.Rd | 5
animation-2.1/animation/man/grad.desc.Rd | 33 -
animation-2.1/animation/man/iatemp.Rd | 5
animation-2.1/animation/man/kmeans.ani.Rd | 14
animation-2.1/animation/man/knn.ani.Rd | 34 -
animation-2.1/animation/man/least.squares.Rd | 18
animation-2.1/animation/man/lln.ani.Rd | 19
animation-2.1/animation/man/moving.block.Rd | 74 +--
animation-2.1/animation/man/mwar.ani.Rd | 25 -
animation-2.1/animation/man/newton.method.Rd | 27 -
animation-2.1/animation/man/pageview.Rd | 5
animation-2.1/animation/man/pollen.Rd | 8
animation-2.1/animation/man/price.ani.Rd | 8
animation-2.1/animation/man/quincunx.Rd | 19
animation-2.1/animation/man/sample.cluster.Rd | 13
animation-2.1/animation/man/sample.ratio.Rd | 31 -
animation-2.1/animation/man/sample.simple.Rd | 12
animation-2.1/animation/man/sample.strat.Rd | 13
animation-2.1/animation/man/sample.system.Rd | 15
animation-2.1/animation/man/saveGIF.Rd | 25 -
animation-2.1/animation/man/saveHTML.Rd | 64 +--
animation-2.1/animation/man/saveLatex.Rd | 35 -
animation-2.1/animation/man/saveSWF.Rd | 19
animation-2.1/animation/man/saveVideo.Rd | 18
animation-2.1/animation/man/sim.qqnorm.Rd | 19
animation-2.1/animation/man/vanke1127.Rd | 19
animation-2.1/animation/man/vi.grid.illusion.Rd | 10
animation-2.1/animation/man/vi.lilac.chaser.Rd | 8
animation-2.1/animation/readme.md |only
111 files changed, 3459 insertions(+), 3706 deletions(-)