Title: Dynamic Deterministic Effects Propagation Networks: Infer
signalling networks for timecourse RPPA data.
Diff between ddepn versions 2.1 dated 2012-04-16 and 2.1.2 dated 2012-06-21
Description: DDEPN (Dynamic Deterministic Effects Propagation
Networks): Infer signalling networks for timecourse data. Given
a matrix of high-throughput genomic or proteomic timecourse
data, generated after external perturbation of the biological
system, DDEPN models the time-dependent propagation of active
and passive states depending on a network structure. Optimal
network structures given the experimental data are
reconstructed. Two network inference algorithms can be used:
inhibMCMC, a Markov Chain Monte Carlo sampling approach and GA,
a Genetic Algorithm network optimisation. Inclusion of prior
biological knowledge can be done using different network prior
models.
Author: Christian Bender
Maintainer: Christian Bender
DESCRIPTION | 12 +++++++-----
MD5 | 16 +++++++++-------
R/adjacencyMatrix_to_logicalRules.R |only
R/mcmc_ddepn.R | 11 ++++++++++-
R/plot_profiles.R | 10 ++++++++++
data/hcc1954.RData |binary
data/hcc1954raw.RData |binary
data/kegggraphs.RData |binary
inst/doc/ddepn.pdf |binary
man/adjacencyMatrix_to_logicalRules.Rd |only
10 files changed, 36 insertions(+), 13 deletions(-)
Title: Geographic analysis and modeling with raster data
Diff between raster versions 2.0-04 dated 2012-06-18 and 2.0-05 dated 2012-06-21
Description: Reading, writing, manipulating, analyzing and modeling of
gridded spatial data. The package implements basic and
high-level functions and processing of very large files is
supported.
Author: Robert J. Hijmans & Jacob van Etten
Maintainer: Robert J. Hijmans
ChangeLog | 6 -
DESCRIPTION | 8 +-
MD5 | 44 +++++++-------
R/as.data.frame.R | 148 +++++++++++++++++++++++++++++++++++++++++++++++-
R/cellValues.R | 4 -
R/coerce.R | 4 -
R/extractLines.R | 4 -
R/extractPoints.R | 4 -
R/extractPolygons.R | 4 -
R/factor.R | 33 +++++++---
R/mean.R | 120 ++++++++++++++++++++++++++++++--------
R/rasterFromGDAL.R | 27 +++++++-
R/rasterToPoints.R | 6 +
R/rasterizeLines.R | 6 -
R/rasterizePoints.R | 8 +-
R/rasterizePolygons.R | 80 ++++++++++++++-----------
R/ratify.R | 18 +++--
R/show.R | 54 +++++++----------
inst/doc/Raster.pdf |binary
inst/doc/functions.pdf |binary
inst/doc/rasterfile.pdf |binary
man/as.data.frame.Rd | 27 ++++++--
man/factor.Rd | 11 ++-
23 files changed, 443 insertions(+), 173 deletions(-)
Title: Network Generation and Comparison
Diff between NetComp versions 1.4 dated 2012-04-23 and 1.5 dated 2012-06-21
Description: This package contains functions to carry out analyse high
throughput data analysis and to conduct dataset comparisons.
Similarity matrices from high thoughput phenotypic data
containing uninformative (e.g. wildtype) or missing data can be
calculated to report similarity of response. A suite of graph
comparisons using an adjacency or correlation matrix format are
included to facilitate quick network analysis. Update removes
function 'shortPaths' as there is a suitable funtion in the
current version of 'igraph'.
Author: Shannon M. Bell
Maintainer: Shannon M. Bell
NetComp-1.4/NetComp/R/shortPaths.R |only
NetComp-1.4/NetComp/man/shortPaths.Rd |only
NetComp-1.5/NetComp/DESCRIPTION | 14 ++++++++------
NetComp-1.5/NetComp/MD5 | 6 ++----
NetComp-1.5/NetComp/NAMESPACE | 4 ++--
5 files changed, 12 insertions(+), 12 deletions(-)
Title: Compute statistics helper functions
Diff between dostats versions 1.1.20120309 dated 2012-03-13 and 1.2.0 dated 2012-06-21
Description: A small package containing helper utilities for creating
function for computing statistics.
Author: Andrew Redd
Maintainer: Andrew Redd
dostats-1.1.20120309/dostats/R/collect.R |only
dostats-1.1.20120309/dostats/R/widedf.R |only
dostats-1.1.20120309/dostats/man/collect.Rd |only
dostats-1.2.0/dostats/DESCRIPTION | 15 +-
dostats-1.2.0/dostats/MD5 | 57 ++++++----
dostats-1.2.0/dostats/NAMESPACE | 34 +++---
dostats-1.2.0/dostats/NEWS | 22 +++-
dostats-1.2.0/dostats/R/T.R | 26 +++++
dostats-1.2.0/dostats/R/compose.R | 32 +++++-
dostats-1.2.0/dostats/R/consecutive.R | 31 +++++
dostats-1.2.0/dostats/R/dostats.R | 27 +++++
dostats-1.2.0/dostats/R/onarg.R | 102 ++++++++++++-------
dostats-1.2.0/dostats/R/utils.R |only
dostats-1.2.0/dostats/R/wargs.R | 81 +++++++++++++++
dostats-1.2.0/dostats/dostats.Rproj |only
dostats-1.2.0/dostats/inst/examples |only
dostats-1.2.0/dostats/inst/tests/test_compose.R | 3
dostats-1.2.0/dostats/inst/tests/test_consecutive.R | 3
dostats-1.2.0/dostats/inst/tests/test_dostats.R | 3
dostats-1.2.0/dostats/inst/tests/test_make_new_id.R |only
dostats-1.2.0/dostats/inst/tests/test_onarg.R | 1
dostats-1.2.0/dostats/inst/tests/test_wargs.R | 3
dostats-1.2.0/dostats/man/T.Rd | 32 +++---
dostats-1.2.0/dostats/man/class.stats.Rd | 66 ++++++------
dostats-1.2.0/dostats/man/compose.Rd | 104 ++++++++++----------
dostats-1.2.0/dostats/man/contains.Rd | 54 +++++-----
dostats-1.2.0/dostats/man/dostats.Rd | 74 +++++++-------
dostats-1.2.0/dostats/man/fill_v.Rd |only
dostats-1.2.0/dostats/man/listrows.Rd |only
dostats-1.2.0/dostats/man/make_call.Rd |only
dostats-1.2.0/dostats/man/make_new_id.Rd |only
dostats-1.2.0/dostats/man/me.Rd |only
dostats-1.2.0/dostats/man/onarg.Rd | 60 +++++------
dostats-1.2.0/dostats/man/redirf.Rd |only
dostats-1.2.0/dostats/man/seq_consecutive.Rd | 39 +++----
dostats-1.2.0/dostats/man/wargs.Rd | 50 +++++----
36 files changed, 582 insertions(+), 337 deletions(-)
Title: Conversion of R regression output to LaTeX tables.
Diff between texreg versions 1.01 dated 2012-06-20 and 1.02 dated 2012-06-21
Description: texreg converts coefficients, standard errors,
significance stars, and goodness-of-fit statistics of
statistical models into LaTeX tables. Either a single model or
a list of models can be combined in a single table. The output
is customizable. lm, lme, gls, glm and ergm objects are
currently supported. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld
DESCRIPTION | 10 +--
MD5 | 12 ++--
R/texreg.R | 145 ++++++++++++++++++++++++++++++++++++++++++++++-----
inst/doc/texreg.Rnw | 44 +++++++++------
inst/doc/texreg.pdf |binary
man/texreg.Rd | 15 +++--
vignettes/texreg.Rnw | 44 +++++++++------
7 files changed, 207 insertions(+), 63 deletions(-)
Title: Centre of mass assessment and consolidation of trees.
Diff between treecm versions 1.0.2 dated 2011-05-31 and 1.1 dated 2012-06-21
Description: The centre of mass is a crucial data for arborists in
order to consolidate a tree using steel or dynamic cables.
Given field-recorded data on branchiness of a tree, the
package: (i) computes and plots the centre of mass of the tree
itself, (ii) computes branches slenderness coefficient in order
to aid the arborist identify potentially dangerous branches,
and (iii) computes the force acting on a ground plinth and its
best position relating to the tree centre of mass, should the
tree need to be stabilized by a steel cable
Author: Marco Bascietto
Maintainer: Marco Bascietto
treecm-1.0.2/treecm/CHANGELOG |only
treecm-1.0.2/treecm/README.md |only
treecm-1.0.2/treecm/data/fieldData.csv.gz |only
treecm-1.0.2/treecm/data/treeData.RData |only
treecm-1.0.2/treecm/inst/doc/treecm.Rnw |only
treecm-1.0.2/treecm/man/fieldData.Rd |only
treecm-1.0.2/treecm/man/plot.vectors.Rd |only
treecm-1.0.2/treecm/man/switchBranchPruningStatus.Rd |only
treecm-1.0.2/treecm/man/treeData.Rd |only
treecm-1.1/treecm/.gitignore |only
treecm-1.1/treecm/DESCRIPTION | 38 +-
treecm-1.1/treecm/MD5 |only
treecm-1.1/treecm/Makefile | 33 +-
treecm-1.1/treecm/NAMESPACE | 34 +-
treecm-1.1/treecm/NEWS |only
treecm-1.1/treecm/R/CM.R | 68 +++-
treecm-1.1/treecm/R/SC.R | 25 -
treecm-1.1/treecm/R/biomass.R | 69 +++--
treecm-1.1/treecm/R/math.R | 4
treecm-1.1/treecm/R/moment.R | 52 +--
treecm-1.1/treecm/R/stabilization.R |only
treecm-1.1/treecm/R/treecm.R | 261 +++++++++++++++----
treecm-1.1/treecm/R/vectors.R | 59 ----
treecm-1.1/treecm/data/Dst.RData |binary
treecm-1.1/treecm/data/stonePine1FieldData.csv.gz |only
treecm-1.1/treecm/data/stonePine1TreeData.RData |only
treecm-1.1/treecm/data/stonePine2FieldData.csv.gz |only
treecm-1.1/treecm/inst/doc/treecm.pdf |binary
treecm-1.1/treecm/man/Dst.Rd | 36 +-
treecm-1.1/treecm/man/allometryABDC.Rd |only
treecm-1.1/treecm/man/allometryAsca2011.Rd | 46 ++-
treecm-1.1/treecm/man/allometryCutini2009.Rd | 52 ++-
treecm-1.1/treecm/man/allometryPorte2002.Rd | 52 ++-
treecm-1.1/treecm/man/anchorRange.Rd |only
treecm-1.1/treecm/man/branchSR.Rd | 48 ++-
treecm-1.1/treecm/man/buildMomentObject.Rd |only
treecm-1.1/treecm/man/buildTreeMomentObject.Rd |only
treecm-1.1/treecm/man/calcMoment.Rd |only
treecm-1.1/treecm/man/centreOfMass.Rd | 24 +
treecm-1.1/treecm/man/centreOfMassAngle.Rd |only
treecm-1.1/treecm/man/centreOfMassModulus.Rd |only
treecm-1.1/treecm/man/getCoordinatesAndMoment.Rd | 105 +++++--
treecm-1.1/treecm/man/getMoment.Rd |only
treecm-1.1/treecm/man/getPlinthForce.Rd |only
treecm-1.1/treecm/man/importFieldData.Rd | 75 ++++-
treecm-1.1/treecm/man/logBiomass.Rd | 66 +++-
treecm-1.1/treecm/man/logPathSelection.Rd |only
treecm-1.1/treecm/man/plot.CM.Rd |only
treecm-1.1/treecm/man/plot.SR.Rd | 44 ++-
treecm-1.1/treecm/man/plot.vector.Rd |only
treecm-1.1/treecm/man/plotPolarSegment.Rd | 27 +
treecm-1.1/treecm/man/powerEquation.Rd | 34 +-
treecm-1.1/treecm/man/print.CM.Rd |only
treecm-1.1/treecm/man/pureQuadraticEquation.Rd | 33 +-
treecm-1.1/treecm/man/setBranchesCM.Rd | 24 +
treecm-1.1/treecm/man/stonePine1FieldData.Rd |only
treecm-1.1/treecm/man/stonePine1TreeData.Rd |only
treecm-1.1/treecm/man/stonePine2FieldData.Rd |only
treecm-1.1/treecm/man/summary.CM.Rd | 19 -
treecm-1.1/treecm/man/toCartesianXY.Rd | 37 +-
treecm-1.1/treecm/man/toCartesianXYZ.Rd |only
treecm-1.1/treecm/man/toPolar.Rd | 21 +
treecm-1.1/treecm/man/treeBiomass.Rd | 35 ++
treecm-1.1/treecm/man/treeSR.Rd | 39 +-
treecm-1.1/treecm/man/treeTotalBiomass.Rd |only
treecm-1.1/treecm/man/treeVectors.Rd | 25 +
treecm-1.1/treecm/man/treecm-package.Rd | 94 ++++--
treecm-1.1/treecm/vignettes |only
68 files changed, 1098 insertions(+), 481 deletions(-)
Title: Read binary files saved by Igor Pro (including Neuromatic data)
Diff between IgorR versions 0.5 dated 2012-01-25 and 0.5-2 dated 2012-06-21
Description: This package provides function to read data from the Igor
Pro data analysis program by Wavemetrics. The data formats
supported are Igor packed experiment format (pxp) and Igor
binary wave (ibw). See: http://www.wavemetrics.com/ for
details. It also includes some functions to load special pxp
files produced by the Neuromatic/Nclamp packages for recording
and analysing neuronal data. See
http://www.neuromatic.thinkrandom.com/ for details.
Author: Greg Jefferis
Maintainer: Greg Jefferis
DESCRIPTION | 8 +++---
MD5 | 20 ++++++++--------
NEWS | 10 ++++++++
R/ReadIgorBinary.R | 51 +++++++++++++++++++++++-------------------
R/ReadNclamp.R | 25 +++++++++++++-------
inst/tests/test-ibw.R | 4 +--
inst/tests/test-pxp.R | 15 ++++++++++--
man/ReadAllNclampLogTables.Rd | 17 +++++++++-----
man/SummariseSweepFile.Rd | 6 +---
man/WaveToTimeSeries.Rd | 6 ++++
man/read.pxp.Rd | 14 +++++++----
11 files changed, 111 insertions(+), 65 deletions(-)
Title: Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Diff between depmixS4 versions 1.1-1 dated 2012-03-16 and 1.2-0 dated 2012-06-21
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
Author: Ingmar Visser
Maintainer: Ingmar Visser
DESCRIPTION | 10 +--
MD5 | 54 +++++++++----------
NEWS | 6 ++
R/EM.R | 53 ++++++++++++++++--
R/depmix.R | 4 -
R/depmixfit.R | 2
R/em.control.R | 5 +
R/fb.R | 18 ++++--
R/logLik.R | 16 +++--
R/lystig.R | 5 +
R/nobs.R | 5 +
R/responseGLM.R | 12 +++-
R/responseGLMMULTINOM.R | 19 +++---
R/responseMVN.R | 4 +
R/responseNORM.R | 7 +-
R/transInit.R | 4 +
R/viterbi.R | 6 +-
README | 20 +++----
data/balance.rda |binary
data/speed.rda |binary
inst/doc/depmixS4.Rnw | 135 +++++++++++++++++++++++++++++++++++-------------
inst/doc/depmixS4.bib | 130 ++++++++++++++++++++++++----------------------
inst/doc/depmixS4.pdf |binary
man/depmix-methods.Rd | 20 +++----
man/depmix.Rd | 8 ++
man/depmixS4-package.Rd | 4 -
man/em.control.Rd | 35 ++++++++----
man/forwardbackward.Rd | 4 -
28 files changed, 378 insertions(+), 208 deletions(-)
Title: Various procedures used in psychometry
Diff between psy versions 1.0 dated 2009-12-24 and 1.1 dated 2012-06-21
Description: Kappa, ICC, Cronbach alpha, screeplot, mtmm
Author: Bruno Falissard
Maintainer: Bruno Falissard
DESCRIPTION | 8
MD5 |only
NAMESPACE |only
R/ckappa.R | 1
R/cronbach.R | 1
R/fpca.R | 1
R/icc.R | 1
R/lkappa.R | 1
R/mdspca.R | 1
R/mtmm.R | 492 ++++++++++++++++++++++++++++----------------------------
R/scree.plot.R | 1
R/sphpca.R | 1
R/wkappa.R | 1
data/ehd.rda |binary
data/expsy.rda |binary
data/sleep.rda |binary
man/ckappa.Rd | 13 -
man/cronbach.Rd | 13 -
man/icc.Rd | 11 -
man/lkappa.Rd | 11 -
man/mtmm.Rd | 15 +
man/wkappa.Rd | 11 -
22 files changed, 291 insertions(+), 292 deletions(-)
Title: Performs various spatial epidemiological analyses
Diff between SpatialEpi versions 0.1 dated 2010-01-18 and 1.0 dated 2012-06-21
Description: Cluster Detection, Disease Mapping
Author: Cici Chen
Maintainer: Albert Y. Kim
SpatialEpi-0.1/SpatialEpi/inst |only
SpatialEpi-1.0/SpatialEpi/DESCRIPTION | 16
SpatialEpi-1.0/SpatialEpi/MD5 | 41
SpatialEpi-1.0/SpatialEpi/NAMESPACE |only
SpatialEpi-1.0/SpatialEpi/R/MCMC.R |only
SpatialEpi-1.0/SpatialEpi/R/bayes.cluster.R |only
SpatialEpi-1.0/SpatialEpi/R/create.geo.objects.R |only
SpatialEpi-1.0/SpatialEpi/R/estimate.lambda.R |only
SpatialEpi-1.0/SpatialEpi/R/estimate.q.R |only
SpatialEpi-1.0/SpatialEpi/R/normalize.R |only
SpatialEpi-1.0/SpatialEpi/R/plotmap.R |only
SpatialEpi-1.0/SpatialEpi/R/process.MCMC.chain.R |only
SpatialEpi-1.0/SpatialEpi/data/.Rapp.history |only
SpatialEpi-1.0/SpatialEpi/data/NYleukemia.rda |only
SpatialEpi-1.0/SpatialEpi/man/MCMC.Rd |only
SpatialEpi-1.0/SpatialEpi/man/NYleukemia.Rd |only
SpatialEpi-1.0/SpatialEpi/man/SpatialEpi-package.Rd | 8
SpatialEpi-1.0/SpatialEpi/man/bayes.cluster.Rd |only
SpatialEpi-1.0/SpatialEpi/man/create.geo.objects.Rd |only
SpatialEpi-1.0/SpatialEpi/man/estimate.lambda.Rd |only
SpatialEpi-1.0/SpatialEpi/man/estimate.q.Rd |only
SpatialEpi-1.0/SpatialEpi/man/kulldorff.Rd | 2
SpatialEpi-1.0/SpatialEpi/man/normalize.Rd |only
SpatialEpi-1.0/SpatialEpi/man/pennLC.Rd | 2
SpatialEpi-1.0/SpatialEpi/man/plotmap.Rd |only
SpatialEpi-1.0/SpatialEpi/man/process.MCMC.chain.Rd |only
SpatialEpi-1.0/SpatialEpi/man/scotland.Rd | 6
SpatialEpi-1.0/SpatialEpi/src/Defn.h |only
SpatialEpi-1.0/SpatialEpi/src/Errormsg.h |only
SpatialEpi-1.0/SpatialEpi/src/Internal.h |only
SpatialEpi-1.0/SpatialEpi/src/Rstuff.h |only
SpatialEpi-1.0/SpatialEpi/src/SpatialEpi.c | 1858 ++++++++++++++------
SpatialEpi-1.0/SpatialEpi/src/SpatialEpi.h |only
SpatialEpi-1.0/SpatialEpi/src/cluster_detection.h |only
SpatialEpi-1.0/SpatialEpi/src/rejection.h |only
35 files changed, 1355 insertions(+), 578 deletions(-)
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Diff between monomvn versions 1.8-10 dated 2012-04-19 and 1.9 dated 2012-06-21
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage
regressions (plsr, pcr, lasso, ridge, etc.), where standard
regressions fail, the package can handle a nearly arbitrary
amount of missing data. The current version supports maximum
likelihood inference and a full Bayesian approach employing
scale-mixtures for the lasso (double-exponential) and
Normal-Gamma priors, and Student-t errors. Monotone data
augmentation extends this Bayesian approach to arbitrary
missingness patterns. A fully functional standalone interface
to the Bayesian lasso (from Park & Casella), Normal-Gamma (from
Griffin & Brown), and ridge regression with model selection via
Reversible Jump, and student-t errors (from Geweke) is also
provided
Author: Robert B. Gramacy
Maintainer: Robert B. Gramacy
ChangeLog | 7 ++
DESCRIPTION | 8 +-
MD5 | 22 +++---
man/blasso.Rd | 37 +++++++----
man/bmonomvn.Rd | 2
man/monomvn-internal.Rd | 1
src/linalg.c | 158 +++++++++++++++++++++++++++---------------------
src/linalg.h | 36 ++++++----
src/matrix.c | 73 ++++++++++++++++++++--
src/matrix.h | 5 +
src/rhelp.c | 3
src/rhelp.h | 9 ++
12 files changed, 239 insertions(+), 122 deletions(-)
Title: Fit joint model for event and censoring with cluster-level
frailties
Diff between jmec versions 1.0-3 dated 2012-06-02 and 1.0-4 dated 2012-06-21
Description: Fit joint model for event and censoring, with
cluster-level frailties, according to Huang & Wolfe (2002).
Author: Willem M. van der Wal
Maintainer: Willem M. van der Wal
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
src/jmec.cpp | 8 +++-----
3 files changed, 9 insertions(+), 11 deletions(-)
Title: Epidemiological tool for contact tracing.
Diff between EpiContactTrace versions 0.6.8 dated 2012-06-12 and 0.6.9 dated 2012-06-21
More information about EpiContactTrace at CRAN
Description: Routines for epidemiological contact tracing and
visualisation of network of contacts.
Author: Stefan Widgren
Maintainer: Stefan Widgren
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NAMESPACE | 2 +-
NEWS | 11 +++++++++++
R/plot.r | 2 +-
R/report.r | 3 +--
6 files changed, 24 insertions(+), 14 deletions(-)
Permanent link
Title: Algorithms for Quantitative Pedology
Diff between aqp versions 1.0 dated 2012-03-27 and 1.2-5 dated 2012-06-21
Description: A collection of algorithms related to modeling of soil
resources, soil classification, soil profile aggregation, and
visualization.
Author: Dylan Beaudette
Maintainer: Dylan Beaudette
aqp-1.0/aqp/man/soil.slot.Rd |only
aqp-1.2-5/aqp/DESCRIPTION | 22
aqp-1.2-5/aqp/MD5 | 78 -
aqp-1.2-5/aqp/NAMESPACE | 111 ++
aqp-1.2-5/aqp/NEWS | 31
aqp-1.2-5/aqp/R/SoilProfileCollection-slice-methods.R | 11
aqp-1.2-5/aqp/R/make.segments.R | 2
aqp-1.2-5/aqp/R/munsell2rgb.R | 13
aqp-1.2-5/aqp/R/panel.depth_function.R | 257 ++---
aqp-1.2-5/aqp/R/profile_compare.R | 772 +++++++++---------
aqp-1.2-5/aqp/R/profile_plot.R | 290 +++---
aqp-1.2-5/aqp/R/random_profile.R | 27
aqp-1.2-5/aqp/R/setters.R | 7
aqp-1.2-5/aqp/R/soil_slotting.R | 207 ++--
aqp-1.2-5/aqp/R/unroll.R | 16
aqp-1.2-5/aqp/TODO | 5
aqp-1.2-5/aqp/data/ca630.rda |binary
aqp-1.2-5/aqp/data/munsell.rda |binary
aqp-1.2-5/aqp/data/rruff.sample.rda |binary
aqp-1.2-5/aqp/data/sp1.rda |binary
aqp-1.2-5/aqp/data/sp2.rda |binary
aqp-1.2-5/aqp/data/sp3.rda |binary
aqp-1.2-5/aqp/data/sp4.rda |binary
aqp-1.2-5/aqp/data/sp5.rda |binary
aqp-1.2-5/aqp/demo/aqp.R | 28
aqp-1.2-5/aqp/man/SPC-plotting.Rd | 16
aqp-1.2-5/aqp/man/SPC-slab-methods.Rd | 189 ++++
aqp-1.2-5/aqp/man/SPC-slice-methods.Rd | 66 +
aqp-1.2-5/aqp/man/SPC-utils.Rd | 195 ++--
aqp-1.2-5/aqp/man/SoilProfileCollection-class.Rd | 2
aqp-1.2-5/aqp/man/ca630.Rd | 10
aqp-1.2-5/aqp/man/hzDistinctnessCodeToOffset.Rd |only
aqp-1.2-5/aqp/man/munsell2rgb.Rd | 5
aqp-1.2-5/aqp/man/panel.depth_function.Rd | 21
aqp-1.2-5/aqp/man/profileApply-methods.Rd | 4
aqp-1.2-5/aqp/man/profile_compare-methods.Rd | 146 ++-
aqp-1.2-5/aqp/man/random_profile.Rd | 19
aqp-1.2-5/aqp/man/sp1.Rd | 15
aqp-1.2-5/aqp/man/sp3.Rd | 3
aqp-1.2-5/aqp/man/sp4.Rd | 11
aqp-1.2-5/aqp/man/unroll.Rd | 82 -
41 files changed, 1567 insertions(+), 1094 deletions(-)