Tue, 03 Jul 2012

Package wavelets updated to version 0.2-7 with previous version 0.2-6 dated 2010-04-22

Title: A package of funtions for computing wavelet filters, wavelet transforms and multiresolution analyses
Description: This package contains functions for computing and plotting discrete wavelet transforms (DWT) and maximal overlap discrete wavelet transforms (MODWT), as well as their inverses. Additionally, it contains functionality for computing and plotting wavelet transform filters that are used in the above decompositions as well as multiresolution analyses.
Author: Eric Aldrich
Maintainer: Eric Aldrich

Diff between wavelets versions 0.2-6 dated 2010-04-22 and 0.2-7 dated 2012-07-03

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 8 files changed, 6 insertions(+), 5 deletions(-)

More information about wavelets at CRAN
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Package ProgGUIinR updated to version 0.0-2 with previous version 0.0-1 dated 2012-06-12

Title: support package for "Programming Graphical User Interfaces in R"
Description: sample code, appendices and functions for the text Programming GUIs in R
Author: Michael Lawrence and John Verzani
Maintainer: John Verzani

Diff between ProgGUIinR versions 0.0-1 dated 2012-06-12 and 0.0-2 dated 2012-07-03

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 12 files changed, 50 insertions(+), 563 deletions(-)

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Package glmnet updated to version 1.8 with previous version 1.7.4 dated 2012-04-27

Title: Lasso and elastic-net regularized generalized linear models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, poisson regression and the Cox model. Two recent additions are the multiresponse gaussian, and the grouped multinomial. The algorithm uses cyclical coordinate descent in a pathwise fashion, as described in the paper listed below.
Author: Jerome Friedman, Trevor Hastie, Rob Tibshirani
Maintainer: Trevor Hastie

Diff between glmnet versions 1.7.4 dated 2012-04-27 and 1.8 dated 2012-07-03

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Package copula updated to version 0.99-4 with previous version 0.99-2 dated 2012-05-30

Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used copulas including elliptical (normal and t), Archimedean (Clayton, Gumbel, Frank, and Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss, Galambos, Tawn, and t-EV), and other families (Plackett and Farlie-Gumbel-Morgenstern). Methods for density, distribution, random number generation, bivariate dependence measures, perspective and contour plots. Functions for fitting copula models with variance estimate. Independence tests among random variables and random vectors. Serial independence tests for univariate and multivariate continuous time series. Goodness-of-fit tests for copulas based on multipliers, the parametric bootstrap with several transformation options. Bivariate and multivariate tests of extreme-value dependence. Bivariate tests of exchangeability. Now with former 'nacopula' for working with nested Archimedean copulas. Specifically, providing procedures for computing function values and cube volumes, characteristics such as Kendall's tau and tail dependence coefficients, efficient sampling algorithms, various estimators, and goodness-of-fit tests. The package also contains related univariate distributions and special functions such as the Sibuya distribution, the polylogarithm, Stirling and Eulerian numbers.
Author: Jun Yan and Ivan Kojadinovic , Marius Hofert and Martin Maechler
Maintainer: Martin Maechler

Diff between copula versions 0.99-2 dated 2012-05-30 and 0.99-4 dated 2012-07-03

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Package miRtest updated to version 1.4 with previous version 1.3 dated 2012-07-02

Title: combined miRNA- and mRNA-testing
Description: combined miRNA- and mRNA-testing
Author: Stephan Artmann, Klaus Jung, Tim Beissbarth
Maintainer: Stephan Artmann

Diff between miRtest versions 1.3 dated 2012-07-02 and 1.4 dated 2012-07-03

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 6 files changed, 137 insertions(+), 137 deletions(-)

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Package lossDev updated to version 3.0.0-3 with previous version 3.0.0-1 dated 2011-08-06

Title: Robust Loss Development Using MCMC
Description: Loss Development for Insurance Triangles
Author: Christopher W. Laws, Frank A. Schmid
Maintainer: Christopher W. Laws

Diff between lossDev versions 3.0.0-1 dated 2011-08-06 and 3.0.0-3 dated 2012-07-03

 lossDev-3.0.0-1/lossDev/man/AnnualAggLossDevModelInput-class.Rd                                                        |only
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 lossDev-3.0.0-1/lossDev/man/get.color.Rd                                                                               |only
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 lossDev-3.0.0-1/lossDev/tests/Standard.R                                                                               |only
 lossDev-3.0.0-3/lossDev/DESCRIPTION                                                                                    |   19 
 lossDev-3.0.0-3/lossDev/MD5                                                                                            |  348 +++---
 lossDev-3.0.0-3/lossDev/NAMESPACE                                                                                      |   95 -
 lossDev-3.0.0-3/lossDev/R/AnnualAggLossDevModelInput.R                                                                 |    2 
 lossDev-3.0.0-3/lossDev/R/AnnualAggLossDevModelOutput.R                                                                |    2 
 lossDev-3.0.0-3/lossDev/R/AnnualAggLossDevModelOutputWithZeros.R                                                       |    2 
 lossDev-3.0.0-3/lossDev/R/BreakAnnualAggLossDevModelInput.R                                                            |    2 
 lossDev-3.0.0-3/lossDev/R/BreakAnnualAggLossDevModelOutput.R                                                           |    2 
 lossDev-3.0.0-3/lossDev/R/DocumentationOfData.R                                                                        |    2 
 lossDev-3.0.0-3/lossDev/R/LossDevModelInput.R                                                                          |    2 
 lossDev-3.0.0-3/lossDev/R/LossDevModelOutput.R                                                                         |    2 
 lossDev-3.0.0-3/lossDev/R/NodeOutput.R                                                                                 |   48 
 lossDev-3.0.0-3/lossDev/R/StandardAnnualAggLossDevModelInput.R                                                         |    2 
 lossDev-3.0.0-3/lossDev/R/StandardAnnualAggLossDevModelOutput.R                                                        |    2 
 lossDev-3.0.0-3/lossDev/R/lossDev.R                                                                                    |    2 
 lossDev-3.0.0-3/lossDev/R/util.R                                                                                       |    2 
 lossDev-3.0.0-3/lossDev/R/zzz.R                                                                                        |   34 
 lossDev-3.0.0-3/lossDev/inst/doc/lossDev.Rnw                                                                           |    1 
 lossDev-3.0.0-3/lossDev/inst/doc/lossDev.pdf                                                                           |binary
 lossDev-3.0.0-3/lossDev/inst/models/break.model.txt                                                                    |    2 
 lossDev-3.0.0-3/lossDev/inst/models/probOfPayment.model.txt                                                            |    2 
 lossDev-3.0.0-3/lossDev/inst/models/standard.model.txt                                                                 |    2 
 lossDev-3.0.0-3/lossDev/m4/Makefile.am                                                                                 |    2 
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 lossDev-3.0.0-3/lossDev/man/CPI.Rd                                                                                     |   28 
 lossDev-3.0.0-3/lossDev/man/CumulativeAutoBodilyInjuryTriangle.Rd                                                      |   20 
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 lossDev-3.0.0-3/lossDev/man/MCPI.Rd                                                                                    |   28 
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 lossDev-3.0.0-3/lossDev/man/QQPlot.Rd                                                                                  |   20 
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 lossDev-3.0.0-3/lossDev/man/accountForZeroPayments.Rd                                                                  |   28 
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 lossDev-3.0.0-3/lossDev/man/autoregressiveParameter.Rd                                                                 |   24 
 lossDev-3.0.0-3/lossDev/man/calculateProbOfPayment.Rd                                                                  |   14 
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 lossDev-3.0.0-3/lossDev/man/calendarYearEffect.Rd                                                                      |   36 
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 lossDev-3.0.0-3/lossDev/man/cumulate.Rd                                                                                |   14 
 lossDev-3.0.0-3/lossDev/man/decumulate.Rd                                                                              |   14 
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 lossDev-3.0.0-3/lossDev/man/degreesOfFreedom.Rd                                                                        |   22 
 lossDev-3.0.0-3/lossDev/man/dot-dash-onLoad-dash-lossDev.Rd                                                            |only
 lossDev-3.0.0-3/lossDev/man/estimate-dot-priors.Rd                                                                     |only
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 lossDev-3.0.0-3/lossDev/man/exposureGrowth.Rd                                                                          |   18 
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 lossDev-3.0.0-3/lossDev/man/exposureGrowthAutoregressiveParameter.Rd                                                   |   18 
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 lossDev-3.0.0-3/lossDev/man/exposureGrowthTracePlot.Rd                                                                 |   18 
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 lossDev-3.0.0-3/lossDev/man/finalCumulativeDiff.Rd                                                                     |   18 
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 lossDev-3.0.0-3/lossDev/man/firstYearInNewRegime.Rd                                                                    |   24 
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 lossDev-3.0.0-3/lossDev/man/firstYearInNewRegimeTracePlot.Rd                                                           |   16 
 lossDev-3.0.0-3/lossDev/man/get-dot-color.Rd                                                                           |only
 lossDev-3.0.0-3/lossDev/man/getExposureYearLabel.Rd                                                                    |   14 
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 lossDev-3.0.0-3/lossDev/man/getJagsData.Rd                                                                             |   16 
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 lossDev-3.0.0-3/lossDev/man/getJagsInits.Rd                                                                            |   16 
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 lossDev-3.0.0-3/lossDev/man/getModelOutputNodes.Rd                                                                     |   16 
 lossDev-3.0.0-3/lossDev/man/getNonMissingIndexes.Rd                                                                    |   16 
 lossDev-3.0.0-3/lossDev/man/getPaymentNoPaymentMatrix.Rd                                                               |   16 
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 lossDev-3.0.0-3/lossDev/man/getTriDim.Rd                                                                               |   14 
 lossDev-3.0.0-3/lossDev/man/gompertz.Rd                                                                                |   24 
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 lossDev-3.0.0-3/lossDev/man/gompertzParameters.Rd                                                                      |   32 
 lossDev-3.0.0-3/lossDev/man/lossDev.Rd                                                                                 |   20 
 lossDev-3.0.0-3/lossDev/man/lossDevOptions.Rd                                                                          |   41 
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 lossDev-3.0.0-3/lossDev/man/lossDevelopmentFactors.Rd                                                                  |   32 
 lossDev-3.0.0-3/lossDev/man/makeBreakAnnualInput.Rd                                                                    |  176 +--
 lossDev-3.0.0-3/lossDev/man/makeStandardAnnualInput.Rd                                                                 |  570 +++++-----
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 lossDev-3.0.0-3/lossDev/man/mcmcACF.Rd                                                                                 |   18 
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 lossDev-3.0.0-3/lossDev/man/meanExposureGrowth.Rd                                                                      |   20 
 lossDev-3.0.0-3/lossDev/man/mutableState.Rd                                                                            |   10 
 lossDev-3.0.0-3/lossDev/man/myLibPath.Rd                                                                               |   12 
 lossDev-3.0.0-3/lossDev/man/myPkgName.Rd                                                                               |   12 
 lossDev-3.0.0-3/lossDev/man/newNodeOutput.Rd                                                                           |   18 
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 lossDev-3.0.0-3/lossDev/man/numberOfKnots.Rd                                                                           |   24 
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 lossDev-3.0.0-3/lossDev/man/predictedPayments.Rd                                                                       |   40 
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 lossDev-3.0.0-3/lossDev/man/probablityOfPayment.Rd                                                                     |   22 
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 lossDev-3.0.0-3/lossDev/man/rateOfDecay.Rd                                                                             |   26 
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 lossDev-3.0.0-3/lossDev/man/rateOfDecayTracePlot.Rd                                                                    |   20 
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 lossDev-3.0.0-3/lossDev/man/runLossDevModel.Rd                                                                         |   16 
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 lossDev-3.0.0-3/lossDev/man/scaleParameter.Rd                                                                          |   22 
 lossDev-3.0.0-3/lossDev/man/setGenericVerif.Rd                                                                         |   24 
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 lossDev-3.0.0-3/lossDev/man/skewnessParameter.Rd                                                                       |   24 
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 lossDev-3.0.0-3/lossDev/man/standardDeviationForScaleInnovation.Rd                                                     |   24 
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 lossDev-3.0.0-3/lossDev/man/standardDeviationOfCalendarYearEffect.Rd                                                   |   24 
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 lossDev-3.0.0-3/lossDev/man/standardDeviationOfExposureGrowth.Rd                                                       |   18 
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 lossDev-3.0.0-3/lossDev/man/standardDeviationVsDevelopmentTime.Rd                                                      |   20 
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 lossDev-3.0.0-3/lossDev/man/stochasticInflation.Rd                                                                     |   32 
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 lossDev-3.0.0-3/lossDev/man/stochasticInflationRhoParameter.Rd                                                         |   28 
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 lossDev-3.0.0-3/lossDev/man/stochasticInflationStationaryMean.Rd                                                       |   28 
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 lossDev-3.0.0-3/lossDev/man/tailFactor.Rd                                                                              |   60 -
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 lossDev-3.0.0-3/lossDev/man/triResi.Rd                                                                                 |   22 
 lossDev-3.0.0-3/lossDev/src/Makevars                                                                                   |    6 
 lossDev-3.0.0-3/lossDev/src/Makevars.in                                                                                |    2 
 lossDev-3.0.0-3/lossDev/src/Makevars.win                                                                               |    2 
 lossDev-3.0.0-3/lossDev/src/RJump.cpp                                                                                  |    2 
 lossDev-3.0.0-3/lossDev/src/RJump.h                                                                                    |    2 
 lossDev-3.0.0-3/lossDev/src/distributions/DSpline.cpp                                                                  |    2 
 lossDev-3.0.0-3/lossDev/src/distributions/DSpline.h                                                                    |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/ExpandableArray.cpp                                                               |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/ExpandableArray.h                                                                 |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/Knots.cpp                                                                         |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/Knots.h                                                                           |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSpline.cpp                                                                   |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSpline.h                                                                     |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSplineFactory.cpp                                                            |    2 
 lossDev-3.0.0-3/lossDev/src/samplers/RJumpSplineFactory.h                                                              |    2 
 lossDev-3.0.0-3/lossDev/tests/TestFor-rjags.R                                                                          |only
 251 files changed, 1318 insertions(+), 1372 deletions(-)

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New package GISTools with initial version 0.7-1
Package: GISTools
Title: Some further GIS capabilities for R
Version: 0.7-1
Date: 2012-07-03
Author: Chris Brunsdon and Hongyan Chen
Maintainer: Chris Brunsdon
Description: Some mapping and spatial data manipulation tools - in particular drawing choropleth maps with nice looking legends, and aggregation of point data to polygons.
Depends: R (>= 2.15.0), maptools, RColorBrewer, MASS, rgeos
License: GPL (>= 2)
Packaged: 2012-07-03 16:19:49 UTC; root
Repository: CRAN
Date/Publication: 2012-07-03 16:55:53

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Package RcppBDT updated to version 0.2.0 with previous version 0.1.0 dated 2011-01-18

Title: Rcpp bindings for the Boost Date_Time library
Description: This package provides R with access to Boost Date_Time functionality by using Rcpp modules. Currently only Date functionality is covered. Boost header files are needed to build the package. Linking is optional to provide supplementary date to/from strings conversion functions.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel

Diff between RcppBDT versions 0.1.0 dated 2011-01-18 and 0.2.0 dated 2012-07-03

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 12 files changed, 105 insertions(+), 65 deletions(-)

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Package pomp updated to version 0.43-1 with previous version 0.42-4 dated 2012-05-15

Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Author: Aaron A. King, Edward L. Ionides, Carles Breto, Steve Ellner, Bruce Kendall, Helen Wearing, Matthew J. Ferrari, Michael Lavine, Daniel C. Reuman
Maintainer: Aaron A. King

Diff between pomp versions 0.42-4 dated 2012-05-15 and 0.43-1 dated 2012-07-03

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 32 files changed, 496 insertions(+), 177 deletions(-)

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Package phcfM updated to version 1.1 with previous version 1.0 dated 2012-06-05

Title: Modelling anthropogenic deforestation
Description: phcfM is an R package for modelling anthropogenic deforestation. It was initially developed to obtain REDD baseline scenarios of deforestation for the "programme holistique de conservation des forets a Madagascar" (from which the package is named after). Parameter inference is done in a hierarchical Bayesian framework. Markov chains Monte Carlo (MCMC) are coded in C++ using the Scythe statistical library to maximize computation efficiency.
Author: Ghislain Vieilledent
Maintainer: Ghislain Vieilledent

Diff between phcfM versions 1.0 dated 2012-06-05 and 1.1 dated 2012-07-03

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 24 files changed, 996 insertions(+), 375 deletions(-)

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New package NPHMC with initial version 1.0
Package: NPHMC
Type: Package
Title: Sample Size Calculation for the Proportional Hazards Cure Model
Version: 1.0
Date: 2012-06-30
Author: Chao Cai, Songfeng Wang, Wenbin Lu, Jiajia Zhang
Maintainer: Chao Cai
Description: An R-package for calculating sample size based on Proportional Hazard Mixture Cure (PHMC) Model
Depends: survival, smcure
License: GPL-2
LazyLoad: yes
Packaged: 2012-07-02 17:30:39 UTC; TangUSC
Repository: CRAN
Date/Publication: 2012-07-03 13:12:54

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Package HSROC updated to version 2.1.0 with previous version 2.0.5 dated 2012-03-26

Title: Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
Description: This package implements a model for joint meta-analysis of sensitivity and specificity of the diagnostic test under evaluation, while taking into account the possibly imperfect sensitivity and specificity of the reference test. This hierarchical model accounts for both within and between study variability. Estimation is carried out using a Bayesian approach, implemented via a Gibbs sampler. The model can be applied in situations where more than one reference test is used in the selected studies.
Author: Ian Schiller and Nandini Dendukuri
Maintainer:

Diff between HSROC versions 2.0.5 dated 2012-03-26 and 2.1.0 dated 2012-07-03

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Package CDVine updated to version 1.1-9 with previous version 1.1-8 dated 2012-07-02

Title: Statistical inference of C- and D-vine copulas
Description: This package provides functions for statistical inference of canonical vine (C-vine) and D-vine copulas. It contains tools for bivariate exploratory data analysis and for bivariate as well as vine copula selection. Models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are also included. Data is assumed to lie in the unit hypercube (so-called copula data).
Author: Ulf Schepsmeier, Eike Christian Brechmann
Maintainer: Ulf Schepsmeier

Diff between CDVine versions 1.1-8 dated 2012-07-02 and 1.1-9 dated 2012-07-03

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 DESCRIPTION                 |   12 ++++++------
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 8 files changed, 27 insertions(+), 24 deletions(-)

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New package anm with initial version 1.1-1
Package: anm
Version: 1.1-1
Date: July 3 2012
Title: Analog model for downscaling
Author: Alexandra Imbert & Rasmus E. Benestad
Maintainer: Rasmus E. Benestad
Depends: R (>= 1.4), clim.pact, survival
Description: The package contains an analog model for statistical/empirical downscaling.
License: GPL (>= 2)
URL: http://www.r-project.org http://cran.r-project.org, http://www.stats.bris.ac.uk/~masgc/, http://www.met.rdg.ac.uk/cag/
ZipData: no
Packaged: 2012-07-03 12:04:36 UTC; rasmusb
X-CRAN-Comment: This package has been archived: it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders
Repository: CRAN
Date/Publication: 2012-07-03 13:28:43

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Package magic updated to version 1.5-2 with previous version 1.5-1 dated 2011-12-27

Title: create and investigate magic squares
Description: a collection of efficient, vectorized algorithms for the creation and investigation of magic squares and hypercubes, including a variety of functions for the manipulation and analysis of arbitrarily dimensioned arrays. The package includes methods for creating normal magic squares of any order greater than 2. The ultimate intention is for the package to be a computerized embodiment all magic square knowledge, including direct numerical verification of properties of magic squares (such as recent results on the determinant of odd-ordered semimagic squares). Some antimagic functionality is included. The package also serves as a rebuttal to the often-heard comment "I thought R was just for statistics".
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin

Diff between magic versions 1.5-1 dated 2011-12-27 and 1.5-2 dated 2012-07-03

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 11 files changed, 31 insertions(+), 27 deletions(-)

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Package hydroGOF updated to version 0.3-4 with previous version 0.3-3 dated 2012-05-02

Title: Goodness-of-fit functions for comparison of simulated and observed hydrological time series
Description: S3 functions implementing both statistical and graphical goodness-of-fit measures between observed and simulated values, mainly oriented to be used during the calibration, validation, and application of hydrological models. Missing values in observed and/or simulated values can be removed before computations. Comments / questions / collaboration of any kind are very welcomed.
Author: Mauricio Zambrano-Bigiarini [aut, cre]
Maintainer: Mauricio Zambrano Bigiarini

Diff between hydroGOF versions 0.3-3 dated 2012-05-02 and 0.3-4 dated 2012-07-03

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New package RcppOctave with initial version 0.8.5
Package: RcppOctave
Type: Package
Title: Seamless Interface to Octave -- and Matlab
Version: 0.8.5
Date: 2011-06-07
Author: Renaud Gaujoux
Maintainer: Renaud Gaujoux
Description: Direct interface to Octave. The primary goal is to facilitate the port of Matlab/Octave scripts to R. The package enables to call any Octave functions from R and as well as browsing their documentation, passing variables between R and Octave, using R core RNGs in Octave, which ensure stochastic computations are also reproducible.
License: GPL (>= 2)
URL: http://r-forge.r-project.org/projects/rcppoctave/
LazyLoad: yes
SystemRequirements: Octave (>= 3.2.4) and its development files
OS_type: unix
Depends: methods, digest, stringr, Rcpp (>= 0.9.4), pkgmaker (>= 0.6.4)
Imports: utils
Suggests: RUnit, devtools, knitr, bibtex
LinkingTo: Rcpp
Collate: 'devutils.R' 'utils.R' 'package.R' 'interface.R' 'Octave-class.R' 'OctaveFunction-class.R' 'base-functions.R' 'eval.R' 'random.R'
Repository: CRAN
Repository/R-Forge/Project: rcppoctave
Repository/R-Forge/Revision: 50
Packaged: 2012-06-25 18:19:36 UTC; rforge
Date/Publication: 2012-07-03 08:44:25

More information about RcppOctave at CRAN
Permanent link

Package complex.surv.dat.sim updated to version 1.1 with previous version 1.0 dated 2012-06-06

Title: Simulation of complex survival data
Description: Simulation of complex survival data
Author: David Mori˝a, Centre Tecnol˛gic de Nutriciˇ i Salut and Albert Navarro, Universitat Aut˛noma de Barcelona
Maintainer: David Mori˝a

Diff between complex.surv.dat.sim versions 1.0 dated 2012-06-06 and 1.1 dated 2012-07-03

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Package survey updated to version 3.28-2 with previous version 3.28-1 dated 2012-05-24

Title: analysis of complex survey samples
Description: Summary statistics, two-sample tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase subsampling designs. Graphics. Predictive margins by direct standardization. PPS sampling without replacement. Principal components, factor analysis.
Author: Thomas Lumley
Maintainer: Thomas Lumley

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More information about survey at CRAN
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Package R.huge updated to version 0.4.1 with previous version 0.3.0 dated 2011-07-24

Title: Methods for accessing huge amounts of data [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building new projects based on it. Cross-platform alternatives are the following packages: bigmemory (CRAN), ff (CRAN), BufferedMatrix (BioConductor). The main usage of it was inside the aroma.affymetrix package. (The package currently provides a class representing a matrix where the actual data is stored in a binary format on the local file system. This way the size limit of the data is set by the file system and not the memory.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson

Diff between R.huge versions 0.3.0 dated 2011-07-24 and 0.4.1 dated 2012-07-03

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Package myepisodes updated to version 1.1.1 with previous version 1.0.0 dated 2012-02-18

Title: MyEpisodes RSS/API functions
Description: Useful functions for accessing MyEpisodes feeds and episode information as well as other tv episode related actions through www.myepisodes.com
Author: Matt Malin
Maintainer: Matt Malin

Diff between myepisodes versions 1.0.0 dated 2012-02-18 and 1.1.1 dated 2012-07-03

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Package mcmc updated to version 0.9 with previous version 0.8 dated 2010-06-23

Title: Markov Chain Monte Carlo
Description: functions for Markov chain Monte Carlo (MCMC).
Author: Charles J. Geyer and Leif T. Johnson
Maintainer: Charles J. Geyer

Diff between mcmc versions 0.8 dated 2010-06-23 and 0.9 dated 2012-07-03

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Package matrixStats updated to version 0.5.2 with previous version 0.5.0 dated 2012-05-06

Title: Methods that apply to rows and columns of a matrix
Description: This packages provides methods operating on rows and columns of matrices. The objective is to have all methods being optimized for speed and memory consumption.
Author: Henrik Bengtsson, Hector Corrada Bravo, Robert Gentleman, Harris Jaffee
Maintainer: Henrik Bengtsson

Diff between matrixStats versions 0.5.0 dated 2012-05-06 and 0.5.2 dated 2012-07-03

 DESCRIPTION                |   14 ++----
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Package JM updated to version 1.0-0 with previous version 0.9-3 dated 2012-03-21

Title: Joint Modeling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos

Diff between JM versions 0.9-3 dated 2012-03-21 and 1.0-0 dated 2012-07-03

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Package fda.usc updated to version 0.9.8.1 with previous version 0.9.8 dated 2012-06-07

Title: Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
Description: This package implements functional data methods.
Author: Febrero-Bande, M. and Oviedo de la Fuente, M.
Maintainer: Oviedo de la Fuente, M.

Diff between fda.usc versions 0.9.8 dated 2012-06-07 and 0.9.8.1 dated 2012-07-03

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Package aroma.apd updated to version 0.2.3 with previous version 0.2.2 dated 2012-04-04

Title: A probe-level data file format used by aroma.affymetrix [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. (The (in-house) APD file format was initially developed to store Affymetrix probe-level data, e.g. normalized CEL intensites. Chip types can be added to APD file and similar to methods in the affxparser package, this package provides methods to read APDs organized by units (probesets). In addition, the probe elements can be arranged optimally such that the elements are guaranteed to be read in order when, for instance, data is read unit by unit. This speeds up the read substantially. This package is supporting the Aroma framework and should not be used elsewhere.)
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson

Diff between aroma.apd versions 0.2.2 dated 2012-04-04 and 0.2.3 dated 2012-07-03

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Package anametrix updated to version 1.3 with previous version 0.2 dated 2012-06-07

Title: Connects to Anametrix
Description: Bidirectional connector to Anametrix API.
Author: Roman Jugai
Maintainer: Roman Jugai

Diff between anametrix versions 0.2 dated 2012-06-07 and 1.3 dated 2012-07-03

 DESCRIPTION              |   11 -
 MD5                      |   10 
 R/getAxDataset.R         |  514 +++++++++++++++++++++++------------------------
 R/uploadData.R           |only
 man/anametrix-package.Rd |   14 -
 man/getAxDataset.Rd      |   13 +
 man/uploadData.Rd        |only
 7 files changed, 283 insertions(+), 279 deletions(-)

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