Title: Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities
Diff between mosaic versions 0.4-1 dated 2012-03-27 and 0.5-1 dated 2012-07-05
Description: Data sets and utilities from Project MOSAIC
(mosaic-web.org) used to teach mathematics, statistics,
computation and modeling. Funded by the NSF, Project MOSAIC is
a community of educators working to tie together aspects of
quantitative work that students in science, technology,
engineering and mathematics will need in their professional
lives, but which are usually taught in isolation, if at all.
Author: Randall Pruim
Maintainer: Randall Pruim
mosaic-0.4-1/mosaic/R/nlsModel.R |only
mosaic-0.4-1/mosaic/data/CPS.rda |only
mosaic-0.4-1/mosaic/man/CPS.Rd |only
mosaic-0.4-1/mosaic/man/nlsModel.Rd |only
mosaic-0.4-1/mosaic/man/tally.Rd |only
mosaic-0.5-1/mosaic/DESCRIPTION | 20 -
mosaic-0.5-1/mosaic/MD5 | 266 +++++++++-----
mosaic-0.5-1/mosaic/NAMESPACE | 31 +
mosaic-0.5-1/mosaic/R/CIsim.R | 2
mosaic-0.5-1/mosaic/R/Calculus.R | 66 +--
mosaic-0.5-1/mosaic/R/aggregating.R | 320 +++++-------------
mosaic-0.5-1/mosaic/R/binom.test.R | 20 +
mosaic-0.5-1/mosaic/R/datasets.R | 38 +-
mosaic-0.5-1/mosaic/R/datasetsOLI.R |only
mosaic-0.5-1/mosaic/R/do.R | 12
mosaic-0.5-1/mosaic/R/expandFun.R |only
mosaic-0.5-1/mosaic/R/favstats.R | 10
mosaic-0.5-1/mosaic/R/fetchData.R | 6
mosaic-0.5-1/mosaic/R/findZeros.R | 59 ++-
mosaic-0.5-1/mosaic/R/findZerosMult.R |only
mosaic-0.5-1/mosaic/R/fitModel.R |only
mosaic-0.5-1/mosaic/R/fitSpline.R |only
mosaic-0.5-1/mosaic/R/interval.R | 50 +-
mosaic-0.5-1/mosaic/R/linear-algebra.R | 126 -------
mosaic-0.5-1/mosaic/R/makeFun.R | 123 ++++++
mosaic-0.5-1/mosaic/R/mm.R |only
mosaic-0.5-1/mosaic/R/plotFun.R | 112 ++++--
mosaic-0.5-1/mosaic/R/plotPoints.R |only
mosaic-0.5-1/mosaic/R/project.R |only
mosaic-0.5-1/mosaic/R/prop.test.R | 20 +
mosaic-0.5-1/mosaic/R/read.file.R | 2
mosaic-0.5-1/mosaic/R/resample.R | 4
mosaic-0.5-1/mosaic/R/rgeo.R | 12
mosaic-0.5-1/mosaic/R/settings.R | 4
mosaic-0.5-1/mosaic/R/smoothers.R | 6
mosaic-0.5-1/mosaic/R/tally.R | 57 +--
mosaic-0.5-1/mosaic/R/xchisq.test.R | 2
mosaic-0.5-1/mosaic/R/xhistogram.R | 2
mosaic-0.5-1/mosaic/R/xpnorm.R | 4
mosaic-0.5-1/mosaic/data/Actors.rda |only
mosaic-0.5-1/mosaic/data/Animals.rda |only
mosaic-0.5-1/mosaic/data/Autopremiums.rda |only
mosaic-0.5-1/mosaic/data/Baby.rda |only
mosaic-0.5-1/mosaic/data/Births78.rda |binary
mosaic-0.5-1/mosaic/data/Birthweight.rda |only
mosaic-0.5-1/mosaic/data/Bodyimage.rda |only
mosaic-0.5-1/mosaic/data/CPS85.rda |only
mosaic-0.5-1/mosaic/data/Cards.rda |binary
mosaic-0.5-1/mosaic/data/Cellphones.rda |only
mosaic-0.5-1/mosaic/data/Computers.rda |only
mosaic-0.5-1/mosaic/data/CoolingWater.rda |only
mosaic-0.5-1/mosaic/data/Depression.rda |only
mosaic-0.5-1/mosaic/data/Drinking.rda |only
mosaic-0.5-1/mosaic/data/Drinks.rda |only
mosaic-0.5-1/mosaic/data/EPA.rda |only
mosaic-0.5-1/mosaic/data/Flicker.rda |only
mosaic-0.5-1/mosaic/data/Friends.rda |only
mosaic-0.5-1/mosaic/data/Galton.rda |binary
mosaic-0.5-1/mosaic/data/Gestation.rda |binary
mosaic-0.5-1/mosaic/data/Gradebook.rda |only
mosaic-0.5-1/mosaic/data/Graduation.rda |only
mosaic-0.5-1/mosaic/data/Guns.rda |only
mosaic-0.5-1/mosaic/data/HELP.rda |binary
mosaic-0.5-1/mosaic/data/HELPfull.rda |binary
mosaic-0.5-1/mosaic/data/HELPmiss.rda |binary
mosaic-0.5-1/mosaic/data/HELPrct.rda |binary
mosaic-0.5-1/mosaic/data/Heightweight.rda |only
mosaic-0.5-1/mosaic/data/KidsFeet.rda |binary
mosaic-0.5-1/mosaic/data/LBW.rda |only
mosaic-0.5-1/mosaic/data/Marriage.rda |binary
mosaic-0.5-1/mosaic/data/Nightlight.rda |only
mosaic-0.5-1/mosaic/data/Olympics.rda |only
mosaic-0.5-1/mosaic/data/Population.rda |only
mosaic-0.5-1/mosaic/data/Pregnancy.rda |only
mosaic-0.5-1/mosaic/data/Ratings.rda |only
mosaic-0.5-1/mosaic/data/SAT.rda |binary
mosaic-0.5-1/mosaic/data/Seed.rda |only
mosaic-0.5-1/mosaic/data/Sleep.rda |only
mosaic-0.5-1/mosaic/data/Sleep2.rda |only
mosaic-0.5-1/mosaic/data/SnowGR.rda |binary
mosaic-0.5-1/mosaic/data/SwimRecords.rda |binary
mosaic-0.5-1/mosaic/data/TV1.rda |only
mosaic-0.5-1/mosaic/data/TV2.rda |only
mosaic-0.5-1/mosaic/data/TenMileRace.rda |binary
mosaic-0.5-1/mosaic/data/Time.rda |only
mosaic-0.5-1/mosaic/data/Utilities.rda |binary
mosaic-0.5-1/mosaic/data/Utilities2.rda |binary
mosaic-0.5-1/mosaic/data/Whickham.rda |binary
mosaic-0.5-1/mosaic/inst/NEWS.Rd | 24 +
mosaic-0.5-1/mosaic/inst/doc/Calculus-src.pdf |binary
mosaic-0.5-1/mosaic/inst/doc/Calculus.pdf |binary
mosaic-0.5-1/mosaic/inst/doc/Resampling-src.pdf |binary
mosaic-0.5-1/mosaic/inst/doc/Resampling.pdf |binary
mosaic-0.5-1/mosaic/inst/tests/test-aggregating.R | 5
mosaic-0.5-1/mosaic/inst/tests/test-calculus.R | 61 ++-
mosaic-0.5-1/mosaic/inst/tests/test-findZeros.R |only
mosaic-0.5-1/mosaic/inst/tests/test-fitModel.R |only
mosaic-0.5-1/mosaic/inst/tests/test-groupwiseModels.R |only
mosaic-0.5-1/mosaic/inst/tests/test-linearAlgebra.R | 12
mosaic-0.5-1/mosaic/inst/tests/test-makeFunction.R | 63 +++
mosaic-0.5-1/mosaic/inst/tests/test-pqrdata.R |only
mosaic-0.5-1/mosaic/inst/tests/test-tabulation.R | 17
mosaic-0.5-1/mosaic/man/Actors.Rd |only
mosaic-0.5-1/mosaic/man/Animals.Rd |only
mosaic-0.5-1/mosaic/man/Autopremiums.Rd |only
mosaic-0.5-1/mosaic/man/Baby.Rd |only
mosaic-0.5-1/mosaic/man/Births78.Rd | 3
mosaic-0.5-1/mosaic/man/Birthweight.Rd |only
mosaic-0.5-1/mosaic/man/Bodyimage.Rd |only
mosaic-0.5-1/mosaic/man/CPS85.Rd |only
mosaic-0.5-1/mosaic/man/Calculus.Rd | 39 +-
mosaic-0.5-1/mosaic/man/Cards.Rd | 5
mosaic-0.5-1/mosaic/man/Cellphones.Rd |only
mosaic-0.5-1/mosaic/man/Computers.Rd |only
mosaic-0.5-1/mosaic/man/CoolingWater.Rd |only
mosaic-0.5-1/mosaic/man/Depression.Rd |only
mosaic-0.5-1/mosaic/man/Drinking.Rd |only
mosaic-0.5-1/mosaic/man/Drinks.Rd |only
mosaic-0.5-1/mosaic/man/EPA.Rd |only
mosaic-0.5-1/mosaic/man/Flicker.Rd |only
mosaic-0.5-1/mosaic/man/Friends.Rd |only
mosaic-0.5-1/mosaic/man/FunctionsFromData.Rd | 8
mosaic-0.5-1/mosaic/man/Galton.Rd | 3
mosaic-0.5-1/mosaic/man/Gestation.Rd | 3
mosaic-0.5-1/mosaic/man/Gradebook.Rd |only
mosaic-0.5-1/mosaic/man/Graduation.Rd |only
mosaic-0.5-1/mosaic/man/Guns.Rd |only
mosaic-0.5-1/mosaic/man/HELP.Rd | 3
mosaic-0.5-1/mosaic/man/HELPfull.Rd | 3
mosaic-0.5-1/mosaic/man/HELPmiss.Rd | 3
mosaic-0.5-1/mosaic/man/HELPrct.Rd | 3
mosaic-0.5-1/mosaic/man/Heightweight.Rd |only
mosaic-0.5-1/mosaic/man/KidsFeet.Rd | 3
mosaic-0.5-1/mosaic/man/LBW.Rd |only
mosaic-0.5-1/mosaic/man/Marriage.Rd | 3
mosaic-0.5-1/mosaic/man/Nightlight.Rd |only
mosaic-0.5-1/mosaic/man/Olympics.Rd |only
mosaic-0.5-1/mosaic/man/Population.Rd |only
mosaic-0.5-1/mosaic/man/Pregnancy.Rd |only
mosaic-0.5-1/mosaic/man/Ratings.Rd |only
mosaic-0.5-1/mosaic/man/SAT.Rd | 3
mosaic-0.5-1/mosaic/man/Seed.Rd |only
mosaic-0.5-1/mosaic/man/Sleep.Rd |only
mosaic-0.5-1/mosaic/man/Sleep2.Rd |only
mosaic-0.5-1/mosaic/man/SnowGR.Rd | 3
mosaic-0.5-1/mosaic/man/SwimRecords.Rd | 3
mosaic-0.5-1/mosaic/man/TV1.Rd |only
mosaic-0.5-1/mosaic/man/TV2.Rd |only
mosaic-0.5-1/mosaic/man/TenMileRace.Rd | 3
mosaic-0.5-1/mosaic/man/Time.Rd |only
mosaic-0.5-1/mosaic/man/Utilities.Rd | 3
mosaic-0.5-1/mosaic/man/Utilities2.Rd | 3
mosaic-0.5-1/mosaic/man/Whickham.Rd | 3
mosaic-0.5-1/mosaic/man/aggregating-methods.Rd | 90 ++++-
mosaic-0.5-1/mosaic/man/binom.test.Rd | 29 +
mosaic-0.5-1/mosaic/man/coef.Rd |only
mosaic-0.5-1/mosaic/man/do.Rd | 14
mosaic-0.5-1/mosaic/man/evalFormula.Rd | 10
mosaic-0.5-1/mosaic/man/evalSubFormula.Rd | 9
mosaic-0.5-1/mosaic/man/expandFun.Rd |only
mosaic-0.5-1/mosaic/man/favstats.Rd | 18 +
mosaic-0.5-1/mosaic/man/fetchData.Rd | 6
mosaic-0.5-1/mosaic/man/findZeros.Rd | 10
mosaic-0.5-1/mosaic/man/findZerosMult.Rd |only
mosaic-0.5-1/mosaic/man/fitModel.Rd |only
mosaic-0.5-1/mosaic/man/fitSpline.Rd |only
mosaic-0.5-1/mosaic/man/interval.Rd | 19 -
mosaic-0.5-1/mosaic/man/linear.algebra.Rd | 60 ---
mosaic-0.5-1/mosaic/man/makeFun.Rd | 32 +
mosaic-0.5-1/mosaic/man/mm.Rd |only
mosaic-0.5-1/mosaic/man/model.vars.Rd | 2
mosaic-0.5-1/mosaic/man/panel.levelcontourplot.Rd | 2
mosaic-0.5-1/mosaic/man/plotFun.Rd | 23 -
mosaic-0.5-1/mosaic/man/plotPoints.Rd |only
mosaic-0.5-1/mosaic/man/project-methods.Rd |only
mosaic-0.5-1/mosaic/man/prop.test.Rd | 32 +
mosaic-0.5-1/mosaic/man/tally-methods.Rd |only
mosaic-0.5-1/mosaic/mosaic-manual.pdf |binary
mosaic-0.5-1/mosaic/mosaic.Rproj | 1
179 files changed, 1249 insertions(+), 764 deletions(-)
Title: Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging
Diff between adabag versions 3.0 dated 2011-12-22 and 3.1 dated 2012-07-05
Description: This package implements Freund and Schapire's Adaboost.M1
algorithm and Breiman's Bagging algorithm using classification
trees as individual classifiers. Once these classifiers have
been trained, they can be used to predict on new data. Also,
cross validation predictions can be done. Since version 2.0
the function "margins" is available to calculate the margins
for these classifiers. Also a higher flexibility is achieved
giving access to the "rpart.control" argument of "rpart". Four
important new features were introduced on version 3.0,
AdaBoost-SAMME (Zhu et al., 2009) is implemented and a new
function "errorevol" shows the error of the ensembles as a
function of the number of iterations. In addition, the
ensembles can be pruned using the option "newmfinal" in the
predict.bagging and predict.boosting functions and the
posterior probability of each class for observations can be
obtained. Version 3.1 modifies the relative importance measure
to take into account the gain of the Gini index given by a
variable in each tree and the weights of these trees.
Author: Alfaro-Cortes, Esteban; Gamez-Martinez, Matias and
Garcia-Rubio, Noelia
Maintainer: Esteban Alfaro-Cortes
DESCRIPTION | 42 +++++++++++++++++++++-------------
MD5 | 29 ++++++++++++-----------
NAMESPACE |only
R/adaboost.M1.R | 24 ++++++++++++++++++-
R/bagging.R | 24 +++++++++++++++++--
R/bagging.cv.R | 10 ++++----
R/boosting.cv.R | 8 +++---
man/adabag-package.Rd | 59 ++++++++++++++++++++++++++++++++++++------------
man/bagging.Rd | 7 ++---
man/bagging.cv.Rd | 7 +----
man/boosting.Rd | 27 ++++++++++++---------
man/boosting.cv.Rd | 4 ---
man/errorevol.rd | 35 +---------------------------
man/margins.Rd | 30 +++++++++++++-----------
man/predict.bagging.Rd | 7 ++---
man/predict.boosting.Rd | 5 +---
16 files changed, 183 insertions(+), 135 deletions(-)
Title: Computes the noncentral gamma function
Diff between ncg versions 0.1.0 dated 2012-06-19 and 0.1.1 dated 2012-07-05
Description: Computes the noncentral gamma function: pdf, cdf, quantile
function and inverse for the noncentrality parameter.
Author: Daniel Furtado Ferreira, Izabela Regina Cardoso de Oliveira and
Fernando Henrique Toledo
Maintainer: Daniel Furtado Ferreira
DESCRIPTION | 6 +++---
MD5 | 14 +++++++-------
R/cdfNcGamma.R | 12 ++++++------
R/deltaNcGamma.R | 4 ++--
R/pdfNcGamma.R | 4 ++--
R/qNcGamma.R | 4 ++--
man/ncg.Rd | 9 +--------
man/pgammanc.Rd | 4 ++--
8 files changed, 25 insertions(+), 32 deletions(-)
Title: timereg package for Flexible regression models for survival
data.
Diff between timereg versions 1.6-5 dated 2012-05-07 and 1.6-7 dated 2012-07-05
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparametric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in ahaz package.
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Maintainer: Thomas Scheike
DESCRIPTION | 8 ++--
MD5 | 28 +++++++-------
NAMESPACE | 1
R/aalen.r | 11 +++--
R/base.r | 78 ++++++++++++++++++++++++++++++++++++++--
R/comprisk.r | 31 ++++++++--------
R/new.aalen.r | 13 ++++--
R/new.cox-aalen.r | 16 ++++----
R/two-stage-reg.r | 94 +++++++++++++++++++++++++++++++++++++++++--------
man/comp.risk.Rd | 3 +
man/internal-addreg.Rd | 1
man/two.stage.reg.Rd | 12 +++---
src/aalen.c | 27 ++++++++------
src/comprisk.c | 50 +++++++++++++++++++-------
src/two-stage-reg.c | 26 +++++++------
15 files changed, 292 insertions(+), 107 deletions(-)
Title: Six Sigma Tools for Quality and Process Improvement
Diff between SixSigma versions 0.6.0 dated 2012-03-01 and 0.6.1 dated 2012-07-05
Description: This package contains functions and utilities to perform
Statistical Analyses in the Six Sigma way. Through the DMAIC
cycle (Define, Measure, Analyze, Improve, Control), you can
manage several Quality Management studies: Gage R&R, Capability
Analysis, Control Charts, Loss Function Analysis, etc. Data
frames used in "Six Sigma with R" (Springer, 2012) are also
included in the package.
Author: Emilio L. Cano and Javier M. Moguerza and Andres Redchuk
Maintainer: Emilio L. Cano
SixSigma-0.6.0/SixSigma/inst/doc/helicopterDesign.pdf |only
SixSigma-0.6.0/SixSigma/inst/doc/helides.pdf |only
SixSigma-0.6.1/SixSigma/DESCRIPTION | 18 -
SixSigma-0.6.1/SixSigma/MD5 | 75 ++--
SixSigma-0.6.1/SixSigma/NAMESPACE | 3
SixSigma-0.6.1/SixSigma/NEWS | 6
SixSigma-0.6.1/SixSigma/R/ss.ca.R | 2
SixSigma-0.6.1/SixSigma/R/ss.ci.R | 1
SixSigma-0.6.1/SixSigma/R/ss.lfa.R | 203 ++++++++----
SixSigma-0.6.1/SixSigma/data/ss.data.batteries.RData |only
SixSigma-0.6.1/SixSigma/inst/CITATION | 15
SixSigma-0.6.1/SixSigma/inst/doc/HelicopterInstructions.pdf |binary
SixSigma-0.6.1/SixSigma/man/SixSigma-package.Rd | 48 +-
SixSigma-0.6.1/SixSigma/man/ss.ca.indices.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.ca.yield.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.cc.Rd | 8
SixSigma-0.6.1/SixSigma/man/ss.ceDiag.Rd | 13
SixSigma-0.6.1/SixSigma/man/ss.ci.Rd | 8
SixSigma-0.6.1/SixSigma/man/ss.data.batteries.Rd |only
SixSigma-0.6.1/SixSigma/man/ss.data.bolts.Rd | 6
SixSigma-0.6.1/SixSigma/man/ss.data.ca.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.doe1.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.doe2.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.pastries.Rd | 8
SixSigma-0.6.1/SixSigma/man/ss.data.pb1.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.pb2.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.pb3.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.pb4.Rd | 11
SixSigma-0.6.1/SixSigma/man/ss.data.pc.Rd | 9
SixSigma-0.6.1/SixSigma/man/ss.data.pc.big.Rd | 8
SixSigma-0.6.1/SixSigma/man/ss.data.pc.r.Rd | 12
SixSigma-0.6.1/SixSigma/man/ss.data.rr.Rd | 9
SixSigma-0.6.1/SixSigma/man/ss.data.strings.Rd | 7
SixSigma-0.6.1/SixSigma/man/ss.heli.Rd | 7
SixSigma-0.6.1/SixSigma/man/ss.lf.Rd | 7
SixSigma-0.6.1/SixSigma/man/ss.lfa.Rd | 14
SixSigma-0.6.1/SixSigma/man/ss.pMap.Rd | 9
SixSigma-0.6.1/SixSigma/man/ss.rr.Rd | 19 -
SixSigma-0.6.1/SixSigma/man/ss.study.ca.Rd | 11
SixSigma-0.6.1/SixSigma/vignettes |only
40 files changed, 428 insertions(+), 197 deletions(-)
Title: Set the value of options("width") on terminal emulators
Diff between setwidth versions 0.9-4 dated 2011-12-03 and 1.0-0 dated 2012-07-05
Description: Automatically sets the value of options("width") when the
terminal emulator is resized. The functions of this package
only work if R is compiled for Linux systems and it is running
interactively in a terminal emulator.
Author: Jakson Aquino
Maintainer: Jakson Alves de Aquino
DESCRIPTION | 14 +++++++-------
LICENSE |only
MD5 | 7 ++++---
NEWS | 4 ++++
src/setwidth.c | 3 +--
5 files changed, 16 insertions(+), 12 deletions(-)
Title: Bayesian network structure learning, parameter learning and
inference
Diff between bnlearn versions 2.9 dated 2012-03-05 and 3.0 dated 2012-07-05
Description: Bayesian network structure learning (via constraint-based,
score-based and hybrid algorithms), parameter learning (via ML
and Bayesian estimators) and inference. This package
implements the Grow-Shrink (GS) algorithm, the Incremental
Association (IAMB) algorithm, the Interleaved-IAMB (Inter-IAMB)
algorithm, the Fast-IAMB (Fast-IAMB) algorithm, the Max-Min
Parents and Children (MMPC) algorithm, the Hiton-PC algorithm,
the ARACNE and Chow-Liu algorithms, the Hill-Climbing (HC)
greedy search algorithm, the Tabu Search (TABU) algorithm, the
Max-Min Hill-Climbing (MMHC) algorithm and the two-stage
Restricted Maximization (RSMAX2) algorithm for both discrete
and Gaussian networks, along with many score functions and
conditional independence tests. The Naive Bayes and the
Tree-Augmented Naive Bayes (TAN) classifiers are also
implemented. Some utility functions (model comparison and
manipulation, random data generation, arc orientation testing,
simple and advanced plots) are included, as well as support for
parameter estimation and inference, conditional probability
queries and cross-validation.
Author: Marco Scutari
Maintainer: Marco Scutari
bnlearn-2.9/bnlearn/R/naive.bayes.R |only
bnlearn-2.9/bnlearn/R/tan.R |only
bnlearn-3.0/bnlearn/Changelog | 25 +-
bnlearn-3.0/bnlearn/DESCRIPTION | 34 +-
bnlearn-3.0/bnlearn/MD5 | 145 ++++++-----
bnlearn-3.0/bnlearn/NAMESPACE | 11
bnlearn-3.0/bnlearn/R/arc.operations.R | 2
bnlearn-3.0/bnlearn/R/arc.strength.R | 2
bnlearn-3.0/bnlearn/R/backend-indep.R | 101 ++++----
bnlearn-3.0/bnlearn/R/bootstrap.R | 4
bnlearn-3.0/bnlearn/R/choose.direction.R | 4
bnlearn-3.0/bnlearn/R/chow.liu.R | 7
bnlearn-3.0/bnlearn/R/classifiers.R |only
bnlearn-3.0/bnlearn/R/cpq.R | 59 +++-
bnlearn-3.0/bnlearn/R/discretize.R | 4
bnlearn-3.0/bnlearn/R/fast-iamb.R | 11
bnlearn-3.0/bnlearn/R/fit.R | 12
bnlearn-3.0/bnlearn/R/foreign-read.R | 208 ++++++++++++----
bnlearn-3.0/bnlearn/R/frontend-arcs.R | 42 +++
bnlearn-3.0/bnlearn/R/frontend-bn.R | 29 ++
bnlearn-3.0/bnlearn/R/frontend-fit.R | 198 ++++++++++++++++
bnlearn-3.0/bnlearn/R/frontend-foreign.R | 6
bnlearn-3.0/bnlearn/R/frontend-graph.R | 25 --
bnlearn-3.0/bnlearn/R/frontend-learning.R | 40 ++-
bnlearn-3.0/bnlearn/R/frontend-packages.R | 6
bnlearn-3.0/bnlearn/R/frontend-predict.R | 32 ++
bnlearn-3.0/bnlearn/R/frontend-print.R | 11
bnlearn-3.0/bnlearn/R/frontend-s4.R | 35 ++
bnlearn-3.0/bnlearn/R/frontend-score.R | 2
bnlearn-3.0/bnlearn/R/globals.R | 5
bnlearn-3.0/bnlearn/R/graphviz.R | 14 +
bnlearn-3.0/bnlearn/R/grow-shrink.R | 11
bnlearn-3.0/bnlearn/R/hiton-pc.R |only
bnlearn-3.0/bnlearn/R/incremental-association.R | 14 -
bnlearn-3.0/bnlearn/R/inter-iamb.R | 11
bnlearn-3.0/bnlearn/R/learning-algorithms.R | 212 +++++++++++++++--
bnlearn-3.0/bnlearn/R/loss.R | 37 ---
bnlearn-3.0/bnlearn/R/maxmin-pc.R | 11
bnlearn-3.0/bnlearn/R/predict.R | 8
bnlearn-3.0/bnlearn/R/scores.R | 4
bnlearn-3.0/bnlearn/R/simulation.R | 13 -
bnlearn-3.0/bnlearn/R/tabu.R | 21 +
bnlearn-3.0/bnlearn/R/test.R | 24 +
bnlearn-3.0/bnlearn/R/utils-amat.R | 4
bnlearn-3.0/bnlearn/R/utils-graph.R | 28 ++
bnlearn-3.0/bnlearn/R/utils-misc.R | 14 -
bnlearn-3.0/bnlearn/R/utils-sanitization.R | 295 +++++++++++++++++++++++-
bnlearn-3.0/bnlearn/R/utils-tests.R | 37 ---
bnlearn-3.0/bnlearn/a |only
bnlearn-3.0/bnlearn/inst/bibtex/bnlearn.bib | 22 +
bnlearn-3.0/bnlearn/man/bn.class.Rd | 3
bnlearn-3.0/bnlearn/man/bn.fit.Rd | 58 ++++
bnlearn-3.0/bnlearn/man/bn.fit.class.Rd | 3
bnlearn-3.0/bnlearn/man/bnboot.Rd | 12
bnlearn-3.0/bnlearn/man/bnlearn-package.Rd | 95 +++++--
bnlearn-3.0/bnlearn/man/constraint.Rd | 15 -
bnlearn-3.0/bnlearn/man/cpquery.Rd | 20 +
bnlearn-3.0/bnlearn/man/dsep.Rd |only
bnlearn-3.0/bnlearn/man/graph.Rd | 5
bnlearn-3.0/bnlearn/man/graphviz.plot.Rd | 7
bnlearn-3.0/bnlearn/man/hc.Rd | 4
bnlearn-3.0/bnlearn/man/hybrid.Rd | 4
bnlearn-3.0/bnlearn/man/learn.Rd |only
bnlearn-3.0/bnlearn/man/mb.Rd | 30 +-
bnlearn-3.0/bnlearn/man/mmpc.Rd | 34 +-
bnlearn-3.0/bnlearn/man/naive.bayes.Rd | 47 ++-
bnlearn-3.0/bnlearn/src/acyclic.c | 109 --------
bnlearn-3.0/bnlearn/src/common.h | 12
bnlearn-3.0/bnlearn/src/linear.algebra.c | 45 ---
bnlearn-3.0/bnlearn/src/linear.correlation.c | 50 +++-
bnlearn-3.0/bnlearn/src/mi.matrix.c | 56 +++-
bnlearn-3.0/bnlearn/src/monte.carlo.c | 27 --
bnlearn-3.0/bnlearn/src/mutual.information.c | 50 +---
bnlearn-3.0/bnlearn/src/parse.c | 8
bnlearn-3.0/bnlearn/src/predict.c | 107 ++++++--
bnlearn-3.0/bnlearn/src/sampling.c | 2
bnlearn-3.0/bnlearn/src/simulation.c | 16 -
77 files changed, 1886 insertions(+), 773 deletions(-)
Title: Spatio-Temporal Bayesian Modelling Using R
Diff between spTimer versions 0.01 dated 2012-06-14 and 0.02 dated 2012-07-05
Description: The package is able to fit, spatially predict and
temporally forecast large amounts of space-time data using [1]
Bayesian Gaussian Process (GP) Models, [2] Bayesian
Auto-Regressive (AR) Models, and [3] Bayesian Gaussian
Predictive Processes (GPP) based AR Models.
Author: K. Shuvo Bakar & Sujit K. Sahu
Maintainer: Khandoker Shuvo Bakar
DESCRIPTION | 20 ++++++++++++--------
MD5 | 4 ++--
man/spTimer-package.Rd | 10 +++-------
3 files changed, 17 insertions(+), 17 deletions(-)
Title: Dynamic generation of scientific reports
Diff between R.rsp versions 0.7.5 dated 2012-03-21 and 0.8.2 dated 2012-07-05
Description: An RSP document is a text-based document containing an
R-embedded template of the final document, e.g. "Today's date
is <%=Sys.Date()%>". An RSP document is preprocessed, parsed
and translated into an R script, which when sourced generates
the final document. This way it is possible to dynamically
generate reports in plain text, HTML, TeX etc, e.g.
"\includegraphics{<%=toPDF('Normal', { curve(dnorm, from=-5,
to=+5) })%>}". It can also be used to enhance other literate
programming languages such as Sweave, e.g.
"<
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson
DESCRIPTION | 16 +++++++-------
MD5 | 16 +++++++-------
NAMESPACE | 5 ++--
inst/NEWS | 16 ++++++++++++++
inst/doc/Dynamic_LaTeX_reports_with_RSP.pdf |binary
inst/doc/Dynamic_LaTeX_reports_with_RSP.tex.rsp | 6 ++---
inst/doc/NonSweaveVignettes.pdf |binary
inst/doc/NonSweaveVignettes.tex.rsp | 21 ++++++++++--------
inst/doc/templates/Makefile | 27 ++----------------------
9 files changed, 53 insertions(+), 54 deletions(-)
Title: R Client for Mobilize/Andwellness server
Diff between Ohmage versions 2.11-1 dated 2012-05-30 and 2.11-2 dated 2012-07-05
Description: R Client for Mobilize and Andwellness server. Implements
basic R functions to call and process data.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 19 ++++---------------
MD5 | 11 ++++++-----
NAMESPACE | 2 +-
R/multifactor.R | 5 +++--
R/oh.mobility.read.R | 30 ++++++++++++++----------------
R/records2df.R |only
man/multifactor.Rd | 2 +-
7 files changed, 29 insertions(+), 40 deletions(-)
Title: Mobilize plots and functions
Diff between Mobilize versions 2.11-1 dated 2012-05-30 and 2.11-2 dated 2012-07-05
Description: Some canned plots and functions designed for the mobilize
project. Designed to be called remotely.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
R/biplot.R | 4 ++--
R/scatterplot.R | 4 ++--
R/timeplot.R | 50 ++++++++++++++++++++++++++++----------------------
R/userplot.R | 10 +++++-----
6 files changed, 45 insertions(+), 39 deletions(-)
Title: Analysis of geostatistical data
Diff between geoR versions 1.7-3 dated 2012-06-29 and 1.7-4 dated 2012-07-05
Description: Geostatistical analysis including traditional,
likelihood-based and Bayesian methods.
Author: Paulo J. Ribeiro Jr
Maintainer: Paulo J. Ribeiro Jr
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++------
R/geodata.R | 3 ++-
R/kriging.R | 9 +++++++--
data/gambia.rda |binary
inst/CHANGES | 20 ++++++++++++++++++++
man/plot.variogram.Rd | 2 +-
7 files changed, 41 insertions(+), 15 deletions(-)