Title: Running OpenBUGS from R
Diff between R2OpenBUGS versions 3.2-1.4 dated 2012-02-15 and 3.2-2.1 dated 2012-07-09
Description: Using this package, it is possible to call a BUGS model,
summarize inferences and convergence in a table and graph, and
save the simulations in arrays for easy access in R.
Author: originally written as R2WinBUGS by Andrew Gelman
Maintainer: Neal Thomas
DESCRIPTION | 10 +++++-----
MD5 | 12 ++++++------
R/bugs.log.R | 4 +++-
R/bugs.sims.R | 2 +-
inst/NEWS | 5 +++++
man/bugs.Rd | 6 +++---
man/bugs.log.Rd | 4 ++--
7 files changed, 25 insertions(+), 18 deletions(-)
Title: SIMulated Structural Equation Modeling.
Diff between simsem versions 0.2-0 dated 2012-05-18 and 0.2-8 dated 2012-07-09
Description: This package can be used to generate data using the
structural equation modeling framework. This package is
tailored to use those simulated data for various purposes, such
as model fit evaluation, power analysis, or missing data
handling and planning.
Author: Sunthud Pornprasertmanit
Maintainer: Sunthud Pornprasertmanit
simsem-0.2-0/simsem/R/continuousPower.R |only
simsem-0.2-0/simsem/R/getPopulation.R |only
simsem-0.2-0/simsem/R/getPower-methods.R |only
simsem-0.2-0/simsem/R/indProd.R |only
simsem-0.2-0/simsem/R/plotPower-methods.R |only
simsem-0.2-0/simsem/R/popMisfit.R |only
simsem-0.2-0/simsem/R/residualCovariate.R |only
simsem-0.2-0/simsem/R/setPopulation.R |only
simsem-0.2-0/simsem/R/summaryPopulation.R |only
simsem-0.2-0/simsem/man/indProd.Rd |only
simsem-0.2-0/simsem/man/residualCovariate.Rd |only
simsem-0.2-8/simsem/DESCRIPTION | 21 -
simsem-0.2-8/simsem/MD5 | 278 +++++++++++--------
simsem-0.2-8/simsem/NAMESPACE | 16 -
simsem-0.2-8/simsem/R/AllClass.R | 128 ++++----
simsem-0.2-8/simsem/R/AllGenerics.R | 38 +-
simsem-0.2-8/simsem/R/anova-methods.R | 128 +++++---
simsem-0.2-8/simsem/R/bind.R |only
simsem-0.2-8/simsem/R/checkInputValue.R | 3
simsem-0.2-8/simsem/R/clean.R | 20 +
simsem-0.2-8/simsem/R/combineObject-methods.R | 9
simsem-0.2-8/simsem/R/constrainMatrices-methods.R | 7
simsem-0.2-8/simsem/R/countFreeParameters-methods.R | 18 -
simsem-0.2-8/simsem/R/cov2corMod.R | 2
simsem-0.2-8/simsem/R/createData.R | 3
simsem-0.2-8/simsem/R/createFreeParameters.R | 3
simsem-0.2-8/simsem/R/createImpliedMACS-methods.R | 3
simsem-0.2-8/simsem/R/defaultStartingValues.R | 3
simsem-0.2-8/simsem/R/divideObject-methods.R | 5
simsem-0.2-8/simsem/R/drawParameters.R | 3
simsem-0.2-8/simsem/R/expandMatrices.R | 5
simsem-0.2-8/simsem/R/extract-methods.R | 8
simsem-0.2-8/simsem/R/extractLavaanFit.R | 5
simsem-0.2-8/simsem/R/fillParam.R | 5
simsem-0.2-8/simsem/R/findFactorResidualVar.R | 3
simsem-0.2-8/simsem/R/findFactorTotalCov.R | 4
simsem-0.2-8/simsem/R/findFactorTotalVar.R | 3
simsem-0.2-8/simsem/R/findIndIntercept.R | 3
simsem-0.2-8/simsem/R/findIndResidualVar.R | 3
simsem-0.2-8/simsem/R/findPossibleFactorCor.R | 3
simsem-0.2-8/simsem/R/findPower.R |only
simsem-0.2-8/simsem/R/findRowZero.R | 3
simsem-0.2-8/simsem/R/fitMeasuresChi.R | 3
simsem-0.2-8/simsem/R/getCondQtile.R |only
simsem-0.2-8/simsem/R/getCutoff-methods.R | 55 +++
simsem-0.2-8/simsem/R/getCutoffNested.R |only
simsem-0.2-8/simsem/R/getCutoffNonNested.R |only
simsem-0.2-8/simsem/R/getKeywords.R | 9
simsem-0.2-8/simsem/R/getPopulation-methods.R |only
simsem-0.2-8/simsem/R/getPower.R |only
simsem-0.2-8/simsem/R/getPowerFit-methods.R |only
simsem-0.2-8/simsem/R/getPowerFitNested-methods.R |only
simsem-0.2-8/simsem/R/getPowerFitNonNested-methods.R |only
simsem-0.2-8/simsem/R/imposeMissing.R | 41 +-
simsem-0.2-8/simsem/R/isDefault.R | 3
simsem-0.2-8/simsem/R/isRandom-methods.R | 16 -
simsem-0.2-8/simsem/R/likRatioFit.R |only
simsem-0.2-8/simsem/R/makeLabels-methods.R | 8
simsem-0.2-8/simsem/R/miPool.R | 7
simsem-0.2-8/simsem/R/overlapHist.R | 3
simsem-0.2-8/simsem/R/pValue-methods.R | 223 ++++++++++++++-
simsem-0.2-8/simsem/R/pValueNested.R |only
simsem-0.2-8/simsem/R/pValueNonNested.R |only
simsem-0.2-8/simsem/R/parTable.R |only
simsem-0.2-8/simsem/R/plot3DQtile.R | 3
simsem-0.2-8/simsem/R/plotCutoff-methods.R | 27 +
simsem-0.2-8/simsem/R/plotCutoffNested.R |only
simsem-0.2-8/simsem/R/plotCutoffNonNested.R |only
simsem-0.2-8/simsem/R/plotPower.R |only
simsem-0.2-8/simsem/R/plotPowerFit.R |only
simsem-0.2-8/simsem/R/plotPowerFitNested.R |only
simsem-0.2-8/simsem/R/plotPowerFitNonNested.R |only
simsem-0.2-8/simsem/R/plotQtile.R | 28 +
simsem-0.2-8/simsem/R/popMisfit-methods.R |only
simsem-0.2-8/simsem/R/printIfNotNull.R | 3
simsem-0.2-8/simsem/R/reassignNames.R | 10
simsem-0.2-8/simsem/R/reduceConstraint.R | 3
simsem-0.2-8/simsem/R/reduceMatrices.R | 4
simsem-0.2-8/simsem/R/run-methods.R | 64 ++--
simsem-0.2-8/simsem/R/runFit-methods.R | 38 +-
simsem-0.2-8/simsem/R/runFitParam-methods.R |only
simsem-0.2-8/simsem/R/runLavaan.R | 11
simsem-0.2-8/simsem/R/runMI.R | 30 +-
simsem-0.2-8/simsem/R/runMisspec.R | 3
simsem-0.2-8/simsem/R/runRep.r | 28 +
simsem-0.2-8/simsem/R/setOpenMxObject-methods.R | 4
simsem-0.2-8/simsem/R/setPopulation-methods.R |only
simsem-0.2-8/simsem/R/simData-methods.R | 30 +-
simsem-0.2-8/simsem/R/simDataDist.R | 4
simsem-0.2-8/simsem/R/simMatrix.R | 4
simsem-0.2-8/simsem/R/simMissing.R | 9
simsem-0.2-8/simsem/R/simMisspecCFA.R | 11
simsem-0.2-8/simsem/R/simMisspecPath.R | 14
simsem-0.2-8/simsem/R/simMisspecSEM.R | 22 -
simsem-0.2-8/simsem/R/simModel-methods.R | 21 -
simsem-0.2-8/simsem/R/simParamPath.R | 3
simsem-0.2-8/simsem/R/simParamSEM.R | 3
simsem-0.2-8/simsem/R/simResult.R | 32 +-
simsem-0.2-8/simsem/R/simResultParam.R | 44 +--
simsem-0.2-8/simsem/R/simSetCFA.R | 7
simsem-0.2-8/simsem/R/simSetPath.R | 10
simsem-0.2-8/simsem/R/simSetSEM.R | 17 -
simsem-0.2-8/simsem/R/simVector.R | 4
simsem-0.2-8/simsem/R/standardize-methods.R | 86 +++--
simsem-0.2-8/simsem/R/startingValues-methods.R | 5
simsem-0.2-8/simsem/R/summary-methods.R | 64 ++--
simsem-0.2-8/simsem/R/summaryFit-methods.R |only
simsem-0.2-8/simsem/R/summaryMisspec-methods.R |only
simsem-0.2-8/simsem/R/summaryPopulation-methods.R |only
simsem-0.2-8/simsem/R/symMatrix.R | 4
simsem-0.2-8/simsem/R/tagHeaders-methods.R | 3
simsem-0.2-8/simsem/R/toSimSet.R | 3
simsem-0.2-8/simsem/R/validatePath.R | 5
simsem-0.2-8/simsem/R/writeLavaanCode.R | 17 -
simsem-0.2-8/simsem/R/writeLavaanConstraint.R | 2
simsem-0.2-8/simsem/inst/tests/test_global.R |only
simsem-0.2-8/simsem/inst/tests/test_result.R |only
simsem-0.2-8/simsem/man/SimFunction-class.Rd | 11
simsem-0.2-8/simsem/man/SimMissing-class.Rd | 1
simsem-0.2-8/simsem/man/SimModelMIOut-class.Rd | 1
simsem-0.2-8/simsem/man/SimModelOut-class.Rd | 1
simsem-0.2-8/simsem/man/SimResult-class.Rd | 4
simsem-0.2-8/simsem/man/anova.Rd | 33 --
simsem-0.2-8/simsem/man/clean.Rd | 12
simsem-0.2-8/simsem/man/cleanSimResult.Rd |only
simsem-0.2-8/simsem/man/continuousPower.Rd | 12
simsem-0.2-8/simsem/man/find2Dhist.Rd |only
simsem-0.2-8/simsem/man/findPower.Rd |only
simsem-0.2-8/simsem/man/findTargetPower.Rd |only
simsem-0.2-8/simsem/man/findphist.Rd |only
simsem-0.2-8/simsem/man/getCondQtile.Rd |only
simsem-0.2-8/simsem/man/getCutoff.Rd | 25 +
simsem-0.2-8/simsem/man/getCutoffNested.Rd |only
simsem-0.2-8/simsem/man/getCutoffNonNested.Rd |only
simsem-0.2-8/simsem/man/getPower.Rd | 102 +++---
simsem-0.2-8/simsem/man/getPowerFit.Rd |only
simsem-0.2-8/simsem/man/getPowerFitNested.Rd |only
simsem-0.2-8/simsem/man/getPowerFitNonNested.Rd |only
simsem-0.2-8/simsem/man/interpolate.Rd |only
simsem-0.2-8/simsem/man/likRatioFit.Rd |only
simsem-0.2-8/simsem/man/miPoolChi.Rd | 2
simsem-0.2-8/simsem/man/multipleAllEqual.Rd |only
simsem-0.2-8/simsem/man/pValue.Rd | 29 +
simsem-0.2-8/simsem/man/pValueCondCutoff.Rd |only
simsem-0.2-8/simsem/man/pValueNested.Rd |only
simsem-0.2-8/simsem/man/pValueNonNested.Rd |only
simsem-0.2-8/simsem/man/pValueVariedCutoff.Rd |only
simsem-0.2-8/simsem/man/plotCutoff.Rd | 9
simsem-0.2-8/simsem/man/plotCutoffNested.Rd |only
simsem-0.2-8/simsem/man/plotCutoffNonNested.Rd |only
simsem-0.2-8/simsem/man/plotIndividualScatter.Rd |only
simsem-0.2-8/simsem/man/plotLogisticFit.Rd |only
simsem-0.2-8/simsem/man/plotOverHist.Rd |only
simsem-0.2-8/simsem/man/plotPower.Rd | 95 +++---
simsem-0.2-8/simsem/man/plotPowerFit.Rd |only
simsem-0.2-8/simsem/man/plotPowerFitDf.Rd |only
simsem-0.2-8/simsem/man/plotPowerFitNested.Rd |only
simsem-0.2-8/simsem/man/plotPowerFitNonNested.Rd |only
simsem-0.2-8/simsem/man/plotPowerSig.Rd |only
simsem-0.2-8/simsem/man/plotQtile.Rd | 2
simsem-0.2-8/simsem/man/plotScatter.Rd |only
simsem-0.2-8/simsem/man/predProb.Rd |only
simsem-0.2-8/simsem/man/revText.Rd |only
simsem-0.2-8/simsem/man/runFit.Rd | 15 -
simsem-0.2-8/simsem/man/runFitParam.Rd |only
simsem-0.2-8/simsem/man/runMI.Rd | 6
simsem-0.2-8/simsem/man/simData.Rd | 2
simsem-0.2-8/simsem/man/simDataDist.Rd | 4
simsem-0.2-8/simsem/man/simFunction.Rd | 9
simsem-0.2-8/simsem/man/simMissing.Rd | 5
simsem-0.2-8/simsem/man/simModel.Rd | 2
simsem-0.2-8/simsem/man/simResult.Rd | 11
simsem-0.2-8/simsem/man/skew.Rd | 2
simsem-0.2-8/simsem/man/sortList.Rd |only
simsem-0.2-8/simsem/man/summaryFit.Rd |only
simsem-0.2-8/simsem/man/summaryMisspec.Rd |only
simsem-0.2-8/simsem/man/twoTailedPValue.Rd |only
simsem-0.2-8/simsem/man/whichMonotonic.Rd |only
178 files changed, 1400 insertions(+), 776 deletions(-)
Title: Useful tools for structural equation modeling.
Diff between semTools versions 0.1-0 dated 2012-05-18 and 0.2-0 dated 2012-07-09
Description: This package provide useful tools for structural equation
modeling analysis.
Author: Sunthud Pornprasertmanit
Maintainer: Sunthud Pornprasertmanit
semTools-0.1-0/semTools/R/orthogonalize.R |only
semTools-0.1-0/semTools/man/orthogonalize.Rd |only
semTools-0.2-0/semTools/DESCRIPTION | 22 ++--
semTools-0.2-0/semTools/MD5 | 61 ++++++++++---
semTools-0.2-0/semTools/NAMESPACE | 2
semTools-0.2-0/semTools/R/dataDiagnosis.R | 42 +++++++++
semTools-0.2-0/semTools/R/fitIndices.R | 16 +--
semTools-0.2-0/semTools/R/indProd.R |only
semTools-0.2-0/semTools/R/longInvariance.R |only
semTools-0.2-0/semTools/R/measurementInvariance.R | 11 --
semTools-0.2-0/semTools/R/miPowerFit.R |only
semTools-0.2-0/semTools/R/monteCarloMed.R |only
semTools-0.2-0/semTools/R/parcelAllocation.R |only
semTools-0.2-0/semTools/R/powerAnalysis.R |only
semTools-0.2-0/semTools/R/probeInteraction.R |only
semTools-0.2-0/semTools/R/residualCovariate.R |only
semTools-0.2-0/semTools/R/runMI.R | 85 ++++++++++++-------
semTools-0.2-0/semTools/R/splitSample.R |only
semTools-0.2-0/semTools/R/zzz.R |only
semTools-0.2-0/semTools/data |only
semTools-0.2-0/semTools/man/dat2way.Rd |only
semTools-0.2-0/semTools/man/dat3way.Rd |only
semTools-0.2-0/semTools/man/exLong.Rd |only
semTools-0.2-0/semTools/man/findRMSEApower.Rd |only
semTools-0.2-0/semTools/man/findRMSEAsamplesize.Rd |only
semTools-0.2-0/semTools/man/indProd.Rd |only
semTools-0.2-0/semTools/man/kurtosis.Rd | 9 +-
semTools-0.2-0/semTools/man/longInvariance.Rd |only
semTools-0.2-0/semTools/man/mardiaKurtosis.Rd |only
semTools-0.2-0/semTools/man/mardiaSkew.Rd |only
semTools-0.2-0/semTools/man/measurementInvariance.Rd | 3
semTools-0.2-0/semTools/man/miPoolChi.Rd |only
semTools-0.2-0/semTools/man/miPowerFit.Rd |only
semTools-0.2-0/semTools/man/monteCarloMed.Rd |only
semTools-0.2-0/semTools/man/moreFitIndices.Rd | 6 +
semTools-0.2-0/semTools/man/parcelAllocation.Rd |only
semTools-0.2-0/semTools/man/plotProbe.Rd |only
semTools-0.2-0/semTools/man/plotRMSEAdist.Rd |only
semTools-0.2-0/semTools/man/plotRMSEApower.Rd |only
semTools-0.2-0/semTools/man/probe2WayMC.Rd |only
semTools-0.2-0/semTools/man/probe2WayRC.Rd |only
semTools-0.2-0/semTools/man/probe3WayMC.Rd |only
semTools-0.2-0/semTools/man/probe3WayRC.Rd |only
semTools-0.2-0/semTools/man/residualCovariate.Rd |only
semTools-0.2-0/semTools/man/runMI.Rd | 74 ++++++++++++++--
semTools-0.2-0/semTools/man/simParcel.Rd |only
semTools-0.2-0/semTools/man/skew.Rd | 9 +-
semTools-0.2-0/semTools/man/splitSample.Rd |only
48 files changed, 253 insertions(+), 87 deletions(-)
Title: Group Sequential Design
Diff between gsDesign versions 2.6-04 dated 2012-02-13 and 2.7-03 dated 2012-07-09
Description: gsDesign is a package that derives group sequential
designs and describes their properties.
Author: Keaven Anderson
Maintainer: Keaven Anderson
DESCRIPTION | 8 ++---
MD5 | 18 +++++++-----
NAMESPACE | 3 +-
R/gsSurv.R |only
R/gsqplot.R | 57 +++++++++++++++++++--------------------
R/nEvents.R | 12 ++++----
inst/NewTests/sfTruncatedTests.R |only
inst/doc/gsDesignManual.pdf |binary
man/eEvents.Rd |only
man/nSurv.Rd |only
man/nSurvival.Rd | 13 ++++++--
man/sfLinear.Rd | 2 -
12 files changed, 62 insertions(+), 51 deletions(-)
Title: Extra-binomial approach for pooled sequencing data
Diff between extraBinomial versions 2.0 dated 2012-03-06 and 2.1 dated 2012-07-09
Description: This package tests for differences in minor allele
frequency between groups and is based on an extra-binomial
variation model for pooled sequencing data.
Author: Xin Yang, Chris Wallace
Maintainer: Xin Yang
extraBinomial-2.0/extraBinomial/R/exbio-function-v2.R |only
extraBinomial-2.0/extraBinomial/R/simulation-function.R |only
extraBinomial-2.0/extraBinomial/man/mysim.Rd |only
extraBinomial-2.1/extraBinomial/DESCRIPTION | 13 ++--
extraBinomial-2.1/extraBinomial/MD5 | 12 +---
extraBinomial-2.1/extraBinomial/NAMESPACE | 2
extraBinomial-2.1/extraBinomial/R/exbio-update.R |only
extraBinomial-2.1/extraBinomial/man/exbio.Rd | 31 ++++++-----
extraBinomial-2.1/extraBinomial/man/extraBinomial-package.Rd | 19 ++----
9 files changed, 37 insertions(+), 40 deletions(-)
Title: Interface to the Emu Speech Database System
Diff between emu versions 4.2.1 dated 2011-02-11 and 4.3 dated 2012-07-09
Description: Provides an interface to the Emu speech database system
and many special purpose functions for display and analysis of
speech data.
Author: Jonathan Harrington, Tina John (package build) and others, IPS
LMU Muenchen & IPDS CAU Kiel
Maintainer: Jonathan Harrington
emu-4.2.1/emu/R/Firstlib.S |only
emu-4.2.1/emu/data/datalist |only
emu-4.2.1/emu/data/dorfric.rda |only
emu-4.2.1/emu/data/dorsal.rda |only
emu-4.2.1/emu/data/f2geraus.rda |only
emu-4.2.1/emu/data/fr.rda |only
emu-4.2.1/emu/data/keng.rda |only
emu-4.2.1/emu/data/plos.rda |only
emu-4.2.1/emu/data/sib.rda |only
emu-4.2.1/emu/data/stops10.rda |only
emu-4.2.1/emu/data/stops2.rda |only
emu-4.2.1/emu/data/timevow.rda |only
emu-4.2.1/emu/data/v.sam.rda |only
emu-4.2.1/emu/man/dorfric.Rd |only
emu-4.2.1/emu/man/dorfric.dft.Rd |only
emu-4.2.1/emu/man/dorfric.l.Rd |only
emu-4.2.1/emu/man/dorfric.lv.Rd |only
emu-4.2.1/emu/man/dorfric.vl.Rd |only
emu-4.2.1/emu/man/dorfric.w.Rd |only
emu-4.2.1/emu/man/dorsal.Rd |only
emu-4.2.1/emu/man/dorsal.bound.Rd |only
emu-4.2.1/emu/man/dorsal.clab.Rd |only
emu-4.2.1/emu/man/dorsal.epg.Rd |only
emu-4.2.1/emu/man/dorsal.fm.Rd |only
emu-4.2.1/emu/man/dorsal.sam.Rd |only
emu-4.2.1/emu/man/dorsal.vlab.Rd |only
emu-4.2.1/emu/man/f2geraus.Rd |only
emu-4.2.1/emu/man/f2geraus.l.Rd |only
emu-4.2.1/emu/man/fr.Rd |only
emu-4.2.1/emu/man/fr.dft.Rd |only
emu-4.2.1/emu/man/fr.l.Rd |only
emu-4.2.1/emu/man/fr.sp.Rd |only
emu-4.2.1/emu/man/keng.Rd |only
emu-4.2.1/emu/man/keng.dft.5.Rd |only
emu-4.2.1/emu/man/keng.l.Rd |only
emu-4.2.1/emu/man/plos.Rd |only
emu-4.2.1/emu/man/plos.asp.Rd |only
emu-4.2.1/emu/man/plos.dft.Rd |only
emu-4.2.1/emu/man/plos.l.Rd |only
emu-4.2.1/emu/man/plos.lv.Rd |only
emu-4.2.1/emu/man/plos.sam.Rd |only
emu-4.2.1/emu/man/plos.w.Rd |only
emu-4.2.1/emu/man/sib.Rd |only
emu-4.2.1/emu/man/sib.dft.Rd |only
emu-4.2.1/emu/man/sib.l.Rd |only
emu-4.2.1/emu/man/sib.w.Rd |only
emu-4.2.1/emu/man/stops.Rd |only
emu-4.2.1/emu/man/stops.bark.Rd |only
emu-4.2.1/emu/man/stops.dct.Rd |only
emu-4.2.1/emu/man/stops.dft.Rd |only
emu-4.2.1/emu/man/stops.l.Rd |only
emu-4.2.1/emu/man/stops.sp.Rd |only
emu-4.2.1/emu/man/stops10.Rd |only
emu-4.2.1/emu/man/stops10.lab.Rd |only
emu-4.2.1/emu/man/stopsvow.Rd |only
emu-4.2.1/emu/man/stopsvow.fm.Rd |only
emu-4.2.1/emu/man/stopsvow.l.Rd |only
emu-4.2.1/emu/man/timevow.Rd |only
emu-4.2.1/emu/man/timevow.dft.Rd |only
emu-4.2.1/emu/man/timevow.fm.Rd |only
emu-4.2.1/emu/man/timevow.fm5.Rd |only
emu-4.2.1/emu/man/timevow.l.Rd |only
emu-4.2.1/emu/man/v.sam.Rd |only
emu-4.3/emu/DESCRIPTION | 17 +
emu-4.3/emu/MD5 |only
emu-4.3/emu/NAMESPACE |only
emu-4.3/emu/R/AAoptions.S | 322 ++++++++++++++++--------------------
emu-4.3/emu/R/bind.S | 6
emu-4.3/emu/R/emu.track.S | 2
emu-4.3/emu/R/emuRtestsuite.S |only
emu-4.3/emu/R/epg.class.S | 2
emu-4.3/emu/R/eplot.S | 8
emu-4.3/emu/R/infos.S |only
emu-4.3/emu/R/makelab.S | 2
emu-4.3/emu/R/misc.S | 6
emu-4.3/emu/R/onAttach.S |only
emu-4.3/emu/data/bridge.rda |binary
emu-4.3/emu/data/coutts.rda |binary
emu-4.3/emu/data/coutts2.rda |binary
emu-4.3/emu/data/demo.all.rda |binary
emu-4.3/emu/data/demo.all.rms.rda |binary
emu-4.3/emu/data/demo.vowels.f0.rda |binary
emu-4.3/emu/data/demo.vowels.fm.rda |binary
emu-4.3/emu/data/demo.vowels.rda |binary
emu-4.3/emu/data/dip.rda |binary
emu-4.3/emu/data/e.dft.rda |binary
emu-4.3/emu/data/engassim.rda |binary
emu-4.3/emu/data/fric.rda |binary
emu-4.3/emu/data/isol.rda |binary
emu-4.3/emu/data/polhom.rda |binary
emu-4.3/emu/data/vowlax.rda |binary
emu-4.3/emu/man/by.trackdata.Rd | 6
emu-4.3/emu/man/dbinfo.Rd |only
emu-4.3/emu/man/ellipse.Rd | 2
emu-4.3/emu/man/emu-package.Rd |only
emu-4.3/emu/man/emu.testsuite.Rd |only
emu-4.3/emu/man/emudata.init.Rd |only
emu-4.3/emu/man/emuinfo.Rd |only
emu-4.3/emu/man/emurinfo.Rd |only
emu-4.3/emu/man/fapply.Rd | 4
100 files changed, 177 insertions(+), 200 deletions(-)
Title: Simulation of complex survival data
Diff between complex.surv.dat.sim versions 1.1 dated 2012-07-03 and 1.1.1 dated 2012-07-09
More information about complex.surv.dat.sim at CRAN
Description: Simulation of complex survival data
Author: David Moriña, Centre Tecnològic de Nutrició i Salut and Albert
Navarro, Universitat Autònoma de Barcelona
Maintainer: David Moriña
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/DESCRIPTION | 8
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/MD5 | 21
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/R/mult.ev.ncens.sim.R | 215 +++----
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/R/mult.ev.sim.R | 63 --
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/R/rec.ev.cens.sim.R | 296 +++++-----
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/R/rec.ev.ncens.sim.R | 294 ++++-----
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/complex.surv.dat.sim-Ex.R | 3
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/man/complex.surv.dat.sim-internal.Rd | 69 +-
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/man/complex.surv.dat.sim-package.Rd | 131 ++--
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/man/mult.ev.sim.Rd | 16
complex.surv.dat.sim-1.1.1/complex.surv.dat.sim/man/rec.ev.sim.Rd | 2
complex.surv.dat.sim-1.1/complex.surv.dat.sim/R/mult.ev.cens.sim.R |only
12 files changed, 533 insertions(+), 585 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-26 0.2.4-13
2011-10-19 0.2.4-12
2011-06-17 0.2.4-9
2011-05-19 0.2.4-7
2011-04-26 0.2.4-6
2011-04-24 0.2.4-4
2011-04-08 0.2.3-4
2011-04-07 0.2.3-3
2011-04-06 0.2.3-1
2011-04-06 0.2.3-2
2011-04-05 0.2.2-2
Title: HumMeth27QCReport: quality control and preprocessing of
Illumina's Infinium methylation assays.
Diff between HumMeth27QCReport versions 1.2.13 dated 2012-03-07 and 1.2.14 dated 2012-07-09
More information about HumMeth27QCReport at CRAN
Description: HumMeth27QCReport is a tool for quality control and
preprocessing of Illumina's Infinium BeadChip methylation
assays. The automated analysis pipeline comprises data import,
normalization, quality diagnostics and data export.
Author: F.M. Mancuso, G. Roma
Maintainer: F.M. Mancuso
DESCRIPTION | 10 +--
MD5 | 15 ++--
NAMESPACE | 4 -
R/HumMeth27QCReport.r | 131 +++++++++++++++++++++++++++++++++++------
inst/NEWS | 4 +
inst/doc/HumMeth27QCReport.pdf |binary
man/HumMeth27QCReport.Rd | 6 +
man/NormCheck.Rd | 7 +-
man/getFileSepChar.Rd |only
9 files changed, 139 insertions(+), 38 deletions(-)
Permanent link
Title: Variable selection for generalized linear mixed models by
L1-penalized estimation
Diff between glmmLasso versions 1.0.2 dated 2012-04-26 and 1.0.3 dated 2012-07-09
Description: Variable selection for generalized linear mixed models by
L1-penalized estimation
Author: Andreas Groll
Maintainer: Andreas Groll
glmmLasso-1.0.2/glmmLasso/data/soccer.RData |only
glmmLasso-1.0.3/glmmLasso/DESCRIPTION | 8 +--
glmmLasso-1.0.3/glmmLasso/MD5 | 16 +++----
glmmLasso-1.0.3/glmmLasso/R/glmmLasso.r | 46 +++++++++++-----------
glmmLasso-1.0.3/glmmLasso/R/glmmLassoControl.r | 6 +-
glmmLasso-1.0.3/glmmLasso/R/glmm_final.r | 7 ++-
glmmLasso-1.0.3/glmmLasso/R/likelihood.r | 10 ++++
glmmLasso-1.0.3/glmmLasso/data/soccer.rda |only
glmmLasso-1.0.3/glmmLasso/man/glmmLasso.rd | 4 -
glmmLasso-1.0.3/glmmLasso/man/glmmLassoControl.rd | 9 +++-
10 files changed, 64 insertions(+), 42 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models.
Diff between KFAS versions 0.9.9 dated 2012-07-06 and 0.9.11 dated 2012-07-09
Description: Package KFAS provides functions for Kalman filtering,
smoothing, forecasting and simulation of Gaussian, Poisson and
Binomial state space models with exact diffuse initialization
when distributions of some or all elements of initial state
vector are unknown.
Author: Jouni Helske
Maintainer: Jouni Helske
KFAS-0.9.11/KFAS/DESCRIPTION | 15
KFAS-0.9.11/KFAS/MD5 | 84 +--
KFAS-0.9.11/KFAS/R/KFAS-package.R | 47 +-
KFAS-0.9.11/KFAS/R/KFS.R | 7
KFAS-0.9.11/KFAS/R/SSModel.R | 6
KFAS-0.9.11/KFAS/R/arimaSSM.R | 5
KFAS-0.9.11/KFAS/R/print.objects.R | 2
KFAS-0.9.11/KFAS/R/structSSM.R | 8
KFAS-0.9.11/KFAS/man/KFAS.Rd | 51 +-
KFAS-0.9.11/KFAS/man/KFS.Rd | 70 +--
KFAS-0.9.11/KFAS/man/SSModel.Rd | 16
KFAS-0.9.11/KFAS/man/arimaSSM.Rd | 4
KFAS-0.9.11/KFAS/man/regSSM.Rd | 4
KFAS-0.9.11/KFAS/man/residuals.KFS.Rd | 4
KFAS-0.9.11/KFAS/man/structSSM.Rd | 16
KFAS-0.9.11/KFAS/src/allsmooth.f95 | 764 +++++++++++++++++-----------------
KFAS-0.9.11/KFAS/src/alphasim.f95 | 262 +++++------
KFAS-0.9.11/KFAS/src/alphasimnat.f95 | 264 +++++------
KFAS-0.9.11/KFAS/src/approx.f95 | 224 ++++-----
KFAS-0.9.11/KFAS/src/distsima.f95 | 270 ++++++------
KFAS-0.9.11/KFAS/src/distsimd.f95 | 286 ++++++------
KFAS-0.9.11/KFAS/src/distsimnata.f95 | 256 +++++------
KFAS-0.9.11/KFAS/src/distsimnatd.f95 | 282 ++++++------
KFAS-0.9.11/KFAS/src/distsmooth.f95 | 488 ++++++++++-----------
KFAS-0.9.11/KFAS/src/dssima.f95 | 374 ++++++++--------
KFAS-0.9.11/KFAS/src/dssimd.f95 | 414 +++++++++---------
KFAS-0.9.11/KFAS/src/epshvar.f95 | 186 ++++----
KFAS-0.9.11/KFAS/src/gloglika.f95 | 358 ++++++++-------
KFAS-0.9.11/KFAS/src/gloglikd.f95 | 372 ++++++++--------
KFAS-0.9.11/KFAS/src/glogliku.f95 | 339 +++++++--------
KFAS-0.9.11/KFAS/src/importance.f95 | 166 +++----
KFAS-0.9.11/KFAS/src/kfd2.f95 | 350 +++++++--------
KFAS-0.9.11/KFAS/src/kfilter.f95 | 364 ++++++++--------
KFAS-0.9.11/KFAS/src/kfsim.f95 | 232 +++++-----
KFAS-0.9.11/KFAS/src/kssim.f95 | 354 +++++++--------
KFAS-0.9.11/KFAS/src/ldl.f95 | 73 +--
KFAS-0.9.11/KFAS/src/ldlssm.f95 | 196 ++++----
KFAS-0.9.11/KFAS/src/ngloglik.f95 | 312 ++++++-------
KFAS-0.9.11/KFAS/src/ngsmooth.f95 | 249 +++++------
KFAS-0.9.11/KFAS/src/obssim.f95 | 270 ++++++------
KFAS-0.9.11/KFAS/src/obssimnat.f95 | 268 +++++------
KFAS-0.9.11/KFAS/src/predobs.f95 | 184 ++++----
KFAS-0.9.11/KFAS/src/statesmooth.f95 | 544 ++++++++++++------------
KFAS-0.9.9/KFAS/.project |only
KFAS-0.9.9/KFAS/.settings |only
45 files changed, 4546 insertions(+), 4494 deletions(-)
Title: EcoTroph modelling support
Diff between EcoTroph versions 1.3 dated 2012-05-25 and 1.4 dated 2012-07-09
Description: EcoTroph is an approach and software for modelling marine
and freshwater ecosystems. It is articulated entirely around
trophic levels. EcoTroph's key displays are bivariate plots,
with trophic level as the abscissa, and biomass flows or
related quantities as ordinate. Thus, trophic ecosystem
functioning can be modelled as a continuous flow of biomass
surging up the food web, from lower to higher trophic levels,
because of predation and ontogenic processes. Such an approach,
wherein species as such disappear, may be regarded as
constituting the ultimate stage in the use of the trophic level
metric for ecosystem modelling, providing a simplified but
potentially useful caricature of ecosystem functioning and
impact of fishing.
Author: J. Guitton and M. Colleter, D. Gascuel
Maintainer: Jerome Guitton
DESCRIPTION | 8 -
MD5 | 10 -
R/check.table.R | 85 ++++++------
R/create.ETdiagnosis.R | 301 +++++++++++++++++++++++-----------------------
R/create.ETmain.R | 40 ++----
man/create.ETdiagnosis.Rd | 6
6 files changed, 229 insertions(+), 221 deletions(-)
Title: Grassmann Manifold Optimization
Diff between GrassmannOptim versions 1.1 dated 2012-03-27 and 1.2 dated 2012-07-09
More information about GrassmannOptim at CRAN
Description: Optimizing a function F(U), where U is a semi-orthogonal
matrix and F is invariant under an orthogonal transformation of
U
Author: Kofi Placid Adragni and Seongho Wu
Maintainer: Kofi Placid Adragni
DESCRIPTION | 8 ++++----
MD5 | 3 ++-
inst |only
3 files changed, 6 insertions(+), 5 deletions(-)
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-04-27 0.6-1
2009-10-07 0.6-0
2009-02-03 0.5-0
2008-01-19 0.4-3
2007-09-23 0.4-2
2006-11-05 0.4-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-13 0.4.3
2011-05-25 0.4.2
2010-09-16 0.4.1
2010-05-27 0.4.0
2009-11-20 0.3.1
2009-08-20 0.3.0
2009-03-23 0.2.2
2009-03-19 0.2.0
2009-02-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-29 2.0
2009-09-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.4.1
2011-09-13 0.4.0
2011-06-24 0.3.1
2010-11-22 0.3.0
2010-11-08 0.2.0
2010-09-21 0.1.1
2009-11-20 0.0.2
2009-08-20 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.1.2
2011-05-25 0.1.1
2010-11-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-04 0.2
2011-01-03 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.3.0
2011-09-13 0.2.0
2011-05-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.1.2
2010-09-21 0.1.1
2010-05-10 0.0.2
2010-02-25 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.3.1
2010-06-15 0.3.0
2010-05-27 0.2.4
2010-02-06 0.2.1
2009-11-20 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-27 0.6.1
2011-09-13 0.6.0
2010-11-27 0.5.0
2010-09-16 0.4.2
2010-05-10 0.4.1
2010-02-13 0.4.0
2010-01-20 0.3.1
2010-01-11 0.3.0
2009-12-09 0.2.1
2009-12-06 0.1.0