CRANberries

Tue, 10 Jul 2012

Package RcppEigen updated to version 0.3.0 with previous version 0.2.0 dated 2012-03-12

Title: Rcpp integration for the Eigen templated linear algebra library.
Description: R and Eigen integration using Rcpp. Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on Lapack and level-3 BLAS. The RcppEigen package includes the header files from the Eigen C++ template library (currently version 3.1.0). Thus users do not need to install Eigen itself in order to use RcppEigen. Eigen is licensed under the GNU LGPL version 3 or later, and also under the GNU GPL version 2 or later. RcppEigen (the Rcpp bindings/bridge to Eigen) is licensed under the GNU GPL version 2 or later, as is the rest of Rcpp.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel
Maintainer: Douglas Bates

Diff between RcppEigen versions 0.2.0 dated 2012-03-12 and 0.3.0 dated 2012-07-10

 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/CMakeLists.txt                                                |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Core/CMakeLists.txt                                       |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/CMakeLists.txt                              |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt                     |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Geometry/CMakeLists.txt                                   |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Geometry/arch/CMakeLists.txt                              |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/Householder/CMakeLists.txt                                |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/CMakeLists.txt                     |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/OrderingMethods/CMakeLists.txt                            |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/PardisoSupport/CMakeLists.txt                             |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/SVD/CMakeLists.txt                                        |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/SparseCholesky/CMakeLists.txt                             |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/SparseCore/CMakeLists.txt                                 |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/StlSupport/CMakeLists.txt                                 |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/SuperLUSupport/CMakeLists.txt                             |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/UmfPackSupport/CMakeLists.txt                             |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/misc/CMakeLists.txt                                       |only
 RcppEigen-0.2.0/RcppEigen/inst/include/Eigen/src/plugins/CMakeLists.txt                                    |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/AutoDiff/CMakeLists.txt                       |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/BVH/CMakeLists.txt                            |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/IterativeSolvers/CMakeLists.txt               |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/KroneckerProduct/CMakeLists.txt               |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/CMakeLists.txt                |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/NonLinearOptimization/CMakeLists.txt          |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/NumericalDiff/CMakeLists.txt                  |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/Polynomials/CMakeLists.txt                    |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/Skyline/CMakeLists.txt                        |only
 RcppEigen-0.2.0/RcppEigen/inst/include/unsupported/Eigen/src/Splines/CMakeLists.txt                        |only
 RcppEigen-0.3.0/RcppEigen/ChangeLog                                                                        |    5 
 RcppEigen-0.3.0/RcppEigen/DESCRIPTION                                                                      |   17 
 RcppEigen-0.3.0/RcppEigen/MD5                                                                              |  613 ++++------
 RcppEigen-0.3.0/RcppEigen/NEWS                                                                             |   31 
 RcppEigen-0.3.0/RcppEigen/NEWS.org                                                                         |   19 
 RcppEigen-0.3.0/RcppEigen/inst/doc/RcppEigen-intro-nojss.Rnw                                               |   49 
 RcppEigen-0.3.0/RcppEigen/inst/doc/RcppEigen-intro-nojss.pdf                                               |binary
 RcppEigen-0.3.0/RcppEigen/inst/doc/code.R                                                                  |   21 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Cholesky                                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/CholmodSupport                                                |   19 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Core                                                          |   10 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Eigen2Support                                                 |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Eigenvalues                                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Geometry                                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Householder                                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/IterativeLinearSolvers                                        |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Jacobi                                                        |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/LU                                                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/LeastSquares                                                  |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/OrderingMethods                                               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/PaStiXSupport                                                 |only
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/PardisoSupport                                                |   10 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/QR                                                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/SVD                                                           |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/Sparse                                                        |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/SparseCholesky                                                |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/SparseCore                                                    |    9 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/SuperLUSupport                                                |   16 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/UmfPackSupport                                                |   14 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Cholesky/LDLT.h                                           |   14 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Cholesky/LLT.h                                            |   15 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Cholesky/LLT_MKL.h                                        |    8 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/CholmodSupport/CholmodSupport.h                           |  302 +++-
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Array.h                                              |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/ArrayBase.h                                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/ArrayWrapper.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Assign.h                                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Assign_MKL.h                                         |   11 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/BandMatrix.h                                         |    5 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Block.h                                              |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/BooleanRedux.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/CommaInitializer.h                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/CwiseBinaryOp.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/CwiseNullaryOp.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/CwiseUnaryOp.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/CwiseUnaryView.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/DenseBase.h                                          |    8 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/DenseCoeffsBase.h                                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/DenseStorage.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Diagonal.h                                           |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/DiagonalMatrix.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/DiagonalProduct.h                                    |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Dot.h                                                |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/EigenBase.h                                          |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Flagged.h                                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/ForceAlignedAccess.h                                 |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Functors.h                                           |   34 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Fuzzy.h                                              |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/GeneralProduct.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/GenericPacketMath.h                                  |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/IO.h                                                 |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Map.h                                                |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/MapBase.h                                            |    2 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/MathFunctions.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Matrix.h                                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/MatrixBase.h                                         |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/NestByValue.h                                        |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/NoAlias.h                                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/NumTraits.h                                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/PermutationMatrix.h                                  |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/PlainObjectBase.h                                    |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/ProductBase.h                                        |    9 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Random.h                                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Redux.h                                              |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Replicate.h                                          |   15 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/ReturnByValue.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Reverse.h                                            |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Select.h                                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/SelfAdjointView.h                                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/SelfCwiseBinaryOp.h                                  |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/SolveTriangular.h                                    |   16 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/StableNorm.h                                         |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Stride.h                                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Swap.h                                               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Transpose.h                                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Transpositions.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/TriangularMatrix.h                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/VectorBlock.h                                        |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/VectorwiseOp.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/Visitor.h                                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/AltiVec/Complex.h                               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/AltiVec/PacketMath.h                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/NEON/Complex.h                                  |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/NEON/PacketMath.h                               |    7 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/SSE/Complex.h                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/SSE/MathFunctions.h                             |    8 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/arch/SSE/PacketMath.h                                |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/CoeffBasedProduct.h                         |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h                   |   15 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrix.h                       |   18 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_MKL.h         |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrix_MKL.h                   |   10 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixVector.h                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixVector_MKL.h                   |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/Parallelizer.h                              |   22 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_MKL.h               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h                   |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointMatrixVector_MKL.h               |    8 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointProduct.h                        |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h                    |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularMatrixMatrix_MKL.h                |   12 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularMatrixVector.h                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularMatrixVector_MKL.h                |   16 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularSolverMatrix.h                    |   57 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularSolverMatrix_MKL.h                |    8 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/products/TriangularSolverVector.h                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/BlasUtil.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/Constants.h                                     |   35 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/ForwardDeclarations.h                           |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/Macros.h                                        |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/Memory.h                                        |   19 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/Meta.h                                          |   19 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/StaticAssert.h                                  |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Core/util/XprHelper.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Block.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Cwise.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/CwiseOperators.h                            |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/AlignedBox.h                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/AngleAxis.h                        |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Hyperplane.h                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h                 |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Quaternion.h                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Rotation2D.h                       |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/RotationBase.h                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Scaling.h                          |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Transform.h                        |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Geometry/Translation.h                      |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/LU.h                                        |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Lazy.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/LeastSquares.h                              |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/MathFunctions.h                             |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Memory.h                                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Meta.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/Minor.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/QR.h                                        |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/SVD.h                                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/TriangularSolver.h                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigen2Support/VectorBlock.h                               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/ComplexSchur.h                                |    5 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/ComplexSchur_MKL.h                            |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/EigenSolver.h                                 |    5 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h           |    5 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h                     |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h                       |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/RealSchur.h                                   |   65 -
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/RealSchur_MKL.h                               |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h                      |    6 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_MKL.h                  |    5 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h                          |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/AlignedBox.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/AngleAxis.h                                      |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/EulerAngles.h                                    |    3 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/Homogeneous.h                                    |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/Hyperplane.h                                     |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/OrthoMethods.h                                   |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/ParametrizedLine.h                               |    4 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/Quaternion.h                                     |   28 
 RcppEigen-0.3.0/RcppEigen/inst/include/Eigen/src/Geometry/Rotation2D.h                                     |    4 
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Package RandomFields updated to version 2.0.57 with previous version 2.0.56 dated 2012-07-06

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging
Author: Martin Schlather
Maintainer: Martin Schlather

Diff between RandomFields versions 2.0.56 dated 2012-07-06 and 2.0.57 dated 2012-07-10

 DESCRIPTION |    6 +++---
 MD5         |    4 ++--
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New package hierNet with initial version 1.0
Package: hierNet
Title: A Lasso for Hierarchical Interactions
Version: 1.0
Author: Jacob Bien and Rob Tibshirani
Description: Fits sparse interaction models for continuous and binary responses subject to the strong (or weak) hierarchy restriction that an interaction between two variables only be included if both (or at least one of) the variables is included as a main effect. For more details, see Bien, J., Taylor, J., Tibshirani, R., (2012) "A Lasso for Hierarchical Interactions" submitted.
Maintainer: Jacob Bien
License: GPL-2
URL:
Packaged: 2012-07-10 07:45:52 UTC; jbien
Repository: CRAN
Date/Publication: 2012-07-10 19:56:44

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Package tikzDevice (with last version 0.6.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-11-16 0.6.2
2011-04-15 0.6.1
2011-04-13 0.6.0
2010-12-06 0.5.3
2010-10-15 0.5.2
2010-10-12 0.5.1
2010-08-10 0.5.0
2009-09-29 0.4.8
2009-09-12 0.4.7

Permanent link

Package HSROC updated to version 2.1.1 with previous version 2.1.0 dated 2012-07-03

Title: Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
Description: This package implements a model for joint meta-analysis of sensitivity and specificity of the diagnostic test under evaluation, while taking into account the possibly imperfect sensitivity and specificity of the reference test. This hierarchical model accounts for both within and between study variability. Estimation is carried out using a Bayesian approach, implemented via a Gibbs sampler. The model can be applied in situations where more than one reference test is used in the selected studies.
Author: Ian Schiller and Nandini Dendukuri
Maintainer:

Diff between HSROC versions 2.1.0 dated 2012-07-03 and 2.1.1 dated 2012-07-10

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New package DivMelt with initial version 1.0.0
Package: DivMelt
Type: Package
Title: Diversity Melting Assay Analysis package
Version: 1.0.0
Author: David Swan
Maintainer: David Swan
Description: This package has tools for analyzing Diversity Assay fluorescence files to generate melting scores, plots and statistics
License: Artistic-2.0
Depends: R(>= 2.12.0),tcltk,glmnet
Imports:
biocViews:
URL:
Packaged: 2012-07-09 16:30:56 UTC; dswan
Repository: CRAN
Date/Publication: 2012-07-10 16:25:45

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Package VBLPCM updated to version 2.1 with previous version 2.0 dated 2012-02-10

Title: Variational Bayes Latent Position Cluster Model for networks.
Description: A package to fit and simulate latent position and cluster models for statistical networks using a Variational Bayes approximation.
Author: Michael Salter-Townshend
Maintainer: Michael Salter-Townshend

Diff between VBLPCM versions 2.0 dated 2012-02-10 and 2.1 dated 2012-07-10

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New package sudokuplus with initial version 1.0
Package: sudokuplus
Type: Package
Title: Sudoku Puzzle (9*9 12*12 16*16) Generator and Solver
Version: 1.0
Date: 2012-06-30
Author: Zhengmairuo Gan & Yuzhen Hua & Maosheng Zhang & Caiyan Lai
Maintainer: Zhengmairuo Gan
Description: Generates, plays, and solves Sudoku puzzles which can be classic or monster.The GUI playsudoku() needs package tkrplot if you are not on Windows.
License: GPL (>= 2)
Depends: sudoku, tkrplot
Packaged: 2012-07-10 12:11:33 UTC; BOXIANWEI
Repository: CRAN
Date/Publication: 2012-07-10 13:51:28

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Package SpatialExtremes updated to version 1.8-5 with previous version 1.8-1 dated 2011-07-05

Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial extremes modelling.
Author: Mathieu Ribatet
Maintainer: Mathieu Ribatet

Diff between SpatialExtremes versions 1.8-1 dated 2011-07-05 and 1.8-5 dated 2012-07-10

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 SpatialExtremes-1.8-5/SpatialExtremes/src/header.h                      |    8 
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 SpatialExtremes-1.8-5/SpatialExtremes/src/simBrownResnick.c             |  232 +++++-----
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Package MortalitySmooth updated to version 2.3 with previous version 2.2 dated 2012-02-06

Title: Smoothing and forecasting Poisson counts with P-splines
Description: Smoothing one- and two-dimensional Poisson counts with P-splines specifically tailored to mortality data. Extra-Poisson variation can be accounted as well as forecasting. Collection of mortality data and a specific function for selecting those data by country, sex, age and years.
Author: Carlo G Camarda
Maintainer: Carlo G Camarda

Diff between MortalitySmooth versions 2.2 dated 2012-02-06 and 2.3 dated 2012-07-10

 DESCRIPTION                    |    8 ++++----
 MD5                            |   33 +++++++++++++++++----------------
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 man/selectHMDdata.Rd           |    6 ++++++
 18 files changed, 116 insertions(+), 59 deletions(-)

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Package BioMark updated to version 0.4.0 with previous version 0.3.3 dated 2011-11-29

Title: Find biomarkers in two-class discrimination problems
Description: The package provides biomarker selection for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches are provided, one based on the stability of model coefficients under perturbation, and the other on higher criticism.
Author: Ron Wehrens, Pietro Franceschi
Maintainer: Ron Wehrens

Diff between BioMark versions 0.3.3 dated 2011-11-29 and 0.4.0 dated 2012-07-10

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Package mlbench updated to version 2.1-1 with previous version 2.1-0 dated 2010-10-08

Title: Machine Learning Benchmark Problems
Description: A collection of artificial and real-world machine learning benchmark problems, including, e.g., several data sets from the UCI repository.
Author: Friedrich Leisch and Evgenia Dimitriadou.
Maintainer: Friedrich Leisch

Diff between mlbench versions 2.1-0 dated 2010-10-08 and 2.1-1 dated 2012-07-10

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 5 files changed, 10 insertions(+), 5 deletions(-)

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Package flexclust updated to version 1.3-3 with previous version 1.3-2 dated 2011-08-11

Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for k-centroids cluster analysis supporting arbitrary distance measures and centroid computation. Further cluster methods include hard competitive learning, neural gas, and QT clustering. There are numerous visualization methods for cluster results (neighborhood graphs, convex cluster hulls, barcharts of centroids, ...), and bootstrap methods for the analysis of cluster stability.
Author: Friedrich Leisch [aut, cre], Evgenia Dimitriadou [ctb]
Maintainer: Friedrich Leisch

Diff between flexclust versions 1.3-2 dated 2011-08-11 and 1.3-3 dated 2012-07-10

 DESCRIPTION                   |   22 ++--
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 24 files changed, 229 insertions(+), 201 deletions(-)

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Package pgfSweave (with last version 1.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-04-02 1.3.0
2011-04-06 1.2.1
2011-03-29 1.1.4
2011-01-19 1.1.3
2011-01-03 1.1.2
2010-12-04 1.1.1
2010-12-02 1.1.0
2010-09-21 1.0.9
2010-08-10 1.0.6
2010-04-12 1.0.5
2010-01-04 1.0.3
2009-12-04 1.0.1

Permanent link

Package treemap updated to version 1.1-1 with previous version 1.0-4 dated 2012-04-05

Title: Treemap visualization
Description: A treemap is a space-filling visualization of hierarchical structures. With this package different kind of treemaps can be generated, such as comparison treemaps and density treemaps. Small multiples are also supported.
Author: Martijn Tennekes
Maintainer: Martijn Tennekes

Diff between treemap versions 1.0-4 dated 2012-04-05 and 1.1-1 dated 2012-07-10

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Package xgrid updated to version 1.0-1 with previous version 0.2-5 dated 2012-04-08

Title: Access Apple Xgrid using R
Description: Functions to distribute and collate results from simulation studies and other computationally expensive tasks run on Apple Xgrid clusters
Author: Nicholas Horton , Sarah Anoke
Maintainer: Nicholas Horton

Diff between xgrid versions 0.2-5 dated 2012-04-08 and 1.0-1 dated 2012-07-10

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Package tnet updated to version 3.0.7 with previous version 3.0.6 dated 2012-06-22

Title: tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
Description: R package for analyzing weighted, two-mode, and longitudinal networks.
Author: Tore Opsahl
Maintainer: Tore Opsahl

Diff between tnet versions 3.0.6 dated 2012-06-22 and 3.0.7 dated 2012-07-10

 ChangeLog            |   12 +++++++++++-
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 R/distance_w.R       |   18 +++++-------------
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 R/tnet_igraph.R      |   10 +++++-----
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 9 files changed, 54 insertions(+), 70 deletions(-)

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New package Segmentor3IsBack with initial version 1.1
Package: Segmentor3IsBack
Version: 1.1
Date: 2012-05-08
Title: A Fast Segmentation Algorithm
Author: Alice Cleynen, Guillem Rigaill, Michel Koskas
Maintainer: Alice Cleynen
Depends: R (>= 2.0.0)
Description: This package performs a fast exact segmentation on data and allows for use of various cost functions
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: segmentor3isbac
Repository/R-Forge/Revision: 11
Packaged: 2012-07-09 18:27:28 UTC; rforge
Date/Publication: 2012-07-10 05:46:12

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Package dlmodeler updated to version 1.2-0 with previous version 1.1-0 dated 2011-02-14

Title: Generalized Dynamic Linear Modeler
Description: dlmodeler is a set of user-friendly functions to simplify the state-space modelling, fitting, analysis and forecasting of Generalized Dynamic Linear Models (DLMs). It includes functions to name and extract individual components of a DLM, build classical seasonal time-series models (monthly, quarterly, yearly, etc. with calendar adjustments) and provides a unified interface compatible with other state-space packages including: dlm, FKF and KFAS.
Author: Cyrille Szymanski
Maintainer: Cyrille Szymanski

Diff between dlmodeler versions 1.1-0 dated 2011-02-14 and 1.2-0 dated 2012-07-10

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 10 files changed, 57 insertions(+), 36 deletions(-)

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New package mvtmeta with initial version 1.0
Package: mvtmeta
Type: Package
Title: Multivariate meta-analysis
Version: 1.0
Date: 2012-07-09
Depends: gtools
Author: Han Chen
Maintainer: Han Chen
Description: This package contains functions to run fixed effects or random effects multivariate meta-analysis.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2012-07-10 03:41:41 UTC; hanchen
Repository: CRAN
Date/Publication: 2012-07-10 05:51:06

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Package CORElearn updated to version 0.9.40 with previous version 0.9.39 dated 2012-01-28

Title: CORElearn - classification, regression, feature evaluation and ordinal evaluation
Description: CORElearn is machine learning suite ported to R from standalone C++ package. It contains several model learning techniques in classification and regression, for example classification and regression trees with optional constructive induction and models in the leafs, random forests, kNN, naive Bayes, and locally weighted regression. It is especially strong in feature evaluation algorithms where it contains several variants of Relief algorithm and many impurity based attribute evaluation functions, e.g., Gini, information gain, MDL, DKM, ... Its additional strength is ordEval algorithm and its visualization used for ordinal features and class. Several algorithms support parallel multithreaded execution via OpenMP. Windows binary versions supporting multithreading are available on package website, as CRAN uses different toolchain. The top level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja , Petr Savicky
Maintainer: Marko Robnik-Sikonja

Diff between CORElearn versions 0.9.39 dated 2012-01-28 and 0.9.40 dated 2012-07-10

 ChangeLog         |    1 
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 R/rfVisualize.R   |    1 
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 17 files changed, 179 insertions(+), 34 deletions(-)

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