Title: Selecting variable subsets
Diff between subselect versions 0.12-0 dated 2012-07-11 and 0.12-1 dated 2012-07-13
Description: A collection of functions which (i) assess the quality of
variable subsets as surrogates for a full data set, in either
an exploratory data analysis or in the context of a
multivariate linear model, and (ii) search for subsets which
are optimal under various criteria.
Author: Jorge Orestes Cerdeira
Maintainer: Jorge Cadima
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
inst/CHANGELOG | 5 +++++
inst/doc/subselect.pdf |binary
src/Sscma.cpp | 6 +-----
5 files changed, 14 insertions(+), 13 deletions(-)
Title: Multivariate Autoregressive State-Space Modeling
Diff between MARSS versions 2.9 dated 2012-05-30 and 3.1 dated 2012-07-13
Description: The MARSS package provides maximum-likelihood parameter
estimation for constrained and unconstrained linear
multivariate autoregressive state-space (MARSS) models fit to
multivariate time-series data. Fitting is primarily via an
Expectation-Maximization (EM) algorithm, although fitting via
the BFGS algorithm (using the optim function) is also provided.
MARSS models are a class of dynamic linear model (DLM) and
vector autoregressive model (VAR) model. Functions are
provided for parametric and innovations bootstrapping, Kalman
filtering and smoothing, bootstrap model selection criteria
(AICb), confidences intervals via the hessian approximation and
via bootstrapping and calculation of auxilliary residuals for
detecting outliers and shocks. The user guide shows examples
of using MARSS for parameter estimation for a variety of
applications, model selection, dynamic factor analysis, outlier
and shock detection, and addition of covariates. Type
RShowDoc("UserGuide", package="MARSS") at the R command line to
open the MARSS user guide. Online workshops (lecture material)
at http://faculty.washington.edu/eeholmes/workshops.shtml
Author: Eli Holmes, Eric Ward, and Kellie Wills, NOAA, Seattle, USA
Maintainer: Eli Holmes
MARSS-2.9/MARSS/R/MARSSLLprofile.R |only
MARSS-2.9/MARSS/R/MARSScheckdims.R |only
MARSS-2.9/MARSS/R/MARSScheckpar.R |only
MARSS-2.9/MARSS/R/MARSSkfas.r |only
MARSS-2.9/MARSS/R/MARSSoptions.R |only
MARSS-2.9/MARSS/R/as_marssm.R |only
MARSS-2.9/MARSS/R/checkPopWrap.R |only
MARSS-2.9/MARSS/R/marssm.R |only
MARSS-2.9/MARSS/R/popWrap.R |only
MARSS-2.9/MARSS/man/MARSSLLprofile.Rd |only
MARSS-2.9/MARSS/man/MARSScheckdims.Rd |only
MARSS-2.9/MARSS/man/MARSSoptions.Rd |only
MARSS-2.9/MARSS/man/checkPopWrap.Rd |only
MARSS-2.9/MARSS/man/marssm.Rd |only
MARSS-2.9/MARSS/man/popWrap-class.Rd |only
MARSS-2.9/MARSS/man/popWrap.Rd |only
MARSS-3.1/MARSS/DESCRIPTION | 8
MARSS-3.1/MARSS/MD5 | 168 +-
MARSS-3.1/MARSS/NAMESPACE | 12
MARSS-3.1/MARSS/NEWS | 80
MARSS-3.1/MARSS/R/CSEGriskfigure.R | 16
MARSS-3.1/MARSS/R/MARSS.R | 117 -
MARSS-3.1/MARSS/R/MARSS_dfa.r |only
MARSS-3.1/MARSS/R/MARSS_marxss.R |only
MARSS-3.1/MARSS/R/MARSSaic.R | 83 -
MARSS-3.1/MARSS/R/MARSSapplynames.R | 72
MARSS-3.1/MARSS/R/MARSSboot.R | 17
MARSS-3.1/MARSS/R/MARSShatyt.r | 83 -
MARSS-3.1/MARSS/R/MARSShessian.R | 13
MARSS-3.1/MARSS/R/MARSSinfo.R |only
MARSS-3.1/MARSS/R/MARSSinits.R | 117 -
MARSS-3.1/MARSS/R/MARSSinnovationsboot.R | 39
MARSS-3.1/MARSS/R/MARSSkem.r | 1340 +++++++++-------
MARSS-3.1/MARSS/R/MARSSkemcheck.r | 337 +++-
MARSS-3.1/MARSS/R/MARSSkf.R | 388 ++--
MARSS-3.1/MARSS/R/MARSSmcinit.R | 74
MARSS-3.1/MARSS/R/MARSSoptim.r | 112 -
MARSS-3.1/MARSS/R/MARSSparamCIs.R | 87 -
MARSS-3.1/MARSS/R/MARSSresids.R | 19
MARSS-3.1/MARSS/R/MARSSsettings.R | 81 -
MARSS-3.1/MARSS/R/MARSSsimulate.R | 141 +
MARSS-3.1/MARSS/R/MARSSvectorizeparam.R | 75
MARSS-3.1/MARSS/R/checkMARSSInputs.r |only
MARSS-3.1/MARSS/R/checkModelList.r |only
MARSS-3.1/MARSS/R/describe_marssm.R | 115 -
MARSS-3.1/MARSS/R/diaghelpers.r | 414 ++++-
MARSS-3.1/MARSS/R/is_marssMLE.r | 147 +
MARSS-3.1/MARSS/R/is_marssm.R | 288 ++-
MARSS-3.1/MARSS/R/print_marssMLE.r | 130 +
MARSS-3.1/MARSS/R/print_marssm.R | 8
MARSS-3.1/MARSS/R/summary_marssm.R | 53
MARSS-3.1/MARSS/data/ivesDataByWeek.rda |binary
MARSS-3.1/MARSS/inst/CITATION |only
MARSS-3.1/MARSS/inst/doc/Case_study_2.R | 15
MARSS-3.1/MARSS/inst/doc/Case_study_3.R | 6
MARSS-3.1/MARSS/inst/doc/Case_study_4.R | 176 +-
MARSS-3.1/MARSS/inst/doc/Case_study_5.R | 2
MARSS-3.1/MARSS/inst/doc/Case_study_6.R | 23
MARSS-3.1/MARSS/inst/doc/Case_study_7.R | 176 +-
MARSS-3.1/MARSS/inst/doc/Case_study_8.R | 114 +
MARSS-3.1/MARSS/inst/doc/EMDerivation.Rnw | 2174 ++++++++++++++++-----------
MARSS-3.1/MARSS/inst/doc/EMDerivation.pdf |binary
MARSS-3.1/MARSS/inst/doc/Manual.bib | 104 +
MARSS-3.1/MARSS/inst/doc/Manual.pdf |binary
MARSS-3.1/MARSS/inst/doc/Quick_Start.Rnw | 179 +-
MARSS-3.1/MARSS/inst/doc/Quick_Start.pdf |binary
MARSS-3.1/MARSS/inst/doc/README_vers_3.0.pdf |only
MARSS-3.1/MARSS/inst/doc/README_vers_3.0.rnw |only
MARSS-3.1/MARSS/inst/doc/UserGuide.pdf |binary
MARSS-3.1/MARSS/man/CSEGriskfigure.Rd | 3
MARSS-3.1/MARSS/man/MARSS-package.Rd | 7
MARSS-3.1/MARSS/man/MARSS.Rd | 152 -
MARSS-3.1/MARSS/man/MARSS.dfa.Rd |only
MARSS-3.1/MARSS/man/MARSS.marxss.Rd |only
MARSS-3.1/MARSS/man/MARSSaic.Rd | 4
MARSS-3.1/MARSS/man/MARSSapplynames.Rd | 16
MARSS-3.1/MARSS/man/MARSSboot.Rd | 22
MARSS-3.1/MARSS/man/MARSShatyt.Rd | 12
MARSS-3.1/MARSS/man/MARSShessian.Rd | 8
MARSS-3.1/MARSS/man/MARSSinfo.Rd |only
MARSS-3.1/MARSS/man/MARSSinits.Rd | 5
MARSS-3.1/MARSS/man/MARSSinnovationsboot.Rd | 6
MARSS-3.1/MARSS/man/MARSSkem.Rd | 39
MARSS-3.1/MARSS/man/MARSSkemcheck.Rd | 8
MARSS-3.1/MARSS/man/MARSSkf.Rd | 31
MARSS-3.1/MARSS/man/MARSSmcinit.Rd | 7
MARSS-3.1/MARSS/man/MARSSoptim.Rd | 17
MARSS-3.1/MARSS/man/MARSSparamCIs.Rd | 7
MARSS-3.1/MARSS/man/MARSSresids.Rd | 4
MARSS-3.1/MARSS/man/MARSSsimulate.Rd | 13
MARSS-3.1/MARSS/man/MARSSvectorizeparam.Rd | 2
MARSS-3.1/MARSS/man/allowed.rd | 5
MARSS-3.1/MARSS/man/checkMARSSInputs.Rd |only
MARSS-3.1/MARSS/man/checkModelList.Rd |only
MARSS-3.1/MARSS/man/graywhales.Rd | 17
MARSS-3.1/MARSS/man/is.blockdiag.Rd | 61
MARSS-3.1/MARSS/man/is.marssMLE.Rd | 3
MARSS-3.1/MARSS/man/is.marssm.Rd |only
MARSS-3.1/MARSS/man/parmat.Rd |only
MARSS-3.1/MARSS/man/plankton.Rd | 6
MARSS-3.1/MARSS/man/print.marssMLE.rd |only
101 files changed, 4760 insertions(+), 3298 deletions(-)
Title: Latin Hypercube Samples
Diff between lhs versions 0.8 dated 2012-07-11 and 0.10 dated 2012-07-13
Description: This package provides a number of methods for creating and
augmenting Latin Hypercube Samples
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell
ChangeLog | 8 ++
DESCRIPTION | 10 +--
MD5 | 20 +++---
inst/doc/augmentLHS_Example.pdf |binary
src/defines.h | 11 +++
src/improvedLHS_R.cpp | 30 +++++-----
src/maximinLHS_R.cpp | 30 +++++-----
src/optSeededLHS_R.cpp | 50 ++++++++--------
src/optimumLHS_R.cpp | 50 ++++++++--------
src/simpleMatrix.h | 5 +
src/utilityLHS_R.h | 118 ++++++++++++++++++++++++----------------
11 files changed, 189 insertions(+), 143 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Diff between Rmpfr versions 0.4-8 dated 2012-05-23 and 0.5-0 dated 2012-07-13
Description: Rmpfr provides S4 classes and methods for arithmetic
including transcendental ("special") functions for arbitrary
precision floating point numbers. To this end, it interfaces to
the LGPL'ed MPFR (Multiple Precision Floating-Point Reliable)
Library which itself is based on the GMP (GNU Multiple
Precision) Library.
Author: Martin Maechler
Maintainer: Martin Maechler
.Rinstignore |only
ChangeLog | 16 +++++++++++++
DESCRIPTION | 10 ++++----
Done | 8 ++++++
MD5 | 54 +++++++++++++++++++++++++--------------------
NAMESPACE | 6 +++++
R/AllClasses.R | 18 +++++++++++++++
R/Math.R | 8 ++++--
R/array.R | 4 +--
R/as.R | 24 ++++++++++++++++----
R/gmp-convert.R | 30 ++++++++++++++++---------
R/hjk.R |only
R/mpfr.R | 32 +++++++++++++++++---------
R/optimizers.R |only
TODO | 29 ++++++++++++------------
demo |only
inst/doc/Makefile |only
inst/doc/Rmpfr-pkg.Rnw | 25 +-------------------
inst/doc/Rmpfr-pkg.pdf |binary
inst/doc/log1mexp-note.pdf |binary
man/Mnumber-class.Rd | 18 +++++++++++++--
man/gmp-conversions.Rd | 16 +++++++++----
man/hjkMpfr.Rd |only
man/mpfr-class.Rd | 7 +++++
man/mpfr.Rd | 18 +++++++++++++--
man/optimizeR.Rd |only
man/pmax.Rd | 8 +++---
man/str.mpfr.Rd |only
man/sumBinomMpfr.Rd | 9 +++++--
man/utils.Rd | 11 +++------
src/convert.c | 40 ++++++++++++++++++---------------
tests/create.R | 3 +-
32 files changed, 258 insertions(+), 136 deletions(-)
Title: Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
Diff between LEAPFrOG versions 1.0.4 dated 2012-05-02 and 1.0.5 dated 2012-07-13
Description: Contains LEAPFrOG Gradient Optimisation and Expectation
Maximisation functions for inferring parental admixture
proportions from an offspring with SNP genotypes.
Author: Daniel JM Crouch & Michael E Weale
Maintainer: Daniel JM Crouch
DESCRIPTION | 6 +++---
LEAPFrOG.zip |binary
MD5 | 6 +++---
R/LEAPFrOG.R | 3 ++-
4 files changed, 8 insertions(+), 7 deletions(-)
Title: State Space Models in R
Diff between sspir versions 0.2.8 dated 2009-11-19 and 0.2.9 dated 2012-07-13
Description: A glm-like formula language to define dynamic generalized
linear models (state space models). Includes functions for
Kalman filtering and smoothing. Estimation of variance matrices
can be performed using the EM algorithm in case of Gaussian
models. Read help(sspir) to get started.
Author: Claus Dethlefsen, \enc{Søren}{Soren} Lundbye-Christensen and
Anette Luther Christensen
Maintainer: Claus Dethlefsen
sspir-0.2.8/sspir/data/kurit.R |only
sspir-0.2.8/sspir/data/mumps.R |only
sspir-0.2.8/sspir/data/mumps.txt |only
sspir-0.2.8/sspir/data/vandrivers.R |only
sspir-0.2.8/sspir/data/vandrivers.txt |only
sspir-0.2.9/sspir/DESCRIPTION | 17 +-
sspir-0.2.9/sspir/MD5 |only
sspir-0.2.9/sspir/NAMESPACE | 137 +++++++++++-----------
sspir-0.2.9/sspir/R/EMalgo.R | 160 ++++++++++++--------------
sspir-0.2.9/sspir/R/SS.R | 45 +++----
sspir-0.2.9/sspir/R/emalgo1.R |only
sspir-0.2.9/sspir/R/kfs.R | 187 ++++++++++++++++++++++++-------
sspir-0.2.9/sspir/R/ssm.R | 2
sspir-0.2.9/sspir/R/zzz.R | 48 +++----
sspir-0.2.9/sspir/data/kurit.rda |only
sspir-0.2.9/sspir/data/mumps.rda |only
sspir-0.2.9/sspir/data/mumps.txt.gz |only
sspir-0.2.9/sspir/data/vandrivers.rda |only
sspir-0.2.9/sspir/data/vandrivers.txt.gz |only
sspir-0.2.9/sspir/man/EMalgo.Rd | 145 ++++++++++++++++--------
sspir-0.2.9/sspir/man/Fkfilter.Rd |only
sspir-0.2.9/sspir/man/Fkfs.Rd |only
sspir-0.2.9/sspir/man/SS.Rd | 6
sspir-0.2.9/sspir/man/extended.Rd | 8 -
sspir-0.2.9/sspir/man/kfs.Rd | 2
sspir-0.2.9/sspir/man/simulate.Rd | 2
sspir-0.2.9/sspir/man/smoother.Rd | 2
sspir-0.2.9/sspir/man/sspir.Rd | 6
sspir-0.2.9/sspir/sspir-Ex.R |only
29 files changed, 465 insertions(+), 302 deletions(-)
Title: Multi-distance based k-Nearest Neighbors
Diff between knnGarden versions 1.0 dated 2012-05-30 and 1.0.1 dated 2012-07-13
Description: Multi-distance based k-Nearest Neighbors Classification
with K Threshold Value Check and Same K_i Problem Dealing,
Missing Observations Filling
Author: Boxian Wei & Fan Yang & Xinmiao Wang & Yanni Ge
Maintainer: Boxian Wei
DESCRIPTION | 11 ++++++-----
MD5 | 4 ++--
man/knnMCN.Rd | 2 +-
3 files changed, 9 insertions(+), 8 deletions(-)
Title: Distributions to be used for GAMLSS modelling.
Diff between gamlss.dist versions 4.1-1 dated 2012-02-15 and 4.1-5 dated 2012-07-13
Description: This package contains the distributions for GAMLSS
modelling.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 11 -
MD5 | 38 +++--
NAMESPACE | 22 +-
R/EGB2.R | 4
R/GB2.R | 4
R/GeneralisedPareto.R |only
R/LOGIT_NO.R |only
R/SN1.R |only
R/SN2.R |only
R/SST.R |only
R/TF2.R |only
R/genFamily.R |only
R/hazard.R |only
R/logNO2.R |only
R/make-link-gamlss-new.R | 8 -
man/BB.Rd | 2
man/EGB2.Rd | 4
man/GB2.Rd | 205 ++++++++++++++-------------
man/LNO.Rd | 264 +++++++++++++++++++---------------
man/LOGITNO.Rd |only
man/SICHEL.Rd | 2
man/SN1.Rd |only
man/SN2.Rd |only
man/ST1.Rd | 356 ++++++++++++++++++++++++-----------------------
man/TF.Rd | 167 +++++++++++-----------
man/gen.Family.Rd |only
man/hazardFun.Rd |only
27 files changed, 597 insertions(+), 490 deletions(-)
Title: Generalized Additive Models for Location Scale and Shape.
Diff between gamlss versions 4.1-5 dated 2012-04-23 and 4.1-7 dated 2012-07-13
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos
Maintainer: Mikis Stasinopoulos
DESCRIPTION | 10 +--
MD5 | 26 ++++----
R/HistDist2-12-11.R | 41 ++++++-------
R/SUMMARY.R | 10 ++-
R/fitDist.R | 8 +-
R/gamlssML.R | 156 ++++++++++++++++++++++++++------------------------
R/lms.r | 9 +-
inst/doc/NEWS.txt | 30 +++++++++
man/calibration.Rd | 2
man/cs.Rd | 7 --
man/fitDist.Rd | 8 +-
man/lms.Rd | 5 +
man/random.Rd | 2
man/summary.gamlss.Rd | 5 -
14 files changed, 181 insertions(+), 138 deletions(-)
Title: Continuous Lag Spatial Markov Chains
Diff between spMC versions 0.2.2 dated 2012-03-26 and 0.2.4 dated 2012-07-13
Description: The main goal of this package is to provide a set of
functions for 1) the stratum lengths analysis along a chosen
direction, 2) fast estimation of continuous lag spatial Markov
chains model parameters and probability computing (also for
large data sets), 3) transition probability maps and
transiograms drawing, 4) simulation methods for categorical
random fields.
Author: Luca Sartore
Maintainer: Luca Sartore
spMC-0.2.2/spMC/configure |only
spMC-0.2.2/spMC/configure.ac |only
spMC-0.2.2/spMC/src/Makevars.in |only
spMC-0.2.2/spMC/src/Makevars.win |only
spMC-0.2.4/spMC/DESCRIPTION | 10
spMC-0.2.4/spMC/MD5 | 34 --
spMC-0.2.4/spMC/R/ilstpfit.R | 4
spMC-0.2.4/spMC/R/image.multi.tpfit.R | 2
spMC-0.2.4/spMC/R/imgMultiTransiogram.R | 2
spMC-0.2.4/spMC/R/metpfit.R | 4
spMC-0.2.4/spMC/R/mlen.R | 3
spMC-0.2.4/spMC/R/multi.tpfit.R | 1
spMC-0.2.4/spMC/R/plot.transiogram.R | 7
spMC-0.2.4/spMC/R/setCores.R | 13
spMC-0.2.4/spMC/R/tpfit.R | 4
spMC-0.2.4/spMC/R/zzz.R | 4
spMC-0.2.4/spMC/cleanup | 4
spMC-0.2.4/spMC/man/spMC-package.Rd | 6
spMC-0.2.4/spMC/src/Makevars |only
spMC-0.2.4/spMC/src/spMC.c | 533 ++++++++++++++++++++++++++++----
spMC-0.2.4/spMC/src/spMC.h |only
21 files changed, 526 insertions(+), 105 deletions(-)
Title: Estimation techniques for the reliability estimate: Maximized
Lambda4
Diff between Lambda4 versions 1.0 dated 2012-04-05 and 2.0 dated 2012-07-13
Description: Currently the code features 2 new ways to calculate
reliability. Both are based on a combination of Cronbach's
alpha and Maximal-type reliability coefficients but use
different maximization procedures.
Author: Tyler Hunt
Maintainer:
Lambda4-1.0/Lambda4/R/lambda4.R |only
Lambda4-1.0/Lambda4/man/lambda4.Rd |only
Lambda4-2.0/Lambda4/DESCRIPTION | 14 ++++++++------
Lambda4-2.0/Lambda4/MD5 | 10 ++++++----
Lambda4-2.0/Lambda4/R/cov.lambda4.R |only
Lambda4-2.0/Lambda4/R/quant.lambda4.R |only
Lambda4-2.0/Lambda4/man/Lambda4-package.Rd | 29 +++++++++++++++++------------
Lambda4-2.0/Lambda4/man/cov.lambda4.Rd |only
Lambda4-2.0/Lambda4/man/quant.lambda4.Rd |only
9 files changed, 31 insertions(+), 22 deletions(-)
Title: Format R Code Automatically
Diff between formatR versions 0.5 dated 2012-06-22 and 0.6 dated 2012-07-13
Description: This package provides a function tidy.source() and
optionally a GUI (by gWidgets and preferably gWidgetsRGtk2) to
format R source code. Spaces and indent will be added to the
code automatically, and comments will be preserved under
certain conditions, so that R code will be more human-readable
and tidy.
Author: Yihui Xie
Maintainer: Yihui Xie
formatR-0.5/formatR/inst/doc/.install_extras |only
formatR-0.6/formatR/DESCRIPTION | 12 +-
formatR-0.6/formatR/MD5 | 24 ++---
formatR-0.6/formatR/NEWS | 38 ++++++++
formatR-0.6/formatR/R/eval.R | 10 +-
formatR-0.6/formatR/R/tidy.R | 120 ++++++++++++---------------
formatR-0.6/formatR/R/utils.R | 103 ++++++++++-------------
formatR-0.6/formatR/README.md | 13 --
formatR-0.6/formatR/inst/doc/formatR.Rnw | 52 +++++++----
formatR-0.6/formatR/inst/doc/formatR.bib | 29 ++----
formatR-0.6/formatR/inst/doc/formatR.lyx | 105 ++++++++++++++++++++---
formatR-0.6/formatR/inst/doc/formatR.pdf |binary
formatR-0.6/formatR/man/tidy.eval.Rd | 3
formatR-0.6/formatR/man/tidy.source.Rd | 29 +++---
14 files changed, 317 insertions(+), 221 deletions(-)
Title: CCMN and other noRMalizatioN methods for metabolomics data
Diff between crmn versions 0.0.14 dated 2010-01-14 and 0.0.19 dated 2012-07-13
Description: Implements the Cross-contribution Compensating Multiple
standard Normalization (CCMN) method and other normalization
algorithms.
Author: Henning Redestig
Maintainer: Henning Redestig
crmn-0.0.14/crmn/inst/doc/auto |only
crmn-0.0.19/crmn/DESCRIPTION | 13 +-
crmn-0.0.19/crmn/MD5 |only
crmn-0.0.19/crmn/NAMESPACE | 28 ++---
crmn-0.0.19/crmn/NEWS | 26 ++++-
crmn-0.0.19/crmn/R/generic.R | 2
crmn-0.0.19/crmn/R/misc.R | 17 ++-
crmn-0.0.19/crmn/R/norm.R | 149 +++++++++++++++++--------------
crmn-0.0.19/crmn/data/mix.rda |binary
crmn-0.0.19/crmn/inst/doc/crmn.pdf |binary
crmn-0.0.19/crmn/man/analytes.Rd | 34 ++++---
crmn-0.0.19/crmn/man/analytes_eset.Rd | 45 ++++++---
crmn-0.0.19/crmn/man/analytes_other.Rd | 41 +++++---
crmn-0.0.19/crmn/man/crmn.Rd | 34 +++----
crmn-0.0.19/crmn/man/dropunusedlevels.Rd | 23 +++-
crmn-0.0.19/crmn/man/makeX.Rd | 45 ++++++---
crmn-0.0.19/crmn/man/makeX_eset.Rd | 49 +++++++---
crmn-0.0.19/crmn/man/makeX_other.Rd | 42 ++++++--
crmn-0.0.19/crmn/man/method.Rd | 23 +++-
crmn-0.0.19/crmn/man/mexprs.Rd | 28 +++--
crmn-0.0.19/crmn/man/mexprs_bla.Rd | 9 +
crmn-0.0.19/crmn/man/mix.Rd | 32 ++++--
crmn-0.0.19/crmn/man/model.Rd | 23 +++-
crmn-0.0.19/crmn/man/nFit.Rd | 13 +-
crmn-0.0.19/crmn/man/normFit.Rd | 106 ++++++++++++++--------
crmn-0.0.19/crmn/man/normPred.Rd | 66 +++++++++----
crmn-0.0.19/crmn/man/normalize.Rd | 47 +++++++--
crmn-0.0.19/crmn/man/pcaMuffle.Rd | 30 ++++--
crmn-0.0.19/crmn/man/plot.nFit.Rd | 47 +++++++--
crmn-0.0.19/crmn/man/sFit.Rd | 23 +++-
crmn-0.0.19/crmn/man/set_mexprs.Rd | 36 +++++--
crmn-0.0.19/crmn/man/show.Rd | 26 +++--
crmn-0.0.19/crmn/man/show_nfit.Rd | 23 +++-
crmn-0.0.19/crmn/man/standards.Rd | 35 +++++--
crmn-0.0.19/crmn/man/standardsFit.Rd | 84 +++++++++++------
crmn-0.0.19/crmn/man/standardsPred.Rd | 67 +++++++++----
crmn-0.0.19/crmn/man/standards_eset.Rd | 43 ++++++--
crmn-0.0.19/crmn/man/standards_other.Rd | 41 ++++++--
crmn-0.0.19/crmn/man/weightnorm.Rd | 51 +++++++---
crmn-0.0.19/crmn/vignettes |only
40 files changed, 952 insertions(+), 449 deletions(-)
Title: A package for estimating age-specific survival from incomplete
capture-recapture/recovery data
Diff between BaSTA versions 1.2 dated 2012-03-19 and 1.3 dated 2012-07-13
Description: This package estimates survival and mortality with
covariates from capture-recapture/recovery data in a Bayesian
framework when many individuals are of unknown age. It includes
tools for data checking, model diagnostics and outputs such as
life-tables and plots.
Author: Fernando Colchero, Owen Jones, Maren Rebke
Maintainer: Fernando Colchero
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/basta.default.R | 26 ++++++++++++--------------
inst/doc/BaSTAoverview.Rnw | 1 -
man/BaSTA-package.Rd | 6 +++---
man/basta.Rd | 4 ++--
vignettes/BaSTAoverview.Rnw | 1 -
vignettes/Refs.bib | 2 ++
8 files changed, 30 insertions(+), 32 deletions(-)
Title: Convert Rd to roxygen documentation and utilities to improve
documentation
Diff between Rd2roxygen versions 1.0-7 dated 2011-11-21 and 1.1 dated 2012-07-13
Description: Functions to convert Rd to roxygen documentation. It can
parse an Rd file to a list, create the roxygen documentation
and update the original R script (e.g. the one containing the
definition of the function) accordingly. This package also
provides utilities which can help developers build packages
using roxygen more easily. The formatR package can be used to
reformat the R code in the examples sections so that the code
will be more readable.
Author: Hadley Wickham and Yihui Xie
Maintainer: Yihui Xie
Rd2roxygen-1.0-7/Rd2roxygen/README |only
Rd2roxygen-1.0-7/Rd2roxygen/vignettes |only
Rd2roxygen-1.1/Rd2roxygen/.Rinstignore |only
Rd2roxygen-1.1/Rd2roxygen/.gitignore | 1
Rd2roxygen-1.1/Rd2roxygen/DESCRIPTION | 32 -
Rd2roxygen-1.1/Rd2roxygen/MD5 | 39 -
Rd2roxygen-1.1/Rd2roxygen/NAMESPACE | 7
Rd2roxygen-1.1/Rd2roxygen/NEWS | 21
Rd2roxygen-1.1/Rd2roxygen/R/Rd2roxygen-package.R | 59 -
Rd2roxygen-1.1/Rd2roxygen/R/build.R |only
Rd2roxygen-1.1/Rd2roxygen/R/rd2roxygen.R | 297 ++++-----
Rd2roxygen-1.1/Rd2roxygen/R/utils.R | 213 -------
Rd2roxygen-1.1/Rd2roxygen/inst/doc/Makefile |only
Rd2roxygen-1.1/Rd2roxygen/inst/doc/Rd2roxygen.Rnw | 608 +-------------------
Rd2roxygen-1.1/Rd2roxygen/inst/doc/Rd2roxygen.bib | 37 -
Rd2roxygen-1.1/Rd2roxygen/inst/doc/Rd2roxygen.lyx | 77 +-
Rd2roxygen-1.1/Rd2roxygen/inst/doc/Rd2roxygen.pdf |binary
Rd2roxygen-1.1/Rd2roxygen/man/Rd2roxygen-package.Rd | 4
Rd2roxygen-1.1/Rd2roxygen/man/create_roxygen.Rd | 3
Rd2roxygen-1.1/Rd2roxygen/man/parse_and_save.Rd | 3
Rd2roxygen-1.1/Rd2roxygen/man/parse_file.Rd | 3
Rd2roxygen-1.1/Rd2roxygen/man/reformat_code.Rd | 3
Rd2roxygen-1.1/Rd2roxygen/man/roxygen_and_build.Rd | 10
Rd2roxygen-1.1/Rd2roxygen/readme.md |only
24 files changed, 397 insertions(+), 1020 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-08 1.1-0
2004-09-28 1.0-1