Title: Normalize NanoString miRNA and mRNA data
Diff between NanoStringNorm versions 1.1.8 dated 2012-07-16 and 1.1.9 dated 2012-07-16
More information about NanoStringNorm at CRAN
Description: A set of tools for normalizing, diagnostics and
visualization of Nanostring nCounter data
Author: Daryl M. Waggott
Maintainer: Daryl Waggott
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/probe.correction.factor.normalization.R | 11 +++++++++--
inst/doc/NanoStringNorm_Introduction.pdf |binary
4 files changed, 16 insertions(+), 9 deletions(-)
Permanent link
Title: Estimation of latent class mixed models, joint latent class
mixed models and mixed models for curvilinear outcomes
Diff between lcmm versions 1.5.2 dated 2012-04-16 and 1.5.6 dated 2012-07-16
Description: This package provides functions for the estimation of
various latent class mixed models, joint latent latent class
mixed models and mixed models for curvilinear outcomes using a
maximum likelihood method
Author: Cecile Proust-Lima, Amadou Diakite and Benoit Liquet
Maintainer:
DESCRIPTION | 12
MD5 | 69
NAMESPACE | 4
NEWS | 22
R/Contlcmm.R | 1032 ++++++--------
R/Jointlcmm.R | 2091 ++++++++++++++--------------
R/Ordlcmm.R | 1039 ++++++--------
R/epoce.R | 273 ++-
R/hlme.R | 187 +-
R/lcmm.R | 115 +
R/plot.predict.Jointlcmm.R | 519 +++----
R/plot.predict.hlme.R | 412 +++--
R/plot.predict.lcmm.R | 452 +++---
R/predictY.lcmm.R |only
R/print.Jointlcmm.R | 151 +-
R/print.hlme.R | 97 -
R/print.lcmm.R | 131 -
R/summary.Jointlcmm.R | 15
R/summary.hlme.R | 281 +--
R/summary.lcmm.R | 365 ++---
man/Jointlcmm.Rd | 7
man/epoce.Rd | 6
man/hlme.Rd | 7
man/lcmm-package.Rd | 10
man/lcmm.Rd | 14
man/plot.linkfunction.Rd | 3
man/plot.predict.Rd | 10
man/predictY.Rd |only
src/AOptim.f90 | 272 +--
src/Jointhet.f90 | 359 ++--
src/Makevars.in | 18
src/Makevars.win | 2
src/cvpl.f90 | 3254 ++++++++++++++++++++++-----------------------
src/hetmixCont.f90 | 313 ++--
src/hetmixOrd.f90 | 2
src/hetmixlin.f90 | 2
src/predictCont.f90 |only
37 files changed, 5959 insertions(+), 5587 deletions(-)
Title: L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Diff between lmomco versions 1.6.1 dated 2012-05-11 and 1.6.2 dated 2012-07-16
Description: The package implements the statistical theory of L-moments
in R including L-moment estimation, probability-weighted moment
estimation, parameter estimation for numerous familiar and
not-so-familiar distributions, and L-moment estimation for the
same distributions from the parameters. L-moments are derived
from the expectations of order statistics and are linear with
respect to the probability-weighted moments; choice of either
can be made by mathematical convenience. L-moments are directly
analogous to the well-known product moments; however, L-moments
have many advantages including unbiasedness, robustness, and
consistency with respect to the product moments. The method of
L-moments can out perform the method of maximum likelihood. The
lmomco package historically is oriented around canonical
FORTRAN algorithms of J.R.M. Hosking, and the nomenclature for
many of the functions parallels that of the Hosking library,
which later became available in the lmom package. However, vast
arrays of various extensions and curiosities are added by the
author to aid and expand the breadth of L-moment application.
Such extensions include venerable statistics as Sen weighted
mean, Gini mean difference, plotting positions, and conditional
probability adjustment. The plotting of L-moment ratio diagrams
is directly supported in this package. Computations of
L-moments for right-tail and left-tail censoring by known or
unknown censoring threshold and also by indicator variable also
are available. E.A.H. Elamir and A.H. Seheult have developed
the trimmed L-moments, which are implemented in this package,
and numerical integration of quantile functions is used to
dynamically compute trajectories of select TL-moment ratios for
the construction of TL-moment ratio diagrams. Robert Serfling
and Peng Xiao have extended L-moments into multivariate space;
the so-called sample L-comoments are implemented here and might
have considerable application in copula theory because they
measure asymmetric correlation and higher co-moments or
co-movements of variables. The package supports the following
distributions with moment type shown as "L" (L-moments) or "TL"
(trimmed L-moments) and additional support for right-tail
censoring ([RC]) include: Asymmetric Exponential Power (L),
Cauchy (TL), Exponential (L), Gamma (L), Generalized Extreme
Value (L), Generalized Lambda (L & TL), Generalized Logistic
(L), Generalized Normal (L), Generalized Pareto (L[RC] & TL),
Gumbel (L), Kappa (L), Kumaraswamy (L), Laplace (L), Normal
(L), 3-parameter log-Normal (L), Pearson Type III (L), Rayleigh
(L), Reverse Gumbel (L[RC]), Rice/Rician (L), Truncated
Exponential (L), Wakeby (L), and Weibull (L).
Author: William H. Asquith
Maintainer: William H. Asquith
ChangeLog | 27 +++++++
DESCRIPTION | 8 +-
MD5 | 37 +++++-----
R/cdfgum.R | 10 +-
R/gen.freq.curves.R | 39 +++++++++--
R/genci.R | 18 ++++-
R/pdfrevgum.R | 12 +--
R/qua2ci.R | 7 +-
inst/ERRATA_FOR_ISBN9781463508418.txt |only
man/cdfgum.Rd | 6 +
man/cdfrevgum.Rd | 10 ++
man/gen.freq.curves.Rd | 117 +++++++++++++++++++++++++++++++---
man/genci.Rd | 2
man/lmomgld.Rd | 5 +
man/parTLgld.Rd | 6 +
man/paraep4.Rd | 16 ++++
man/pdfgum.Rd | 6 +
man/pdfrevgum.Rd | 6 -
man/qua.ostat.Rd | 6 +
man/qua2ci.Rd | 7 +-
20 files changed, 279 insertions(+), 66 deletions(-)
More information about RcmdrPlugin.EACSPIR at CRAN
Permanent link
Title: A Fast Segmentation Algorithm
Diff between Segmentor3IsBack versions 1.1 dated 2012-07-10 and 1.2 dated 2012-07-16
More information about Segmentor3IsBack at CRAN
Description: This package performs a fast exact segmentation on data
and allows for use of various cost functions
Author: Alice Cleynen, Guillem Rigaill, Michel Koskas
Maintainer: Alice Cleynen
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
src/BinNegative.cpp | 2 +-
src/Poisson.cpp | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Permanent link
Title: Various Coefficients of Interrater Reliability and Agreement
Diff between irr versions 0.83 dated 2010-08-11 and 0.84 dated 2012-07-16
Description: Coefficients of Interrater Reliability and Agreement for
quantitative, ordinal and nominal data: ICC, Finn-Coefficient,
Robinson'A, Kendall's W, Cohen's Kappa, ...
Author: Matthias Gamer
Maintainer: Matthias Gamer
irr-0.83/irr/INDEX |only
irr-0.84/irr/CHANGES | 6 +
irr-0.84/irr/DESCRIPTION | 8 +-
irr-0.84/irr/MD5 |only
irr-0.84/irr/NAMESPACE |only
irr-0.84/irr/R/kappa2.R | 5 +
irr-0.84/irr/R/kripp.alpha.R | 129 ++++++++++++++++++++--------------------
irr-0.84/irr/data/anxiety.rda |binary
irr-0.84/irr/man/kappa2.Rd | 7 +-
irr-0.84/irr/man/kripp.alpha.Rd | 3
10 files changed, 84 insertions(+), 74 deletions(-)
Title: A community modeling foundation for Eco-Hydrology.
Diff between EcoHydRology versions 0.4.1 dated 2012-05-23 and 0.4.3 dated 2012-07-16
Description: This package provides a flexible foundation for
scientists, engineers, and policy makers to base teaching
exercises as well as for more applied use to model complex
eco-hydrological interactions.
Author: Fuka DR, Walter MT, Archibald JA, Steenhuis TS, and Easton ZM
Maintainer: Daniel Fuka
EcoHydRology-0.4.1/EcoHydRology/R/build_swat_basic.R |only
EcoHydRology-0.4.1/EcoHydRology/R/readSWAT.R |only
EcoHydRology-0.4.1/EcoHydRology/R/runSWAT2005.R |only
EcoHydRology-0.4.1/EcoHydRology/man/build_swat_basic.Rd |only
EcoHydRology-0.4.1/EcoHydRology/man/readSWAT.Rd |only
EcoHydRology-0.4.1/EcoHydRology/man/runSWAT2005.Rd |only
EcoHydRology-0.4.1/EcoHydRology/src |only
EcoHydRology-0.4.3/EcoHydRology/DESCRIPTION | 10
EcoHydRology-0.4.3/EcoHydRology/MD5 | 653 ----------
EcoHydRology-0.4.3/EcoHydRology/NAMESPACE | 3
EcoHydRology-0.4.3/EcoHydRology/R/AtmosphericEmissivity.R | 18
EcoHydRology-0.4.3/EcoHydRology/R/EstCloudiness.R | 26
EcoHydRology-0.4.3/EcoHydRology/R/alter_files.R | 1
EcoHydRology-0.4.3/EcoHydRology/R/get_cfsr_latlon.R |only
EcoHydRology-0.4.3/EcoHydRology/R/get_gsod_stn.R | 4
EcoHydRology-0.4.3/EcoHydRology/R/get_usgs_gage.R |only
EcoHydRology-0.4.3/EcoHydRology/R/swat_objective_function.R | 54
EcoHydRology-0.4.3/EcoHydRology/R/transmissivity.R | 46
EcoHydRology-0.4.3/EcoHydRology/man/AtmosphericEmissivity.Rd | 30
EcoHydRology-0.4.3/EcoHydRology/man/EcoHydRology-package.Rd | 4
EcoHydRology-0.4.3/EcoHydRology/man/EstCloudiness.Rd | 23
EcoHydRology-0.4.3/EcoHydRology/man/get_cfsr_latlon.Rd |only
EcoHydRology-0.4.3/EcoHydRology/man/get_usgs_gage.Rd |only
EcoHydRology-0.4.3/EcoHydRology/man/swat_objective_function.Rd | 55
EcoHydRology-0.4.3/EcoHydRology/man/transmissivity.Rd | 27
25 files changed, 196 insertions(+), 758 deletions(-)
Title: Multivariate likelihood ratio calculation and evaluation
Diff between comparison versions 0.4-0 dated 2012-04-17 and 1.0-0 dated 2012-07-16
Description: Functions for calculating and evaluating likelihood ratios
from uni/multivariate continuous observations
Author: David Lucy
Maintainer: David Lucy
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++++------
NAMESPACE | 2 +-
R/two.level.lindley.LR.r |only
R/two.level.normal.LR.r |only
data/glass.rda |binary
man/comparison-package.Rd | 6 ++++--
man/two.level.comparison.items.Rd | 6 ++++--
man/two.level.density.LR.Rd | 20 ++++++++++----------
man/two.level.lindley.LR.Rd |only
man/two.level.normal.LR.Rd |only
11 files changed, 33 insertions(+), 25 deletions(-)
Title: Redis client for R
Diff between rredis versions 1.6.6 dated 2012-05-15 and 1.6.7 dated 2012-07-16
Description: An R client for the Redis persistent key-value database
available from http://redis.io.
Author: B. W. Lewis
Maintainer: B. W. Lewis
DESCRIPTION | 8 ++++----
MD5 | 21 ++++++++++++---------
NEWS | 7 +++++++
R/allValCMD.R | 8 ++++----
R/controlCMD.R | 14 ++++++--------
R/hashCMD.R | 2 +-
R/listCMD.R | 7 ++++++-
R/redis-internal.R | 44 +++++++++++++++++++++++---------------------
R/scriptCMD.R |only
inst/doc/rredis.pdf |binary
man/redisBRPopLPush.Rd |only
man/redisConnect.Rd | 3 ++-
man/redisEval.Rd |only
13 files changed, 65 insertions(+), 49 deletions(-)
Title: Normalize NanoString miRNA and mRNA data
Diff between NanoStringNorm versions 1.1.6 dated 2012-03-20 and 1.1.8 dated 2012-07-16
More information about NanoStringNorm at CRAN
Description: A set of tools for normalizing, diagnostics and
visualization of Nanostring nCounter data
Author: Daryl M. Waggott
Maintainer: Daryl Waggott
DESCRIPTION | 8
MD5 | 40
R/NanoStringNorm.R | 15
R/Plot.NanoStringNorm.R | 4
R/norm.comp.R | 97 -
R/other.normalization.R | 13
R/other.normalization.zscore.R | 6
R/probe.correction.factor.normalization.R | 148 +
R/read.xls.RCC.R | 6
R/sample.content.normalization.R | 29
inst/doc/NanoStringNorm_Introduction.Rnw | 4
inst/doc/NanoStringNorm_Introduction.pdf |binary
inst/extdata/output_function_files/2011-11-04_NanoString_mRNA_TCDD_NSN_none.txt | 31
inst/extdata/output_function_files/2011-11-04_NanoString_mRNA_TCDD_NSN_random.txt | 227 +-
inst/extdata/output_function_files/2011-11-04_NanoString_mRNA_TCDD_quantile_Other_Normalization.txt | 288 ++-
inst/extdata/output_function_files/2011-11-04_NanoString_mRNA_TCDD_zscore_Other_Normalization.txt | 758 +++++-----
inst/unitTests/test_NanoStringNorm.R | 8
inst/unitTests/test_other.normalization.R | 16
man/NanoStringNorm.Rd | 28
man/norm.comp.Rd | 12
vignettes/NanoStringNorm_Introduction.Rnw | 4
21 files changed, 982 insertions(+), 760 deletions(-)
Permanent link
Title: Foreach parallel adapter for the rredis package
Diff between doRedis versions 1.0.4 dated 2011-06-03 and 1.0.5 dated 2012-07-16
Description: A Redis parallel backend for the %dopar% function
Author: B. W. Lewis
Maintainer: B. W. Lewis
CHANGES |only
DESCRIPTION | 12 ++++++------
MD5 |only
R/doRedis.R | 13 ++++++++++++-
R/redisWorker.R | 5 +++--
inst/doc/circle.pdf |binary
inst/doc/doRedis.Rnw | 10 +++++-----
inst/doc/doRedis.pdf |binary
man/setExport.Rd |only
man/startLocalWorkers.Rd | 2 +-
src/alive.c | 1 -
11 files changed, 27 insertions(+), 16 deletions(-)
Title: Unified access to various data sources
Diff between datamart versions 0.1.0 dated 2012-06-15 and 0.2.0 dated 2012-07-16
Description: Provides several S4 classes for querying web based data
sources like mediawiki, dbpedia and twitter.
Author: Karsten Weinert
Maintainer: Karsten Weinert
datamart-0.1.0/datamart/R/001_Xdata.R |only
datamart-0.1.0/datamart/R/045_evs2008.lvl2-data.R |only
datamart-0.1.0/datamart/man/evs2008.lvl2-data.Rd |only
datamart-0.1.0/datamart/man/xdata.Rd |only
datamart-0.2.0/datamart/DESCRIPTION | 21 +
datamart-0.2.0/datamart/MD5 | 116 +++++++--
datamart-0.2.0/datamart/NAMESPACE | 29 ++
datamart-0.2.0/datamart/R/000_datamart-doc.r | 15 -
datamart-0.2.0/datamart/R/001_DataStore.R |only
datamart-0.2.0/datamart/R/003_Xdata.R |only
datamart-0.2.0/datamart/R/005_Res.R | 2
datamart-0.2.0/datamart/R/010_Twttr.R | 20 -
datamart-0.2.0/datamart/R/020_Xsparql.R | 42 +--
datamart-0.2.0/datamart/R/030_Dbpedia.R | 18 -
datamart-0.2.0/datamart/R/040_InternalData.R | 23 -
datamart-0.2.0/datamart/R/045_Evs.R | 75 +-----
datamart-0.2.0/datamart/R/060_UrlData.R |only
datamart-0.2.0/datamart/R/070_mauna.R |only
datamart-0.2.0/datamart/R/080_iwv.R |only
datamart-0.2.0/datamart/R/090_Mashup.R |only
datamart-0.2.0/datamart/R/100_GScholar.R |only
datamart-0.2.0/datamart/R/101_statsoftpop.R |only
datamart-0.2.0/datamart/R/110_SourceForge.R |only
datamart-0.2.0/datamart/R/120_Gapminder.R |only
datamart-0.2.0/datamart/R/140_TourDeFrance.R |only
datamart-0.2.0/datamart/R/150_be_badestellen.R |only
datamart-0.2.0/datamart/R/200_Eurostat.R |only
datamart-0.2.0/datamart/R/mem.info.R |only
datamart-0.2.0/datamart/R/strexts.R |only
datamart-0.2.0/datamart/R/wikisites.R |only
datamart-0.2.0/datamart/etc/050_Mediawiki.R |only
datamart-0.2.0/datamart/etc/060_UrlData_alt.R |only
datamart-0.2.0/datamart/etc/199_berlin.R |only
datamart-0.2.0/datamart/etc/area51.txt |only
datamart-0.2.0/datamart/etc/dbpedia-bsp.txt |only
datamart-0.2.0/datamart/etc/misc.R |only
datamart-0.2.0/datamart/etc/stackoverflow.r |only
datamart-0.2.0/datamart/inst/doc/dbpedia-blog.Pnw |only
datamart-0.2.0/datamart/inst/doc/gapminder-blog.Pnw |only
datamart-0.2.0/datamart/inst/doc/internaldata-blog.Pnw | 51 ++--
datamart-0.2.0/datamart/man/DataStoreDriver-class.Rd |only
datamart-0.2.0/datamart/man/Dbpedia-class.Rd | 3
datamart-0.2.0/datamart/man/Evs-class.Rd | 14 -
datamart-0.2.0/datamart/man/Gscholar-class.Rd |only
datamart-0.2.0/datamart/man/InternalData-class.Rd | 3
datamart-0.2.0/datamart/man/Mashup-class.Rd |only
datamart-0.2.0/datamart/man/Resource-class.Rd | 3
datamart-0.2.0/datamart/man/SQLiteDataStore-class.Rd |only
datamart-0.2.0/datamart/man/Twttr-class.Rd | 6
datamart-0.2.0/datamart/man/UrlData-class.Rd |only
datamart-0.2.0/datamart/man/Xdata-class.Rd | 5
datamart-0.2.0/datamart/man/Xsparql-class.Rd | 3
datamart-0.2.0/datamart/man/be_bathing_areas.Rd |only
datamart-0.2.0/datamart/man/be_bathing_water_quality.Rd |only
datamart-0.2.0/datamart/man/data_store_driver.Rd |only
datamart-0.2.0/datamart/man/datamart-internal.Rd |only
datamart-0.2.0/datamart/man/datamart.Rd | 19 -
datamart-0.2.0/datamart/man/datastore.Rd |only
datamart-0.2.0/datamart/man/dbConnect-methods.Rd |only
datamart-0.2.0/datamart/man/dbCreateStmt.Rd |only
datamart-0.2.0/datamart/man/dbReadTable-methods.Rd |only
datamart-0.2.0/datamart/man/dbWriteTable-methods.Rd |only
datamart-0.2.0/datamart/man/dbpedia.Rd | 3
datamart-0.2.0/datamart/man/eurostat.Rd |only
datamart-0.2.0/datamart/man/expenditures.Rd | 3
datamart-0.2.0/datamart/man/gapminder.Rd |only
datamart-0.2.0/datamart/man/gscholar.Rd |only
datamart-0.2.0/datamart/man/internalData.Rd | 3
datamart-0.2.0/datamart/man/iwv_online.Rd |only
datamart-0.2.0/datamart/man/mashup.Rd |only
datamart-0.2.0/datamart/man/mauna_loa.Rd |only
datamart-0.2.0/datamart/man/mem.info.Rd |only
datamart-0.2.0/datamart/man/queries-methods.Rd | 17 -
datamart-0.2.0/datamart/man/query-methods.Rd | 188 +++++-----------
datamart-0.2.0/datamart/man/resource.Rd | 3
datamart-0.2.0/datamart/man/scrape-methods.Rd |only
datamart-0.2.0/datamart/man/scrapes-methods.Rd |only
datamart-0.2.0/datamart/man/sourceforge.Rd |only
datamart-0.2.0/datamart/man/statsoft_popularity.Rd |only
datamart-0.2.0/datamart/man/strdecrypt.Rd |only
datamart-0.2.0/datamart/man/strencrypt.Rd |only
datamart-0.2.0/datamart/man/strhead.Rd |only
datamart-0.2.0/datamart/man/strparse.Rd |only
datamart-0.2.0/datamart/man/strrecode.Rd |only
datamart-0.2.0/datamart/man/strsubst.Rd |only
datamart-0.2.0/datamart/man/strtail.Rd |only
datamart-0.2.0/datamart/man/tourdefrance.Rd |only
datamart-0.2.0/datamart/man/twttr.Rd | 3
datamart-0.2.0/datamart/man/urldata.Rd |only
datamart-0.2.0/datamart/man/wikisites.Rd |only
datamart-0.2.0/datamart/man/xsparql.Rd | 13 -
91 files changed, 306 insertions(+), 395 deletions(-)
Title: Applied Statistical Time Series Analysis
Diff between astsa versions 1.0 dated 2012-06-21 and 1.1 dated 2012-07-16
Description: Data sets and scripts for Time Series Analysis and Its
Applications: With R Examples by Shumway and Stoffer, 3rd
edition.
Author: David Stoffer
Maintainer: David Stoffer
DESCRIPTION | 8 -
MD5 | 133 ++++++++++++++++----------------
R/EM0.R | 2
R/EM1.R | 2
R/Ksmooth0.R | 2
R/Ksmooth1.R | 2
R/Ksmooth2.R | 2
R/LagReg.R | 2
R/SigExtract.R | 8 -
R/acf2.R | 4
R/arma.spec.R | 4
R/astsadata.R |only
R/lag1.plot.R | 4
R/lag2.plot.R | 4
R/mvspec.R | 211 +++++++++++++++++++++++++--------------------------
R/sarima.R | 24 +++--
R/sarima.for.R | 8 -
R/stoch.reg.R | 2
changes.txt |only
data/blood.rda |only
man/EM0.Rd | 8 -
man/EM1.Rd | 8 -
man/EQ5.Rd | 1
man/EXP6.Rd | 1
man/FDR.Rd | 8 -
man/HCT.Rd | 7 -
man/Kfilter0.Rd | 11 +-
man/Kfilter1.Rd | 10 +-
man/Kfilter2.Rd | 10 +-
man/Ksmooth0.Rd | 10 +-
man/Ksmooth1.Rd | 8 +
man/Ksmooth2.Rd | 8 +
man/PLT.Rd | 7 -
man/WBC.Rd | 7 -
man/acf2.Rd | 11 +-
man/ar1miss.Rd | 2
man/arf.Rd | 3
man/arma.spec.Rd | 7 -
man/astsa-package.Rd | 6 -
man/astsadata.Rd |only
man/beamd.Rd | 11 --
man/blood.Rd |only
man/bnrf1ebv.Rd | 2
man/bnrf1hvs.Rd | 4
man/climhyd.Rd | 19 +---
man/cmort.Rd | 3
man/econ5.Rd | 16 ---
man/eqexp.Rd | 6 -
man/flu.Rd | 3
man/fmri.Rd | 11 +-
man/gas.Rd | 1
man/gtemp.Rd | 4
man/gtemp2.Rd | 1
man/lag1.plot.Rd | 3
man/lag2.plot.Rd | 4
man/lead.Rd | 1
man/mvspec.Rd | 155 +++++++------------------------------
man/oil.Rd | 1
man/part.Rd | 1
man/qinfl.Rd | 4
man/qintr.Rd | 3
man/rec.Rd | 1
man/sales.Rd | 1
man/salt.Rd | 1
man/saltemp.Rd | 1
man/sarima.Rd | 7 -
man/sarima.for.Rd | 5 -
man/so2.Rd | 1
man/soi.Rd | 1
man/tempr.Rd | 1
70 files changed, 372 insertions(+), 455 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-10 1.0.0