Tue, 17 Jul 2012

Package rgl updated to version 0.92.891 with previous version 0.92.880 dated 2012-05-08

Title: 3D visualization device system (OpenGL)
Description: 3D visualization device (OpenGL)
Author: Daniel Adler , Duncan Murdoch
Maintainer: Duncan Murdoch

Diff between rgl versions 0.92.880 dated 2012-05-08 and 0.92.891 dated 2012-07-17

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Package NCBI2R updated to version 1.4.1 with previous version 1.4.0 dated 2012-06-13

Title: NCBI2R-An R package to navigate and annotate genes and SNPs
Description: NCBI2R is an R package that annotates lists of SNPs and/or genes, with current information from NCBI, including LD information. Functions are provided that with one command will provide annotation of the results from genome wide association studies to provide a broader context of their meaning. Other functions enable comparisons between a user's GWA results, and candidate snp/gene lists that are created from keywords, such as specific diseases, phenotypes or gene ontology terms. Commands are simple to follow and designed to work with R objects to integrate into existing workflows. The output produces text fields and weblinks to more information for items such as: gene descriptions, nucleotide positions, OMIM, pathways, phenotypes, and lists of interacting and neighboring genes. Annotation can then be used in R for further analysis, or the objects can be customized for use in spreadsheet programs or web browsers. The NCBI2R package wasdesigned to allow those performing genome analysis to produce output that could easily be understood by a person not familiar with R. Please see the website at http://NCBI2R.wordpress.com for more information. The internet is required for almost all of these functions. Use the function PrintNCBI2RInfo() for information.
Author: Scott Melville
Maintainer: Scott Melville

Diff between NCBI2R versions 1.4.0 dated 2012-06-13 and 1.4.1 dated 2012-07-17

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Package gppois updated to version 0.2-1 with previous version 0.2-0 dated 2012-07-16

Title: Gaussian Processes for Poisson-noised Data
Description: Analyzes data using Gaussian processes. Supported noise models include Gaussian or Poisson; the latter is handled using the Anscombe transform to turn it into Gaussian noise.
Author: Charles R. Hogg III
Maintainer: Charles R. Hogg III

Diff between gppois versions 0.2-0 dated 2012-07-16 and 0.2-1 dated 2012-07-17

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Package zendeskR updated to version 0.2 with previous version 0.1 dated 2012-07-15

Title: Zendesk API Wrapper
Description: This package provides an R wrapper for the Zendesk API
Author: Tanya Cashorali
Maintainer: Tanya Cashorali

Diff between zendeskR versions 0.1 dated 2012-07-15 and 0.2 dated 2012-07-17

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Package stratification updated to version 2.1-2 with previous version 2.1-1 dated 2012-06-30

Title: Univariate Stratification of Survey Populations
Description: This package performs univariate stratification of survey populations. The main function implements a generalization of the Lavallee-Hidiroglou method of stratum construction. The generalized method takes into account a discrepancy between the stratification variable and the survey variable. The determination of the optimal boundaries also incorporate, if desired, an anticipated non-response, a take-all stratum for large units, and a take-none stratum for small units. The well known cumulative root frequency rule of Dalenius and Hodges and the geometric rule of Gunning and Horgan are also implemented.
Author: Sophie Baillargeon and Louis-Paul Rivest
Maintainer: Sophie Baillargeon

Diff between stratification versions 2.1-1 dated 2012-06-30 and 2.1-2 dated 2012-07-17

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Package mixstock updated to version 0.9.5.1 with previous version 0.9.5 dated 2012-03-21

Title: functions for mixed stock analysis
Description: mixed stock analysis functions
Author: Ben Bolker
Maintainer: Ben Bolker

Diff between mixstock versions 0.9.5 dated 2012-03-21 and 0.9.5.1 dated 2012-07-17

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Package bbmle updated to version 1.0.5.1 with previous version 1.0.4.1 dated 2012-01-28

Title: Tools for general maximum likelihood estimation
Description: Methods and functions for fitting maximum likelihood models in R. This package modifies and extends the mle classes in the stats4 package.
Author: Ben Bolker , R Development Core Team
Maintainer: Ben Bolker

Diff between bbmle versions 1.0.4.1 dated 2012-01-28 and 1.0.5.1 dated 2012-07-17

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Package sperich updated to version 1.4-0 with previous version 1.3-7 dated 2012-03-02

Title: Auxiliary functions to estimate centers of biodiversity
Description: Provides some easy-to-use functions to interpolate species range based on species occurences and to estimate centers of biodiversity
Author: Maximilian Lange
Maintainer: Maximilian Lange

Diff between sperich versions 1.3-7 dated 2012-03-02 and 1.4-0 dated 2012-07-17

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Package Interpol.T updated to version 2.0 with previous version 1.0 dated 2012-02-01

Title: Hourly interpolation of multiple temperature daily series
Description: Hourly interpolation of daily minimum and maximum temperature series. Carries out interpolation on multiple series ad once. Requires some hourly series for calibration (alternatively can use default calibration table).
Author: Emanuele Eccel & Emanuele Cordano
Maintainer:

Diff between Interpol.T versions 1.0 dated 2012-02-01 and 2.0 dated 2012-07-17

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New package fanplot with initial version 1.0
Package: fanplot
Type: Package
Title: Visualisations of sequential probability distributions.
Version: 1.0
Date: 2012-06-25
Author: Guy J. Abel
Maintainer: Guy J. Abel
Depends: R (>= 2.10)
Description: The fanplot package contains a collection of R functions to effectively display plots of probabilistic forecasts, and other types of distributions, that may develop along an x-axis of a plot. The plotting of these distributions is based around two functions. The first function, pn, calculates the percentiles over a time period or form of index represented on an x-axis for a given distribution of results. These distributions typically come from some form of simulation. The second function, fan, plots the calculated percentiles of the distributions. The fanplot package contains some example MCMC simulations from stochastic volatility models to help illustrate the functions.
Suggests: R2OpenBUGS
License: GPL-2
LazyLoad: yes
LazyData: yes
Packaged: 2012-07-17 09:08:08 UTC; gabel
Repository: CRAN
Date/Publication: 2012-07-17 09:57:22

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New package Peak2Trough with initial version 1.2
Package: Peak2Trough
Type: Package
Title: Estimation of the peak-to-trough ratio of a seasonal variation component
Version: 1.2
Date: 2012-07-16
Author: Anette Luther Christensen
Maintainer: Anette Luther Christensen
Depends: R (>= 2.14.1) , rms , sspir , KFAS , Matrix, animation
Description: Estimation of the peak-to-trough ratio of a seasonal variation component.
License: GPL (>= 2)
Packaged: 2012-07-17 07:22:06 UTC; ajsx
Repository: CRAN
Date/Publication: 2012-07-17 08:29:56

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New package frontiles with initial version 1.1
Package: frontiles
Type: Package
Title: Partial frontier efficiency analysis
Encoding: latin1
Version: 1.1
Date: 2012-07-16
Author: Abdelaati Daouia, Thibault Laurent
Maintainer:
Depends: R (>= 2.8.1), classInt, colorspace, methods, rgl, sp
Suggests: ggplot2
Description: It calculates the alpha-quantile and order-m efficiency score in multi-dimension and computes several summaries and representation of the associated frontiers in 2d and 3d.
License: GPL (>= 2)
LazyLoad: yes
Collate: alphascore.r ordermscore.r ROCscore.r alphafrontier.2d.r
Packaged: 2012-07-16 17:43:45 UTC; laurent
Repository: CRAN
Date/Publication: 2012-07-17 08:26:00

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Package cplm updated to version 0.6-1 with previous version 0.5-1 dated 2012-01-07

Title: Compound Poisson linear models
Description: Likelihood-based and Bayesian methods for various compound Poisson linear models.
Author: Wayne Zhang
Maintainer: Wayne Zhang

Diff between cplm versions 0.5-1 dated 2012-01-07 and 0.6-1 dated 2012-07-17

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Package knitr updated to version 0.7 with previous version 0.6.3 dated 2012-06-22

Title: A general-purpose package for dynamic report generation in R
Description: This package provides a general-purpose tool for dynamic report generation in R, which can be used to deal with any type of (plain text) files, including Sweave, HTML, Markdown and reStructuredText. The patterns of code chunks and inline R expressions can be customized. R code is evaluated as if it were copied and pasted in an R terminal thanks to the evaluate package (e.g. we do not need to explicitly print() plots from ggplot2 or lattice). R code can be reformatted by the formatR package so that long lines are automatically wrapped, with indent and spaces being added, and comments being preserved. A simple caching mechanism is provided to cache results from computations for the first time and the computations will be skipped the next time. Almost all common graphics devices, including those in base R and add-on packages like Cairo, cairoDevice and tikzDevice, are built-in with this package and it is straightforward to switch between devices without writing any special functions. The width and height as well as alignment of plots in the output document can be specified in chunk options (the size of plots for graphics devices is still supported as usual). Multiple plots can be recorded in a single code chunk, and it is also allowed to rearrange plots to the end of a chunk or just keep the last plot. Warnings, messages and errors are written in the output document by default (can be turned off). Currently LaTeX, HTML, Markdown and reST are supported, and other output formats can be supported by hook functions. The large collection of hooks in this package makes it possible for the user to control almost everything in the R code input and output. Hooks can be used either to format the output or to run a specified R code fragment before or after a code chunk. The language in code chunks is not restricted to R only (there is simple support to Python and Awk, etc). Many features are borrowed or inspired by Sweave, cacheSweave, pgfSweave, brew and decumar.
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between knitr versions 0.6.3 dated 2012-06-22 and 0.7 dated 2012-07-17

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More information about knitr at CRAN
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New package cheddar with initial version 0.1-613
Package: cheddar
Type: Package
Title: Analysis and visualisation of ecological communities
Version: 0.1-613
Date: 2012-07-16
Author: Lawrence Hudson with contributions from Dan Reuman and Rob Emmerson
Maintainer: Lawrence Hudson
Description: Cheddar provides a flexible, extendable representation of an ecological community and a range of functions for analysis and visualisation, focusing on food web, body mass and numerical abundance data. It also allows inter-web comparisons such as examining changes in community structure over environmental, temporal or spatial gradients.
License: BSD
LazyLoad: yes
Packaged: 2012-07-16 16:50:07 UTC; lawrencehudson
Repository: CRAN
Date/Publication: 2012-07-17 06:02:58

More information about cheddar at CRAN
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New package bspmma with initial version 0.1-1
Package: bspmma
Title: bspmma: Bayesian Semiparametric Models for Meta-Analysis
Version: 0.1-1
Date: 2012-07-12
Author: Deborah Burr
Maintainer: Deborah Burr
Description: Some functions for nonparametric and semiparametric Bayesian models for random effects meta-analysis
License: GPL-2
LazyLoad: yes
Packaged: 2012-07-14 19:06:20 UTC; burr
Repository: CRAN
Date/Publication: 2012-07-17 05:15:06

More information about bspmma at CRAN
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