Thu, 19 Jul 2012

New package CBPS with initial version 0.1
Package: CBPS
Version: 0.1
Date: 2012-7-19
Title: R Package for Covariate Balancing Propensity Score
Author: Marc Ratkovic , Kosuke Imai , Christian Fong
Maintainer: Marc Ratkovic
Depends: R (>= 2.14), MASS, arm, MatchIt
Imports: arm
Description: CBPS is an R package that implements the covariate balancing propensity score proposed by Imai and Ratkovic (2012). The propensity score is estimated such that it maximizes the resulting covariate balance as well as the prediction of treatment assignment. The method, therefore, avoids an iteration between model fitting and balance checking. Currently, the package can only deal with binary treatment in the cross section setting but in the future it will be extended to other settings including non-binary treatments and causal inference with longitudinal data.
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
Packaged: 2012-07-19 14:57:31 UTC; kimai
Repository: CRAN
Date/Publication: 2012-07-19 17:16:10

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Package xtermStyle updated to version 2.2-4 with previous version 2.2-1 dated 2011-06-20

Title: Basic text formatting using xterm escape sequences
Description: Text formatting in xterm and ansi terminals using escape sequences. Supports colors and various font styles. It began as a standalone version of the 'xterm256' package by Romain Francois since that package is interwoven with the syntax highlighting package 'highlight' but has been developed in another direction since then. For some more sophisticated examples of this package functionality check out the 'dataview' package as that was the very reason 'xtermStyle' came into existence. However as 'xtermStyle' can be used independently they were released separately.
Author: Christofer Backlin
Maintainer: Christofer Backlin

Diff between xtermStyle versions 2.2-1 dated 2011-06-20 and 2.2-4 dated 2012-07-19

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Package qgraph updated to version 1.0.5-2 with previous version 1.0.5 dated 2012-05-25

Title: Network representations of relationships in data
Description: The qgraph package can be used to visualize data as networks.
Author: Sacha Epskamp, Angelique O. J. Cramer, Lourens J. Waldorp, Verena D. Schmittmann and Denny Borsboom
Maintainer: Sacha Epskamp

Diff between qgraph versions 1.0.5 dated 2012-05-25 and 1.0.5-2 dated 2012-07-19

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Package dataview updated to version 1.4-8 with previous version 1.3-1 dated 2011-06-20

Title: Human readable data presentation
Description: This package provides clear, informative and colorfull ways of presenting the contents of data.frame, list, environment etc. in the prompt. Ideally this package should be used in terminals supporting xterm 256 colour mode, e.g. the standard Ubuntu terminal. The Mac OS X terminal (as of Snow Leopard) only support ANSI colour, which still works but doesn't look as nice. On Windows systems no colouring is supported. If the output of functions like 'whos' is a mess or somehow doesn't look like it should check the help for the functions 'style' and 'style.mode' of the 'xtermStyle' package.
Author: Christofer Backlin
Maintainer: Christofer Backlin

Diff between dataview versions 1.3-1 dated 2011-06-20 and 1.4-8 dated 2012-07-19

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Package RNetCDF updated to version 1.6.1-2 with previous version 1.5.3-1 dated 2012-02-15

Title: R Interface to NetCDF Datasets
Description: This package provides an interface to Unidata's NetCDF library functions (version 3) and furthermore access to Unidata's UDUNITS calendar conversions. The routines and the documentation follow the NetCDF and UDUNITS C interface, so the corresponding manuals can be consulted for more detailed information.
Author: Pavel Michna
Maintainer: Pavel Michna

Diff between RNetCDF versions 1.5.3-1 dated 2012-02-15 and 1.6.1-2 dated 2012-07-19

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Package Rmisc updated to version 1.2 with previous version 1.0 dated 2012-03-21

Title: Rmisc: Ryan Miscellaneous
Description: The Rmisc library contains many functions useful for data analysis and utility operations.
Author: Ryan M. Hope
Maintainer: Ryan M. Hope

Diff between Rmisc versions 1.0 dated 2012-03-21 and 1.2 dated 2012-07-19

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Package relax updated to version 1.3.10 with previous version 1.3.8 dated 2012-01-27

Title: relax -- R Editor for Literate Analysis and lateX
Description: package relax contains some functions for report writing, presentation, and programming: relax(), tangleR(), weaveR(), (g)slider(). "relax" is written in R and Tcl/Tk. relax creates a new window (top level Tcl/Tk widget) that consists of two text fields and some buttons and menus. Text (chunks) and code (chunks) are inserted in the upper text field (report field). Code chunks are evaluated by clicking on EvalRCode. Results are shown in the lower text field (output field) and will be transfered to the report field by pressing on Insert. In this way you get correct reports. These reports can be loaded again in cause of presentation, modification and result checking. tangleR() and weaveR() implement a plain kind of tangling and weaving. gslider() and slider() are designed to define sliders for interactive experiments in a simple way. The syntax rules of code chunks and text chunks are defined by the noweb system proposed by Norman Ramsey (http://www.eecs.harvard.edu/~nr/noweb/intro.html). For integrating jpeg graphics into the text field you need the Tcl/Tk Img package of Jan Nijtmans (see: http://members.chello.nl/~j.nijtmans/img.html, http://home.kpnplanet.nl/~J.Nijtmans@kpnplanet.nl/img.html or http://tkimg.sourceforge.net/, the package is found on http://sourceforge.net/projects/tkimg). If an Img version is integrated in the relax package the license terms concerning the img package will be found in the source file of the package, for example in: relax/src/tkimg1.3.tar.gz. Older windows versions of relax contain the Tcl/Tk img package, so no further installations have to be done.
Author: Hans Peter Wolf
Maintainer: Hans Peter Wolf

Diff between relax versions 1.3.8 dated 2012-01-27 and 1.3.10 dated 2012-07-19

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Package penalized updated to version 0.9-41 with previous version 0.9-40 dated 2012-06-19

Title: L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
Description: A package for fitting possibly high dimensional penalized regression models. The penalty structure can be any combination of an L1 penalty (lasso and fused lasso), an L2 penalty (ridge) and a positivity constraint on the regression coefficients. The supported regression models are linear, logistic and poisson regression and the Cox Proportional Hazards model. Cross-validation routines allow optimization of the tuning parameters.
Author: Jelle Goeman , Rosa Meijer, Nimisha Chaturvedi
Maintainer: Jelle Goeman

Diff between penalized versions 0.9-40 dated 2012-06-19 and 0.9-41 dated 2012-07-19

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Package rgl updated to version 0.92.892 with previous version 0.92.891 dated 2012-07-17

Title: 3D visualization device system (OpenGL)
Description: 3D visualization device (OpenGL)
Author: Daniel Adler , Duncan Murdoch
Maintainer: Duncan Murdoch

Diff between rgl versions 0.92.891 dated 2012-07-17 and 0.92.892 dated 2012-07-19

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Package RNetLogo updated to version 0.9.3 with previous version 0.9.2 dated 2012-01-09

Title: Provides an interface to the agent-based modelling plattform NetLogo
Description: Interface to embed NetLogo into the R environment with headless (no GUI) and interactive GUI mode. Provides functions to load models, execute commands and to get values from reporters. Equivalent to the NetLogo Mathematica Link http://ccl.northwestern.edu/netlogo/docs/mathematica.html
Author: Jan C. Thiele
Maintainer: Jan C. Thiele

Diff between RNetLogo versions 0.9.2 dated 2012-01-09 and 0.9.3 dated 2012-07-19

 RNetLogo-0.9.2/RNetLogo/inst/examples/code_samples/13-NLGetGraph                                                         |only
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 RNetLogo-0.9.3/RNetLogo/DESCRIPTION                                                                                      |   18 -
 RNetLogo-0.9.3/RNetLogo/MD5                                                                                              |  164 +++++-----
 RNetLogo-0.9.3/RNetLogo/NAMESPACE                                                                                        |    2 
 RNetLogo-0.9.3/RNetLogo/R/NLGetAgentSet.R                                                                                |  109 ++++--
 RNetLogo-0.9.3/RNetLogo/R/NLGetGraph.R                                                                                   |   24 -
 RNetLogo-0.9.3/RNetLogo/R/NLGetPatches.R                                                                                 |  126 +++++--
 RNetLogo-0.9.3/RNetLogo/R/NLSetAgentSet.R                                                                                |only
 RNetLogo-0.9.3/RNetLogo/R/NLSetPatches.R                                                                                 |    2 
 RNetLogo-0.9.3/RNetLogo/R/NLStart.R                                                                                      |   34 +-
 RNetLogo-0.9.3/RNetLogo/R/onLoad.R                                                                                       |    3 
 RNetLogo-0.9.3/RNetLogo/inst/CITATION                                                                                    |   18 -
 RNetLogo-0.9.3/RNetLogo/inst/Change.log                                                                                  |   11 
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 RNetLogo-0.9.3/RNetLogo/inst/examples/applications/Database/database.R                                                   |    4 
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 RNetLogo-0.9.3/RNetLogo/inst/examples/code_samples/4-NLReport/NLReport.R                                                 |    4 
 RNetLogo-0.9.3/RNetLogo/inst/examples/code_samples/5-NLQuit/NLQuit.R                                                     |    4 
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 RNetLogo-0.9.3/RNetLogo/inst/examples/code_samples/9-NLDfToList/NLDfToList.R                                             |    6 
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 RNetLogo-0.9.3/RNetLogo/inst/java/java_v40                                                                               |only
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 RNetLogo-0.9.3/RNetLogo/inst/quickStartGuide.txt                                                                         |    4 
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 RNetLogo-0.9.3/RNetLogo/inst/tutorial/tutorial.pdf                                                                       |binary
 RNetLogo-0.9.3/RNetLogo/man/NLCommand.Rd                                                                                 |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLDfToList.Rd                                                                                |    4 
 RNetLogo-0.9.3/RNetLogo/man/NLDoCommand.Rd                                                                               |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLDoCommandWhile.Rd                                                                          |    6 
 RNetLogo-0.9.3/RNetLogo/man/NLDoReport.Rd                                                                                |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLDoReportWhile.Rd                                                                           |    6 
 RNetLogo-0.9.3/RNetLogo/man/NLGetAgentSet.Rd                                                                             |   67 +++-
 RNetLogo-0.9.3/RNetLogo/man/NLGetGraph.Rd                                                                                |    6 
 RNetLogo-0.9.3/RNetLogo/man/NLGetPatches.Rd                                                                              |   70 ++--
 RNetLogo-0.9.3/RNetLogo/man/NLLoadModel.Rd                                                                               |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLQuit.Rd                                                                                    |   11 
 RNetLogo-0.9.3/RNetLogo/man/NLReport.Rd                                                                                  |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLSetAgentSet.Rd                                                                             |only
 RNetLogo-0.9.3/RNetLogo/man/NLSetPatches.Rd                                                                              |    6 
 RNetLogo-0.9.3/RNetLogo/man/NLSourceFromString.Rd                                                                        |    2 
 RNetLogo-0.9.3/RNetLogo/man/NLStart.Rd                                                                                   |   14 
 RNetLogo-0.9.3/RNetLogo/man/RNetLogo-package.Rd                                                                          |    4 
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Package RcmdrPlugin.DoE updated to version 0.11-6 with previous version 0.11-5 dated 2011-11-15

Title: R Commander Plugin for (industrial) Design of Experiments
Description: WARNING: This package is currently in beta status! The package provides a platform-independent GUI for design of experiments. It is implemented as a plugin to the R-Commander, which is a more general graphical user interface for statistics in R based on tcl/tk. DoE functionality can be accessed through the menu Design that is added to the R-Commander menus.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping

Diff between RcmdrPlugin.DoE versions 0.11-5 dated 2011-11-15 and 0.11-6 dated 2012-07-19

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Package classInt updated to version 0.1-18 with previous version 0.1-17 dated 2011-11-14

Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for mapping or other graphics purposes
Author: Roger Bivand , with contributions by Hisaji Ono and Richard Dunlap
Maintainer: Roger Bivand

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Package ads updated to version 1.2-11 with previous version 1.2-10 dated 2010-04-20

Title: Spatial point patterns analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley's K-function, for univariate, multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with test of statitical significance based on Monte Carlo simulations.
Author: R. Pelissier and F. Goreaud
Maintainer: Raphael Pelissier

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Package tolerance updated to version 0.5.0 with previous version 0.4.0 dated 2011-12-07

Title: Functions for calculating tolerance intervals
Description: Tolerance limits provide the limits between which we can expect to find a specified proportion of a population with a given level of confidence. This package provides functions for estimating tolerance limits for various distributions. Plotting is also available for tolerance limits of continuous random variables.
Author: Derek S. Young
Maintainer: Derek S. Young

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 tolerance-0.5.0/tolerance/R/bintolint.R             |  216 ++++++++--------
 tolerance-0.5.0/tolerance/R/diffprop.R              |only
 tolerance-0.5.0/tolerance/R/exp2tolint.R            |   98 +++----
 tolerance-0.5.0/tolerance/R/fidbintolint.R          |only
 tolerance-0.5.0/tolerance/R/fidnegbintolint.R       |only
 tolerance-0.5.0/tolerance/R/fidpoistolint.R         |only
 tolerance-0.5.0/tolerance/R/gammatolint.R           |    4 
 tolerance-0.5.0/tolerance/R/hypertolint.R           |only
 tolerance-0.5.0/tolerance/R/negbintolint.R          |  114 +++++---
 tolerance-0.5.0/tolerance/R/neghyper.R              |only
 tolerance-0.5.0/tolerance/R/neghypertolint.R        |only
 tolerance-0.5.0/tolerance/R/nonlinregtolint.R       |  160 ++++++------
 tolerance-0.5.0/tolerance/R/normtolint.R            |    6 
 tolerance-0.5.0/tolerance/R/poistolint.R            |  151 ++++++-----
 tolerance-0.5.0/tolerance/R/rFUN.R                  |only
 tolerance-0.5.0/tolerance/R/uma.R                   |   31 +-
 tolerance-0.5.0/tolerance/R/zetafun.R               |    3 
 tolerance-0.5.0/tolerance/R/zipfman.R               |  257 ++++++++++++++------
 tolerance-0.5.0/tolerance/R/zipftolint.R            |   18 -
 tolerance-0.5.0/tolerance/R/zmll.R                  |    3 
 tolerance-0.5.0/tolerance/man/F1.Rd                 |only
 tolerance-0.5.0/tolerance/man/Kfactor.Rd            |   24 +
 tolerance-0.5.0/tolerance/man/NegHypergeometric.Rd  |only
 tolerance-0.5.0/tolerance/man/anovatolint.Rd        |   19 -
 tolerance-0.5.0/tolerance/man/bintolint.Rd          |  188 ++++++++------
 tolerance-0.5.0/tolerance/man/diffnormtolint.Rd     |    2 
 tolerance-0.5.0/tolerance/man/diffprop.Rd           |only
 tolerance-0.5.0/tolerance/man/exp2tolint.Rd         |   10 
 tolerance-0.5.0/tolerance/man/fidbintolint.Rd       |only
 tolerance-0.5.0/tolerance/man/fidnegbintolint.Rd    |only
 tolerance-0.5.0/tolerance/man/fidpoistolint.Rd      |only
 tolerance-0.5.0/tolerance/man/gammatolint.Rd        |   24 +
 tolerance-0.5.0/tolerance/man/hypertolint.Rd        |only
 tolerance-0.5.0/tolerance/man/negbintolint.Rd       |   50 ++-
 tolerance-0.5.0/tolerance/man/neghypertolint.Rd     |only
 tolerance-0.5.0/tolerance/man/nonlinregtolint.Rd    |    4 
 tolerance-0.5.0/tolerance/man/nonparregtolint.Rd    |    2 
 tolerance-0.5.0/tolerance/man/nonpartolint.Rd       |    2 
 tolerance-0.5.0/tolerance/man/normtolint.Rd         |   19 +
 tolerance-0.5.0/tolerance/man/poistolint.Rd         |  169 +++++++------
 tolerance-0.5.0/tolerance/man/regtolint.Rd          |    4 
 tolerance-0.5.0/tolerance/man/tolerance-internal.Rd |    6 
 tolerance-0.5.0/tolerance/man/tolerance.package.Rd  |    4 
 tolerance-0.5.0/tolerance/man/umatolint.Rd          |    3 
 tolerance-0.5.0/tolerance/man/zipfman.Rd            |  106 +++++---
 tolerance-0.5.0/tolerance/man/zipftolint.Rd         |   22 -
 tolerance-0.5.0/tolerance/man/zmll.Rd               |   19 -
 58 files changed, 1277 insertions(+), 835 deletions(-)

More information about tolerance at CRAN
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New package pln with initial version 0.2
Package: pln
Type: Package
Title: Polytomous logit-normit (graded logistic) model estimation
Version: 0.2
Date: 2012-07-09
Author: Carl F. Falk and Harry Joe
Maintainer: Carl F. Falk
Description: Performs bivariate composite likelihood and full information maximum likelihood estimation for polytomous logit-normit (graded logistic) item response theory (IRT) models.
Depends: R (>= 2.9.0)
License: GPL-3
LazyLoad: yes
Packaged: 2012-07-10 21:34:10 UTC; cf
Repository: CRAN
Date/Publication: 2012-07-19 05:27:08

More information about pln at CRAN
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Package ENA updated to version 1.1-103 with previous version 1.1-94 dated 2012-07-18

Title: Ensemble Network Aggregation
Description: Ensemble network aggregation is an approach which leverages the inverse-rank-product (IRP) method to combine networks. This package provides the capabilities to use IRP to bootstrap a dataset using a single method, to aggregate the networks produced by multiple methods, or to aggregate the networks produced on different datasets.
Author: Jeffrey D. Allen
Maintainer: Jeffrey D. Allen

Diff between ENA versions 1.1-94 dated 2012-07-18 and 1.1-103 dated 2012-07-19

 DESCRIPTION         |    6 +++---
 MD5                 |    9 ++++++---
 R/symmetricize.R    |   20 ++++++++++++++++++--
 inst                |only
 man/symmetricize.Rd |   22 ++++++++++++++++++++--
 vignettes           |only
 6 files changed, 47 insertions(+), 10 deletions(-)

More information about ENA at CRAN
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