Title: Practical Numerical Math Functions
Diff between pracma versions 1.1.0 dated 2012-06-06 and 1.1.6 dated 2012-07-20
Description: Implementations of functions in numerical analysis as R
scripts, with a special view on on optimization and time series
routines. Uses Matlab/Octave function names where appropriate
to simplify porting.
Author: Hans W Borchers
Maintainer: HwB
pracma-1.1.0/pracma/R/mdiag.R |only
pracma-1.1.0/pracma/R/mtrace.R |only
pracma-1.1.0/pracma/man/mdiag.Rd |only
pracma-1.1.0/pracma/man/mtrace.Rd |only
pracma-1.1.0/pracma/tests/.Rapp.history |only
pracma-1.1.0/pracma/tests/mdiag.R |only
pracma-1.1.0/pracma/tests/mtrace.R |only
pracma-1.1.6/pracma/DESCRIPTION | 10 -
pracma-1.1.6/pracma/MD5 | 169 +++++++++++++++--------------
pracma-1.1.6/pracma/NEWS | 46 +++++++
pracma-1.1.6/pracma/R/andor.R | 4
pracma-1.1.6/pracma/R/angle.R | 6 -
pracma-1.1.6/pracma/R/beep.R | 3
pracma-1.1.6/pracma/R/brentDekker.R | 2
pracma-1.1.6/pracma/R/cubicspline.R | 2
pracma-1.1.6/pracma/R/diag.R |only
pracma-1.1.6/pracma/R/erf.R | 4
pracma-1.1.6/pracma/R/expm.R | 8 -
pracma-1.1.6/pracma/R/find.R | 2
pracma-1.1.6/pracma/R/findzeros.R | 1
pracma-1.1.6/pracma/R/fletcher_powell.R |only
pracma-1.1.6/pracma/R/fminbnd.R | 148 +++++++++++++++++++++----
pracma-1.1.6/pracma/R/fminsearch.R |only
pracma-1.1.6/pracma/R/gammainc.R |only
pracma-1.1.6/pracma/R/gaussLegendre.R | 6 -
pracma-1.1.6/pracma/R/hadamard.R | 6 -
pracma-1.1.6/pracma/R/hooke_jeeves.R |only
pracma-1.1.6/pracma/R/invlap.R | 2
pracma-1.1.6/pracma/R/magic.R | 2
pracma-1.1.6/pracma/R/mode.R | 2
pracma-1.1.6/pracma/R/modular.R | 2
pracma-1.1.6/pracma/R/nelder_mead.R |only
pracma-1.1.6/pracma/R/pade.R | 4
pracma-1.1.6/pracma/R/poly.R | 2
pracma-1.1.6/pracma/R/poly2str.R | 2
pracma-1.1.6/pracma/R/polylog.R |only
pracma-1.1.6/pracma/R/ppfit.R | 2
pracma-1.1.6/pracma/R/rationalfit.R | 6 -
pracma-1.1.6/pracma/R/repmat.R | 2
pracma-1.1.6/pracma/R/steep_descent.R |only
pracma-1.1.6/pracma/R/strings.R | 4
pracma-1.1.6/pracma/R/testfunctions.R |only
pracma-1.1.6/pracma/R/trace.R |only
pracma-1.1.6/pracma/R/transfinite.R |only
pracma-1.1.6/pracma/R/triquad.R | 2
pracma-1.1.6/pracma/R/wilkinson.R | 2
pracma-1.1.6/pracma/R/zzz.R | 2
pracma-1.1.6/pracma/data/brown72.rda |binary
pracma-1.1.6/pracma/data/titanium.rda |binary
pracma-1.1.6/pracma/inst/NEWS.Rd | 56 +++++++++
pracma-1.1.6/pracma/inst/doc/NEWS.pdf |binary
pracma-1.1.6/pracma/man/andor.Rd | 16 +-
pracma-1.1.6/pracma/man/angle.Rd | 19 +--
pracma-1.1.6/pracma/man/beep.Rd | 18 ++-
pracma-1.1.6/pracma/man/blkdiag.Rd | 2
pracma-1.1.6/pracma/man/brentDekker.Rd | 8 -
pracma-1.1.6/pracma/man/ceil.Rd | 6 -
pracma-1.1.6/pracma/man/diag.Rd |only
pracma-1.1.6/pracma/man/eye.Rd | 2
pracma-1.1.6/pracma/man/find.Rd | 12 +-
pracma-1.1.6/pracma/man/fletcher_powell.Rd |only
pracma-1.1.6/pracma/man/fminbnd.Rd | 28 ++--
pracma-1.1.6/pracma/man/fminsearch.Rd | 22 ++-
pracma-1.1.6/pracma/man/fzero.Rd | 2
pracma-1.1.6/pracma/man/gammainc.Rd |only
pracma-1.1.6/pracma/man/hadamard.Rd | 12 +-
pracma-1.1.6/pracma/man/hankel.Rd | 2
pracma-1.1.6/pracma/man/hooke_jeeves.Rd |only
pracma-1.1.6/pracma/man/horner.Rd | 2
pracma-1.1.6/pracma/man/lsqnonlin.Rd | 12 ++
pracma-1.1.6/pracma/man/mode.Rd | 10 -
pracma-1.1.6/pracma/man/nelder_mead.Rd |only
pracma-1.1.6/pracma/man/neville.Rd | 2
pracma-1.1.6/pracma/man/newtonHorner.Rd | 2
pracma-1.1.6/pracma/man/newtonInterp.Rd | 2
pracma-1.1.6/pracma/man/poly.Rd | 14 +-
pracma-1.1.6/pracma/man/polylog.Rd |only
pracma-1.1.6/pracma/man/repmat.Rd | 2
pracma-1.1.6/pracma/man/reshape.Rd | 14 +-
pracma-1.1.6/pracma/man/ridders.Rd | 2
pracma-1.1.6/pracma/man/roots.Rd | 2
pracma-1.1.6/pracma/man/steep_descent.Rd |only
pracma-1.1.6/pracma/man/strjust.Rd | 2
pracma-1.1.6/pracma/man/strtrim.Rd | 10 -
pracma-1.1.6/pracma/man/subspace.Rd | 3
pracma-1.1.6/pracma/man/testfunctions.Rd |only
pracma-1.1.6/pracma/man/toeplitz.Rd | 14 +-
pracma-1.1.6/pracma/man/trace.Rd |only
pracma-1.1.6/pracma/man/transfinite.Rd |only
pracma-1.1.6/pracma/man/tri.Rd | 2
pracma-1.1.6/pracma/man/wilkinson.Rd | 2
pracma-1.1.6/pracma/tests/blkdiag.R | 4
pracma-1.1.6/pracma/tests/ceil.R | 12 +-
pracma-1.1.6/pracma/tests/diag.R |only
pracma-1.1.6/pracma/tests/find.R | 12 +-
pracma-1.1.6/pracma/tests/hadamard.R | 22 +--
pracma-1.1.6/pracma/tests/mode.R | 10 -
pracma-1.1.6/pracma/tests/poly.R | 34 ++---
pracma-1.1.6/pracma/tests/strings.R | 4
pracma-1.1.6/pracma/tests/subspace.R | 2
pracma-1.1.6/pracma/tests/trace.R |only
101 files changed, 556 insertions(+), 299 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 2.3.1 dated 2012-06-13 and 2.4.1 dated 2012-07-20
Description: Each function accomplishes the work of several or more
standard R functions. For example, two function calls, Read()
and CountAll(), read the data and generate descriptive
statistics for all variables in the data frame, plus histograms
and bar charts as appropriate. Other functions provide for
descriptive statistics, a comprehensive regression analysis,
ANOVA and t-test, color plotting, color bar chart, color
histogram, color box plot, color density curves, a calibrated
power curve, and the reading and display of csv and other
formatted data. The function Help provides a help system that
suggests specific analyses and functions. Variable labels, and
color themes with the set function, are also available. A
confirmatory factor analysis of multiple indicator measurement
models is also available as well as pedagogical routines for
data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland
State University
Maintainer: David W. Gerbing
lessR-2.3.1/lessR/R/RunChart.R |only
lessR-2.3.1/lessR/R/color.barchart.R |only
lessR-2.3.1/lessR/R/color.boxplot.R |only
lessR-2.3.1/lessR/R/color.density.R |only
lessR-2.3.1/lessR/R/color.hist.R |only
lessR-2.3.1/lessR/R/cr.default.R |only
lessR-2.3.1/lessR/R/rc.R |only
lessR-2.3.1/lessR/R/rc.zmain.R |only
lessR-2.3.1/lessR/R/reg.z4PredGraph.R |only
lessR-2.3.1/lessR/R/sim.CImean.R |only
lessR-2.3.1/lessR/R/sim.CLT.R |only
lessR-2.3.1/lessR/R/sim.flips.R |only
lessR-2.3.1/lessR/R/sim.means.R |only
lessR-2.3.1/lessR/R/zFirst.R |only
lessR-2.3.1/lessR/R/zInternal.R |only
lessR-2.3.1/lessR/data/dat.employee.csv.gz |only
lessR-2.3.1/lessR/data/dat.twogroup.csv.gz |only
lessR-2.3.1/lessR/man/RunChart.Rd |only
lessR-2.3.1/lessR/man/dat.employee.csv.Rd |only
lessR-2.3.1/lessR/man/dat.twogroup.csv.Rd |only
lessR-2.3.1/lessR/man/sim.CImean.Rd |only
lessR-2.3.1/lessR/man/sim.CLT.Rd |only
lessR-2.3.1/lessR/man/sim.flips.Rd |only
lessR-2.3.1/lessR/man/sim.means.Rd |only
lessR-2.4.1/lessR/DESCRIPTION | 15
lessR-2.4.1/lessR/MD5 | 207 +++++----
lessR-2.4.1/lessR/NAMESPACE | 24 -
lessR-2.4.1/lessR/NEWS | 161 ++++++-
lessR-2.4.1/lessR/R/ANOVA.R | 2
lessR-2.4.1/lessR/R/BarChart.R | 36 +
lessR-2.4.1/lessR/R/BoxPlot.R | 7
lessR-2.4.1/lessR/R/Correlation.R | 40 +
lessR-2.4.1/lessR/R/CountAll.R | 11
lessR-2.4.1/lessR/R/Density.R | 24 -
lessR-2.4.1/lessR/R/Help.R | 625 ++++++++++++++++++-----------
lessR-2.4.1/lessR/R/Histogram.R | 13
lessR-2.4.1/lessR/R/LineChart.R |only
lessR-2.4.1/lessR/R/Model.R | 8
lessR-2.4.1/lessR/R/PieChart.R | 19
lessR-2.4.1/lessR/R/Plot.R | 135 +++++-
lessR-2.4.1/lessR/R/Read.R | 33 -
lessR-2.4.1/lessR/R/Recode.R |only
lessR-2.4.1/lessR/R/Regression.R | 61 +-
lessR-2.4.1/lessR/R/SummaryStats.R | 8
lessR-2.4.1/lessR/R/bc.data.frame.R | 22 -
lessR-2.4.1/lessR/R/bc.default.R | 28 +
lessR-2.4.1/lessR/R/bc.zdefault.R | 214 +++++++--
lessR-2.4.1/lessR/R/bx.data.frame.R | 37 -
lessR-2.4.1/lessR/R/bx.default.R | 22 -
lessR-2.4.1/lessR/R/bx.zdefault.R | 77 +--
lessR-2.4.1/lessR/R/cfa.R |only
lessR-2.4.1/lessR/R/corCFA.R |only
lessR-2.4.1/lessR/R/corEFA.R |only
lessR-2.4.1/lessR/R/corListVars.R |only
lessR-2.4.1/lessR/R/corProp.R |only
lessR-2.4.1/lessR/R/corRead.R |only
lessR-2.4.1/lessR/R/corReflect.R |only
lessR-2.4.1/lessR/R/corReorder.R |only
lessR-2.4.1/lessR/R/corScree.R |only
lessR-2.4.1/lessR/R/cr.data.frame.R | 81 +++
lessR-2.4.1/lessR/R/cr.zdefault.R | 65 +--
lessR-2.4.1/lessR/R/den.zmain.R | 17
lessR-2.4.1/lessR/R/dp.zmain.R | 64 ++
lessR-2.4.1/lessR/R/efa.R |only
lessR-2.4.1/lessR/R/hst.data.frame.R | 21
lessR-2.4.1/lessR/R/hst.default.R | 24 -
lessR-2.4.1/lessR/R/hst.zdefault.R | 80 +--
lessR-2.4.1/lessR/R/lc.R |only
lessR-2.4.1/lessR/R/lc.zmain.R |only
lessR-2.4.1/lessR/R/listvars.R |only
lessR-2.4.1/lessR/R/pc.zmain.R | 14
lessR-2.4.1/lessR/R/plt.zlegend.R |only
lessR-2.4.1/lessR/R/plt.zmain.R | 132 +++---
lessR-2.4.1/lessR/R/prop.R |only
lessR-2.4.1/lessR/R/rad.cor.R |only
lessR-2.4.1/lessR/R/rec.R |only
lessR-2.4.1/lessR/R/rec.zmain.R |only
lessR-2.4.1/lessR/R/reflect.R |only
lessR-2.4.1/lessR/R/reg.z3Residual.R | 61 +-
lessR-2.4.1/lessR/R/reg.z4Pred.R |only
lessR-2.4.1/lessR/R/reg.z5Plot.R |only
lessR-2.4.1/lessR/R/reord.R |only
lessR-2.4.1/lessR/R/scree.R |only
lessR-2.4.1/lessR/R/set.R | 6
lessR-2.4.1/lessR/R/simCImean.R |only
lessR-2.4.1/lessR/R/simCLT.R |only
lessR-2.4.1/lessR/R/simFlips.R |only
lessR-2.4.1/lessR/R/simMeans.R |only
lessR-2.4.1/lessR/R/ss.zdata.frame.R | 15
lessR-2.4.1/lessR/R/ss.zfactor.R | 23 -
lessR-2.4.1/lessR/R/ss.znumeric.R | 5
lessR-2.4.1/lessR/R/to.R | 1
lessR-2.4.1/lessR/R/tt.z2graph.R |only
lessR-2.4.1/lessR/R/tt.z2group.R | 199 +--------
lessR-2.4.1/lessR/R/tt.zformula.R | 10
lessR-2.4.1/lessR/R/ttest.R | 42 -
lessR-2.4.1/lessR/R/ttestPower.R | 154 -------
lessR-2.4.1/lessR/R/ttp2zgraph.R |only
lessR-2.4.1/lessR/R/zzz.R |only
lessR-2.4.1/lessR/data/datEmployee.rda |only
lessR-2.4.1/lessR/data/datMach4.rda |only
lessR-2.4.1/lessR/data/datTwoGroup.rda |only
lessR-2.4.1/lessR/man/ANOVA.Rd | 4
lessR-2.4.1/lessR/man/BarChart.Rd | 127 +++--
lessR-2.4.1/lessR/man/BoxPlot.Rd | 77 ++-
lessR-2.4.1/lessR/man/Correlation.Rd | 42 +
lessR-2.4.1/lessR/man/Density.Rd | 40 +
lessR-2.4.1/lessR/man/Help.Rd | 15
lessR-2.4.1/lessR/man/Histogram.Rd | 75 ++-
lessR-2.4.1/lessR/man/LineChart.Rd |only
lessR-2.4.1/lessR/man/Model.Rd | 3
lessR-2.4.1/lessR/man/PieChart.Rd | 21
lessR-2.4.1/lessR/man/Plot.Rd | 177 ++++----
lessR-2.4.1/lessR/man/Read.Rd | 17
lessR-2.4.1/lessR/man/Recode.Rd |only
lessR-2.4.1/lessR/man/Regression.Rd | 26 -
lessR-2.4.1/lessR/man/SummaryStats.Rd | 28 +
lessR-2.4.1/lessR/man/corCFA.Rd |only
lessR-2.4.1/lessR/man/corEFA.Rd |only
lessR-2.4.1/lessR/man/corListVars.Rd |only
lessR-2.4.1/lessR/man/corProp.Rd |only
lessR-2.4.1/lessR/man/corRead.Rd |only
lessR-2.4.1/lessR/man/corReflect.Rd |only
lessR-2.4.1/lessR/man/corReorder.Rd |only
lessR-2.4.1/lessR/man/corScree.Rd |only
lessR-2.4.1/lessR/man/datEmployee.Rd |only
lessR-2.4.1/lessR/man/datMach4.Rd |only
lessR-2.4.1/lessR/man/datTwogroup.Rd |only
lessR-2.4.1/lessR/man/label.Rd | 9
lessR-2.4.1/lessR/man/set.Rd | 11
lessR-2.4.1/lessR/man/showColors.Rd | 2
lessR-2.4.1/lessR/man/simCImean.Rd |only
lessR-2.4.1/lessR/man/simCLT.Rd |only
lessR-2.4.1/lessR/man/simFlips.Rd |only
lessR-2.4.1/lessR/man/simMeans.Rd |only
lessR-2.4.1/lessR/man/to.Rd | 4
lessR-2.4.1/lessR/man/ttest.Rd | 23 -
lessR-2.4.1/lessR/man/ttestPower.Rd | 6
lessR-2.4.1/lessR/man/values.Rd | 2
lessR-2.4.1/lessR/src |only
140 files changed, 2128 insertions(+), 1424 deletions(-)
Title: Fractional Factorial designs with 2-level factors
Diff between FrF2 versions 1.6 dated 2012-07-11 and 1.6-1 dated 2012-07-20
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is still under development. While much of the intended
functionality is already available, some changes and
improvements are still to be expected. Suggestions are welcome.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
DESCRIPTION | 8 +++---
MD5 | 18 +++++++-------
R/FrF2.R | 6 +++-
R/estimable2fis.R | 61 ++++++++++++++++++++++++++++++++++----------------
R/sysdata.rda |binary
inst/NEWS | 4 +++
man/CIG.Rd | 25 ++++++++++++++++++++
man/FrF2.Rd | 25 ++++++++++++++++++--
man/estimable.2fis.Rd | 13 +++++++---
man/utilitiesCat.Rd | 6 +++-
10 files changed, 124 insertions(+), 42 deletions(-)
Title: Building Kriging models from FANOVA graphs
Diff between fanovaGraph versions 1.2 dated 2012-05-14 and 1.3 dated 2012-07-20
Description: Estimation and plotting of a function's FANOVA graph to
identify the interaction structure and fitting, prediction and
simulation of a kriging model modified by the identified
structure.
Author: Jana Fruth, Thomas Muehlenstaedt, Olivier Roustant
Maintainer:
fanovaGraph-1.2/fanovaGraph/R/plotDeltaSteps.R |only
fanovaGraph-1.2/fanovaGraph/R/plotGraph.R |only
fanovaGraph-1.2/fanovaGraph/man/plotDeltaSteps.Rd |only
fanovaGraph-1.2/fanovaGraph/man/plotGraph.Rd |only
fanovaGraph-1.3/fanovaGraph/CHANGELOG | 5
fanovaGraph-1.3/fanovaGraph/DESCRIPTION | 10 -
fanovaGraph-1.3/fanovaGraph/MD5 | 58 +++----
fanovaGraph-1.3/fanovaGraph/NAMESPACE | 4
fanovaGraph-1.3/fanovaGraph/R/AdditiveKriging.R | 18 +-
fanovaGraph-1.3/fanovaGraph/R/estimateGraph.R | 145 +++++++++---------
fanovaGraph-1.3/fanovaGraph/R/estimateGraphFixFast.R | 5
fanovaGraph-1.3/fanovaGraph/R/estimateGraphFixLO.R | 70 +++++---
fanovaGraph-1.3/fanovaGraph/R/estimateGraphRBD.R | 5
fanovaGraph-1.3/fanovaGraph/R/estimateGraphSob.R | 7
fanovaGraph-1.3/fanovaGraph/R/interactive.R | 40 ++--
fanovaGraph-1.3/fanovaGraph/R/kmPredictWrapper.R |only
fanovaGraph-1.3/fanovaGraph/R/plotDeltaJumps.R |only
fanovaGraph-1.3/fanovaGraph/R/plotGraphChange.R | 24 +-
fanovaGraph-1.3/fanovaGraph/R/plotiGraph.R | 66 +++++---
fanovaGraph-1.3/fanovaGraph/R/simAdd.R | 8
fanovaGraph-1.3/fanovaGraph/R/threshold.R | 29 ++-
fanovaGraph-1.3/fanovaGraph/demo/Estimation.R | 10 -
fanovaGraph-1.3/fanovaGraph/demo/Example6D.R | 34 ++--
fanovaGraph-1.3/fanovaGraph/demo/ExampleIshigami.R | 34 ++--
fanovaGraph-1.3/fanovaGraph/demo/Threshold.R | 34 +---
fanovaGraph-1.3/fanovaGraph/man/MLoptimConstrained.Rd | 2
fanovaGraph-1.3/fanovaGraph/man/estimateGraph.Rd | 24 ++
fanovaGraph-1.3/fanovaGraph/man/kmPredictWrapper.Rd |only
fanovaGraph-1.3/fanovaGraph/man/plotDeltaJumps.Rd |only
fanovaGraph-1.3/fanovaGraph/man/plotGraphChange.Rd | 29 ---
fanovaGraph-1.3/fanovaGraph/man/plotiGraph.Rd | 58 ++++---
fanovaGraph-1.3/fanovaGraph/man/simAdd.Rd | 2
fanovaGraph-1.3/fanovaGraph/man/threshold.Rd | 44 +++--
fanovaGraph-1.3/fanovaGraph/man/yhat.Rd | 2
34 files changed, 427 insertions(+), 340 deletions(-)
Title: Models of Soil Organic Matter Decomposition
Diff between SoilR versions 1.0-0 dated 2012-04-01 and 1.0-2 dated 2012-07-20
Description: This package contains functions for modeling Soil Organic
Matter decomposition in terrestrial ecosystems.
Author: Carlos A. Sierra
Maintainer: Markus Mueller
SoilR-1.0-0/SoilR/R/GeneralModel14.R |only
SoilR-1.0-0/SoilR/R/RespirationCoefficients.R |only
SoilR-1.0-0/SoilR/R/correctnessOfModel.R |only
SoilR-1.0-0/SoilR/data/lambda.rda |only
SoilR-1.0-0/SoilR/inst/doc/.RData |only
SoilR-1.0-0/SoilR/inst/doc/.Rhistory |only
SoilR-1.0-0/SoilR/inst/tests/Rplots.pdf |only
SoilR-1.0-0/SoilR/inst/tests/runit.OnePool_C14_ZeroDecay_Zero.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.FourpSerial_1.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.ThreepFeedback_1.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.ThreepSerial_1.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.ThreepSerial_2.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.TwopParallel_ZeroDecayInputOnly.R |only
SoilR-1.0-0/SoilR/inst/tests/runit.test.automatic.TwopParallel_constantInput.R |only
SoilR-1.0-0/SoilR/inst/tests/test.R |only
SoilR-1.0-0/SoilR/man/getRelease.Rd |only
SoilR-1.0-0/SoilR/man/getRelease14.Rd |only
SoilR-1.0-0/SoilR/man/lambda.Rd |only
SoilR-1.0-2/SoilR/DESCRIPTION | 11
SoilR-1.0-2/SoilR/MD5 | 164 ++-
SoilR-1.0-2/SoilR/NAMESPACE | 7
SoilR-1.0-2/SoilR/R/1_RespirationCoefficients.R |only
SoilR-1.0-2/SoilR/R/1_TimeMap.R |only
SoilR-1.0-2/SoilR/R/1_deSolve.lsoda.wrapper.R |only
SoilR-1.0-2/SoilR/R/DecompositionOperator.R |only
SoilR-1.0-2/SoilR/R/GeneralModel.R | 19
SoilR-1.0-2/SoilR/R/GeneralModel_14.R |only
SoilR-1.0-2/SoilR/R/HIV_R.R |only
SoilR-1.0-2/SoilR/R/InputFlux.R |only
SoilR-1.0-2/SoilR/R/Model.R | 460 ++--------
SoilR-1.0-2/SoilR/R/Model_14.R |only
SoilR-1.0-2/SoilR/R/NpYdot.R | 4
SoilR-1.0-2/SoilR/R/OnepModel.R | 2
SoilR-1.0-2/SoilR/R/OnepModel14.R |only
SoilR-1.0-2/SoilR/R/ParallelModel.R | 4
SoilR-1.0-2/SoilR/R/RothCModel.R | 2
SoilR-1.0-2/SoilR/R/ThreepFeedbackModel14.R |only
SoilR-1.0-2/SoilR/R/ThreepParallelModel14.R |only
SoilR-1.0-2/SoilR/R/ThreepSeriesModel.R | 3
SoilR-1.0-2/SoilR/R/ThreepSeriesModel14.R |only
SoilR-1.0-2/SoilR/R/TwopFeedbackModel14.R |only
SoilR-1.0-2/SoilR/R/TwopParallelModel.R | 3
SoilR-1.0-2/SoilR/R/TwopParallelModel14.R |only
SoilR-1.0-2/SoilR/R/TwopSeriesModel.R | 3
SoilR-1.0-2/SoilR/R/TwopSeriesModel14.R |only
SoilR-1.0-2/SoilR/R/fT.Standcarb.R | 2
SoilR-1.0-2/SoilR/R/fW.Standcarb.R | 2
SoilR-1.0-2/SoilR/data/C14Atm.rda |binary
SoilR-1.0-2/SoilR/data/C14Atm_NH.rda |binary
SoilR-1.0-2/SoilR/data/CourseExample_R14.rda |only
SoilR-1.0-2/SoilR/data/DataC.rda |only
SoilR-1.0-2/SoilR/data/DataI.rda |only
SoilR-1.0-2/SoilR/data/DataR14.rda |only
SoilR-1.0-2/SoilR/data/HarvardForest14CO2.rda |only
SoilR-1.0-2/SoilR/inst/doc/Course.Rnw |only
SoilR-1.0-2/SoilR/inst/doc/Course.pdf |only
SoilR-1.0-2/SoilR/inst/doc/GeneralModel.Rnw | 14
SoilR-1.0-2/SoilR/inst/doc/GeneralModel.pdf |binary
SoilR-1.0-2/SoilR/inst/extdata/CourseExample_R14.rda |only
SoilR-1.0-2/SoilR/inst/tests/C14example.py |only
SoilR-1.0-2/SoilR/inst/tests/FeM2.R |only
SoilR-1.0-2/SoilR/inst/tests/Manzoniexample.py |only
SoilR-1.0-2/SoilR/inst/tests/Rexample.py |only
SoilR-1.0-2/SoilR/inst/tests/RexampleWithTransfer.py |only
SoilR-1.0-2/SoilR/inst/tests/Rtest.R |only
SoilR-1.0-2/SoilR/inst/tests/c14test.R |only
SoilR-1.0-2/SoilR/inst/tests/fme.f90 |only
SoilR-1.0-2/SoilR/inst/tests/functions.py |only
SoilR-1.0-2/SoilR/inst/tests/mmtestmaker.py |only
SoilR-1.0-2/SoilR/inst/tests/prolog.R | 30
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.FourpSerial_1.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.Manzoni.TwopFeedback.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.Manzoni.TwopParallel.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.Manzoni.TwopSeriell.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.Manzoni.op.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.ThreepFeedback_1.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.ThreepSerial_1.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.ThreepSerial_2.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.TwopParallel_ZeroDecayInputOnly.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.TwopParallel_ZeroInput.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.TwopParallel_constantInput.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.c14.OnePool_C14_ZeroDecay_Zero.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.c14.OnePool_C14_ZeroDecay_constantInputrate.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.c14.OnePool_C14_equalDecay_ZeroInput.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.automatic.c14.TwoPool_C14_equalDecay_ZeroInput.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.manual.help.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.manuel.Manzoni.op.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.test.FEM.R |only
SoilR-1.0-2/SoilR/inst/tests/runit.test.Model.R | 31
SoilR-1.0-2/SoilR/inst/tests/runit.test.checkSizes.R |only
SoilR-1.0-2/SoilR/inst/tests/test.paramest.R |only
SoilR-1.0-2/SoilR/inst/tests/testmaker.py | 448 ++-------
SoilR-1.0-2/SoilR/inst/tests/tryCatch.R |only
SoilR-1.0-2/SoilR/man/CourseExample_R14.Rd |only
SoilR-1.0-2/SoilR/man/DataC.Rd |only
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SoilR-1.0-2/SoilR/man/DataR14.Rd |only
SoilR-1.0-2/SoilR/man/DecompositionOperator-class.Rd |only
SoilR-1.0-2/SoilR/man/GeneralModel.Rd | 8
SoilR-1.0-2/SoilR/man/GeneralModel_14.Rd | 144 ++-
SoilR-1.0-2/SoilR/man/HIV_R.Rd |only
SoilR-1.0-2/SoilR/man/HarvardForest14CO2.Rd |only
SoilR-1.0-2/SoilR/man/InputFlux-class.Rd |only
SoilR-1.0-2/SoilR/man/Model-class.Rd | 4
SoilR-1.0-2/SoilR/man/Model_14-class.Rd | 12
SoilR-1.0-2/SoilR/man/Models.Rd |only
SoilR-1.0-2/SoilR/man/NpYdot.Rd | 4
SoilR-1.0-2/SoilR/man/OnepModel.Rd | 2
SoilR-1.0-2/SoilR/man/OnepModel14.Rd |only
SoilR-1.0-2/SoilR/man/ParallelModel.Rd | 4
SoilR-1.0-2/SoilR/man/SoilR-package.Rd | 6
SoilR-1.0-2/SoilR/man/ThreepFeedbackModel14.Rd |only
SoilR-1.0-2/SoilR/man/ThreepParallelModel14.Rd |only
SoilR-1.0-2/SoilR/man/ThreepSeriesModel.Rd | 4
SoilR-1.0-2/SoilR/man/ThreepSeriesModel14.Rd |only
SoilR-1.0-2/SoilR/man/TimeMap-class.Rd | 3
SoilR-1.0-2/SoilR/man/TimeMap.from.Dataframe.Rd | 5
SoilR-1.0-2/SoilR/man/TwopFeedbackModel14.Rd |only
SoilR-1.0-2/SoilR/man/TwopParallelModel.Rd | 4
SoilR-1.0-2/SoilR/man/TwopParallelModel14.Rd |only
SoilR-1.0-2/SoilR/man/TwopSeriesModel.Rd | 4
SoilR-1.0-2/SoilR/man/TwopSeriesModel14.Rd |only
SoilR-1.0-2/SoilR/man/correctnessOfModel.Rd | 7
SoilR-1.0-2/SoilR/man/fW.Century.Rd | 2
SoilR-1.0-2/SoilR/man/getAccumulatedRelease.Rd |only
SoilR-1.0-2/SoilR/man/getAccumulatedRelease14.Rd |only
SoilR-1.0-2/SoilR/man/getMeanTransitTime.Rd |only
SoilR-1.0-2/SoilR/man/getReleaseFlux14.Rd |only
SoilR-1.0-2/SoilR/man/getSoilC14Fraction.Rd |only
SoilR-1.0-2/SoilR/man/getTotalC14CRatio.Rd |only
SoilR-1.0-2/SoilR/man/getTotalReleaseFluxC14CRatio.Rd |only
SoilR-1.0-2/SoilR/man/getTransitTimeDistributionDensity.Rd |only
132 files changed, 577 insertions(+), 845 deletions(-)
Title: Metabolomic Univariate and Multivariate Analysis
Diff between muma versions 1.2 dated 2012-05-24 and 1.3 dated 2012-07-20
Description: Preprocessing of metabolomic data (normalization and
scalings); Principal Component Analysis with help tool for
choosing best-separating principal components and automatic
outlier testing; automatic univariate analysis for parametric
and non-parametric data, with report generation (volcano and
box plots); partial least sqaure discriminant analysis
(PLS-DA); orthogonal partial least square discriminant analysis
(OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY);
Ratio Analysis NMR SpectroscopY (RANSY).
Author: Edoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos,
Silvia Mari, Andrea Spitaleri and Michela Ghitti
Maintainer: Edoardo gaude
DESCRIPTION | 8 ++++----
MD5 | 48 ++++++++++++++++++++++++------------------------
R/Plot.pca.pvalues.R | 2 +-
R/explore.data.R | 4 ++++
R/oplsda.R | 12 ++++++++++--
R/plsda.R | 19 +++++++++++++++++++
R/pvalues.R | 2 ++
R/univariate.R | 12 ++++++++----
man/Plot.pca.pvalues.Rd | 2 +-
man/Plot.pca.score.Rd | 2 +-
man/Plot.plsda.Rd | 3 ---
man/explore.data.Rd | 5 +++++
man/muma-package.Rd | 6 +++---
man/oplsda.Rd | 19 ++++++++++++++-----
man/ostocsy.Rd | 2 +-
man/outlier.Rd | 4 ++--
man/plsda.Rd | 47 +++++++++++++++++++++++++++++++++++++----------
man/pvalues.Rd | 2 ++
man/ransy.Rd | 8 ++++----
man/stocsy.1d.Rd | 8 ++++----
man/stocsy.Rd | 4 ++--
man/univariate.Rd | 20 +++++++++++++++-----
man/volcano.Rd | 3 ---
man/welch.Rd | 3 ---
man/wmw.Rd | 3 ---
25 files changed, 163 insertions(+), 85 deletions(-)
Title: Fraction Proliferation via a quiescent growth model
Diff between fracprolif versions 1.0.3 dated 2012-07-12 and 1.0.4 dated 2012-07-20
Description: Functions for fitting data to a quiescent growth model,
i.e. a growth process that involves members of the population
who stop dividing or propagating.
Author: Shawn Garbett, Darren Tyson
Maintainer: Shawn Garbett
fracprolif-1.0.3/fracprolif/.Rapp.history |only
fracprolif-1.0.3/fracprolif/data/.Rapp.history |only
fracprolif-1.0.4/fracprolif/DESCRIPTION | 8 ++++----
fracprolif-1.0.4/fracprolif/MD5 | 10 +++++-----
fracprolif-1.0.4/fracprolif/R/q.rates.R | 13 +++++++++++--
fracprolif-1.0.4/fracprolif/man/fracprolif-package.Rd | 6 +++---
fracprolif-1.0.4/fracprolif/man/q.rates.Rd | 8 ++++++--
fracprolif-1.0.4/fracprolif/man/qrate-class.Rd | 1 +
8 files changed, 30 insertions(+), 16 deletions(-)
Title: Log-Gaussian Cox Process
Diff between lgcp versions 0.9-5 dated 2012-06-11 and 0.9-7 dated 2012-07-20
Description: Spatial and spatio-temporal modelling of point patterns
using the log-Gaussian Cox process
Author: B. M. Taylor, T. M. Davies, B. S. Rowlingson, P. J. Diggle
Maintainer: Benjamin M. Taylor
lgcp-0.9-5/lgcp/inst/doc/LGCP_bibliography.bib |only
lgcp-0.9-5/lgcp/inst/doc/lgcp.Rtex |only
lgcp-0.9-5/lgcp/inst/doc/pdf |only
lgcp-0.9-5/lgcp/inst/doc/png |only
lgcp-0.9-7/lgcp/DESCRIPTION | 12
lgcp-0.9-7/lgcp/MD5 | 78 +-
lgcp-0.9-7/lgcp/NAMESPACE | 7
lgcp-0.9-7/lgcp/R/getCounts.R | 32 +
lgcp-0.9-7/lgcp/R/lgcpForecast.R | 9
lgcp-0.9-7/lgcp/R/lgcpMethods.R | 276 +++++++++-
lgcp-0.9-7/lgcp/R/lgcpPredictSpatial.R | 22
lgcp-0.9-7/lgcp/R/lgcpPredictSpatioTemporal.R | 27
lgcp-0.9-7/lgcp/R/parameterEstimation.R | 16
lgcp-0.9-7/lgcp/R/spatialOnly.R | 34 +
lgcp-0.9-7/lgcp/R/temporalAtRiskClassDef.R | 8
lgcp-0.9-7/lgcp/inst/doc/lgcp.Rnw |only
lgcp-0.9-7/lgcp/inst/doc/lgcp.pdf |binary
lgcp-0.9-7/lgcp/man/MALAlgcp.Rd | 7
lgcp-0.9-7/lgcp/man/MALAlgcpSpatial.Rd | 7
lgcp-0.9-7/lgcp/man/as-dot-SpatialPixelsDataFrame-dot-lgcpgrid.Rd |only
lgcp-0.9-7/lgcp/man/as-dot-SpatialPixelsDataFrame.Rd |only
lgcp-0.9-7/lgcp/man/autocorr.Rd |only
lgcp-0.9-7/lgcp/man/extract.Rd | 3
lgcp-0.9-7/lgcp/man/getCellCounts.Rd |only
lgcp-0.9-7/lgcp/man/lgcpgrid-dot-array.Rd | 6
lgcp-0.9-7/lgcp/man/lgcpgrid-dot-list.Rd | 8
lgcp-0.9-7/lgcp/man/lgcpgrid-dot-matrix.Rd | 5
lgcp-0.9-7/lgcp/man/lgcpgrid.Rd | 11
lgcp-0.9-7/lgcp/man/plot-dot-lgcpAutocorr.Rd |only
lgcp-0.9-7/lgcp/man/plot-dot-lgcpQuantiles.Rd | 2
lgcp-0.9-7/lgcp/man/plotExceed.Rd | 1
lgcp-0.9-7/lgcp/man/raster-dot-lgcpgrid.Rd |only
lgcp-0.9-7/lgcp/man/rgauss.Rd |only
lgcp-0.9-7/lgcp/man/spatialparsEst.Rd | 9
lgcp-0.9-7/lgcp/man/temporalAtRisk-dot-function.Rd | 2
lgcp-0.9-7/lgcp/tests/lgcpMethodsTest.R |only
36 files changed, 477 insertions(+), 105 deletions(-)
Title: Generalized Nonlinear Models
Diff between gnm versions 1.0-2 dated 2012-05-21 and 1.0-3 dated 2012-07-20
Description: Functions to specify and fit generalized nonlinear models,
including models with multiplicative interaction terms such as
the UNIDIFF model from sociology and the AMMI model from crop
science, and many others. Over-parameterized representations
of models are used throughout; functions are provided for
inference on estimable parameter combinations, as well as
standard methods for diagnostics etc.
Author: Heather Turner and David Firth
Maintainer: Heather Turner
gnm-1.0-2/gnm/R/Nonlin.R |only
gnm-1.0-2/gnm/R/getModelFrame.R |only
gnm-1.0-2/gnm/R/qrSolve.R |only
gnm-1.0-2/gnm/man/getModelFrame-deprecated.Rd |only
gnm-1.0-2/gnm/man/gnm-deprecated.Rd |only
gnm-1.0-2/gnm/man/qrSolve-deprecated.Rd |only
gnm-1.0-3/gnm/DESCRIPTION | 9 +-
gnm-1.0-3/gnm/MD5 | 103 ++++++++++++--------------
gnm-1.0-3/gnm/NAMESPACE | 4 -
gnm-1.0-3/gnm/R/Dref.R | 4 +
gnm-1.0-3/gnm/R/anova.gnm.R | 17 ++--
gnm-1.0-3/gnm/R/coef.gnm.R | 2
gnm-1.0-3/gnm/R/glm.fit.e.R | 8 +-
gnm-1.0-3/gnm/R/gnm-defunct.R |only
gnm-1.0-3/gnm/R/gnm.R | 38 +++++++--
gnm-1.0-3/gnm/R/gnmFit.R | 73 ++++++++++--------
gnm-1.0-3/gnm/R/gnmTools.R | 16 +---
gnm-1.0-3/gnm/R/hatvalues.gnm.R | 14 ++-
gnm-1.0-3/gnm/R/meanResiduals.R | 77 +++++--------------
gnm-1.0-3/gnm/R/nonlinTerms.R | 6 -
gnm-1.0-3/gnm/R/pickCoef.R | 13 ++-
gnm-1.0-3/gnm/R/print.meanResiduals.R | 8 +-
gnm-1.0-3/gnm/R/residSVD.R | 2
gnm-1.0-3/gnm/R/summary.meanResiduals.R | 20 ++---
gnm-1.0-3/gnm/R/termPredictors.gnm.R | 14 ++-
gnm-1.0-3/gnm/R/update.gnm.R | 2
gnm-1.0-3/gnm/data/House2001.rda |binary
gnm-1.0-3/gnm/data/backPain.rda |binary
gnm-1.0-3/gnm/data/barley.rda |binary
gnm-1.0-3/gnm/data/barleyHeights.rda |binary
gnm-1.0-3/gnm/data/cautres.rda |binary
gnm-1.0-3/gnm/data/erikson.rda |binary
gnm-1.0-3/gnm/data/friend.rda |binary
gnm-1.0-3/gnm/data/mentalHealth.rda |binary
gnm-1.0-3/gnm/data/voting.rda |binary
gnm-1.0-3/gnm/data/wheat.rda |binary
gnm-1.0-3/gnm/data/yaish.rda |binary
gnm-1.0-3/gnm/inst/NEWS | 26 ++++++
gnm-1.0-3/gnm/inst/doc/gnmOverview.Rnw | 1
gnm-1.0-3/gnm/inst/doc/gnmOverview.pdf |binary
gnm-1.0-3/gnm/man/gnm-defunct.Rd | 17 +++-
gnm-1.0-3/gnm/man/meanResiduals.Rd | 9 ++
gnm-1.0-3/gnm/man/pickCoef.Rd | 59 +++++++++++---
gnm-1.0-3/gnm/tests/RC.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/RChomog.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/biplot.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/bwt.Rout.save | 55 +++++++------
gnm-1.0-3/gnm/tests/diagonalRef.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/doubleUnidiff.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/gammi.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/logexcess.Rout.save | 5 -
gnm-1.0-3/gnm/tests/logistic.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/nls.Rout.save | 7 +
gnm-1.0-3/gnm/tests/stereotype.Rout.save | 9 +-
gnm-1.0-3/gnm/tests/unidiff.Rout.save | 9 +-
gnm-1.0-3/gnm/vignettes/gnmOverview.Rnw | 1
56 files changed, 415 insertions(+), 276 deletions(-)
Title: JAR dependencies for the XLConnect package
Diff between XLConnectJars versions 0.1-4 dated 2012-02-11 and 0.2-0 dated 2012-07-20
Description: This package provides external JAR dependencies for the
XLConnect package
Author: Mirai Solutions GmbH
Maintainer: Martin Studer
XLConnectJars-0.1-4/XLConnectJars/.project |only
XLConnectJars-0.1-4/XLConnectJars/inst/java/poi-3.8-beta5.jar |only
XLConnectJars-0.1-4/XLConnectJars/inst/java/poi-ooxml-3.8-beta5.jar |only
XLConnectJars-0.2-0/XLConnectJars/DESCRIPTION | 12 +++++-----
XLConnectJars-0.2-0/XLConnectJars/MD5 | 10 ++++----
XLConnectJars-0.2-0/XLConnectJars/NEWS | 3 ++
XLConnectJars-0.2-0/XLConnectJars/inst/java/poi-3.8.jar |only
XLConnectJars-0.2-0/XLConnectJars/inst/java/poi-ooxml-3.8.jar |only
XLConnectJars-0.2-0/XLConnectJars/man/XLConnectJars-package.Rd | 6 ++---
9 files changed, 17 insertions(+), 14 deletions(-)
Title: Excel Connector for R
Diff between XLConnect versions 0.1-9 dated 2012-03-09 and 0.2-0 dated 2012-07-20
Description: Manipulate Excel files from R
Author: Mirai Solutions GmbH
Maintainer: Martin Studer
XLConnect-0.1-9/XLConnect/.project |only
XLConnect-0.1-9/XLConnect/inst/java/XLConnect-0.1-8-sources.jar |only
XLConnect-0.1-9/XLConnect/inst/java/XLConnect-0.1-8.jar |only
XLConnect-0.2-0/XLConnect/DESCRIPTION | 20 -
XLConnect-0.2-0/XLConnect/MD5 | 131 +++++-----
XLConnect-0.2-0/XLConnect/NAMESPACE | 4
XLConnect-0.2-0/XLConnect/NEWS | 21 +
XLConnect-0.2-0/XLConnect/R/cellstyle.setBorder.R | 2
XLConnect-0.2-0/XLConnect/R/cellstyle.setDataFormat.R | 2
XLConnect-0.2-0/XLConnect/R/cellstyle.setFillPattern.R | 2
XLConnect-0.2-0/XLConnect/R/cellstyle.setWrapText.R | 2
XLConnect-0.2-0/XLConnect/R/dataframeFromJava.R | 4
XLConnect-0.2-0/XLConnect/R/workbook.addImage.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.appendNamedRegion.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.appendWorksheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.cloneSheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.createFreezePane.R |only
XLConnect-0.2-0/XLConnect/R/workbook.createName.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.createSheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.createSplitPane.R |only
XLConnect-0.2-0/XLConnect/R/workbook.existsName.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.existsSheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.getCellFormula.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.getCellStyle.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.getDefinedNames.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.getReferenceCoordinates.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.getReferenceFormula.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.hideSheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.mergeCells.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.onErrorCell.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.readNamedRegion.R | 9
XLConnect-0.2-0/XLConnect/R/workbook.readWorksheet.R | 22 +
XLConnect-0.2-0/XLConnect/R/workbook.removeName.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.removePane.R |only
XLConnect-0.2-0/XLConnect/R/workbook.renameSheet.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setAutoFilter.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setCellFormula.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setCellStyle.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setColumnWidth.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setDataFormatForType.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setForceFormulaRecalculation.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setRowHeight.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setSheetColor.R |only
XLConnect-0.2-0/XLConnect/R/workbook.setStyleAction.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.setStyleNamePrefix.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.unmergeCells.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.writeNamedRegion.R | 2
XLConnect-0.2-0/XLConnect/R/workbook.writeWorksheet.R | 2
XLConnect-0.2-0/XLConnect/R/writeWorksheetToFile.R | 5
XLConnect-0.2-0/XLConnect/inst/XLConnect.R |only
XLConnect-0.2-0/XLConnect/inst/doc/XLConnect.Rnw | 49 ++-
XLConnect-0.2-0/XLConnect/inst/doc/XLConnect.pdf |binary
XLConnect-0.2-0/XLConnect/inst/java/XLConnect-0.2-0-sources.jar |only
XLConnect-0.2-0/XLConnect/inst/java/XLConnect-0.2-0.jar |only
XLConnect-0.2-0/XLConnect/inst/unitTests/resources/testWorkbookReadNamedRegion.xls |binary
XLConnect-0.2-0/XLConnect/inst/unitTests/resources/testWorkbookReadNamedRegion.xlsx |binary
XLConnect-0.2-0/XLConnect/inst/unitTests/resources/testWorkbookReadWorksheet.xls |binary
XLConnect-0.2-0/XLConnect/inst/unitTests/resources/testWorkbookReadWorksheet.xlsx |binary
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.dataframeConversion.R | 56 ++--
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.dumpAndRestore.R | 40 +--
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.workbook.readNamedRegion.R | 38 ++
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.workbook.readWorksheet.R | 38 ++
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.writeAndReadNamedRegion.R | 90 +++---
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.writeAndReadWorksheet.R | 90 +++---
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.writeNamedRegionToFile.R | 90 +++---
XLConnect-0.2-0/XLConnect/inst/unitTests/runit.writeWorksheetToFile.R | 90 +++---
XLConnect-0.2-0/XLConnect/man/XLConnect-package.Rd | 8
XLConnect-0.2-0/XLConnect/man/createFreezePane-methods.Rd |only
XLConnect-0.2-0/XLConnect/man/createSplitPane-methods.Rd |only
XLConnect-0.2-0/XLConnect/man/readNamedRegion-methods.Rd | 5
XLConnect-0.2-0/XLConnect/man/readWorksheet-methods.Rd | 10
XLConnect-0.2-0/XLConnect/man/removePane-methods.Rd |only
XLConnect-0.2-0/XLConnect/man/setSheetColor-methods.Rd |only
XLConnect-0.2-0/XLConnect/tests/run_tests.R | 6
74 files changed, 533 insertions(+), 361 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 0.9-9 dated 2012-07-18 and 0.9-10 dated 2012-07-20
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies. See
function known.designs() for study designs covered. Moreover
the package contains functions for power and sample size based
on 'expected' power in case of uncertain (estimated)
variability. ----- Added are functions for the power and
sample size for the ratio of two means with normally
distributed data on the original scale (based on Fieller's
confidence ('fiducial') interval). ----- Contains further
functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but
eventually useful if the question of 'non-superiority' must be
evaluated. The power and sample size calculations based on
non-inferiority test may also performed via 'expected' power in
case of uncertain (estimated) variability.
Author: Detlew Labes
Maintainer: D. Labes
DESCRIPTION | 8 +++----
MD5 | 18 +++++++--------
NEWS | 6 +++++
R/DesignHelpers.R | 2 -
R/OwensQ.R | 53 +++++++++++++++++++++++++++++++++--------------
R/SampleSize.R | 7 +++---
R/SampleSize_noninf.R | 4 ++-
R/expSampleSize.R | 7 +++---
R/expSampleSize_noninf.R | 4 ++-
man/PowerTOST-package.Rd | 4 +--
10 files changed, 74 insertions(+), 39 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Diff between mgcv versions 1.7-18 dated 2012-06-12 and 1.7-19 dated 2012-07-20
Description: Routines for GAMs and other generalized ridge regression
with multiple smoothing parameter selection by GCV, REML or
UBRE/AIC. Also GAMMs. Includes a gam() function.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 6
MD5 | 38 +--
R/bam.r | 38 ++-
R/fast-REML.r | 3
R/gam.fit3.r | 9
R/gamm.r | 357 ++-------------------------------
R/mgcv.r | 342 ++++++++++++++++++++++++-------
R/smooth.r | 96 +++++++-
changeLog | 41 +++
man/anova.gam.Rd | 29 ++
man/fixDependence.Rd | 12 -
man/gamObject.Rd | 6
man/gamm.Rd | 1
man/magic.Rd | 4
man/mgcv-FAQ.Rd | 2
man/smooth.construct.tp.smooth.spec.Rd | 4
man/summary.gam.Rd | 59 +++--
man/t2.Rd | 10
src/magic.c | 11 -
src/mgcv.h | 1
20 files changed, 572 insertions(+), 497 deletions(-)
Title: Generalized additive mixed models using mgcv and lme4
Diff between gamm4 versions 0.1-5 dated 2011-10-10 and 0.1-6 dated 2012-07-20
Description: Fit generalized additive mixed models via a version of
mgcv's gamm function, using lme4 for estimation via Fabian
Scheipl's trick.
Author: Simon Wood
Maintainer: Simon Wood
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/gamm4.r | 43 +++++++++++++++++++++++++++++++------------
changeLog | 9 +++++++++
4 files changed, 46 insertions(+), 18 deletions(-)