Title: Beta Regression
Diff between betareg versions 3.0-0 dated 2012-05-08 and 3.0-1 dated 2012-07-22
Description: Beta regression for modeling beta-distributed dependent
variables, e.g., rates and proportions. In addition to maximum
likelihood regression (for both mean and precision of a
beta-distributed response), bias-corrected and bias-reduced
estimation as well as finite mixture models and recursive
partitioning for beta regressions are provided.
Author: Achim Zeileis [aut, cre], Francisco Cribari-Neto [aut], Bettina
Gruen [aut], Ioannis Kosmidis [aut], Alexandre B. Simas [ctb]
(earlier version by), Andrea V. Rocha [ctb] (earlier version
by)
Maintainer: Achim Zeileis
DESCRIPTION | 18 +++----
MD5 | 28 ++++++------
NEWS | 5 ++
R/betareg.R | 2
data/CarTask.rda |binary
data/FoodExpenditure.rda |binary
data/GasolineYield.rda |binary
data/ImpreciseTask.rda |binary
data/MockJurors.rda |binary
data/ReadingSkills.rda |binary
data/StressAnxiety.rda |binary
data/WeatherTask.rda |binary
inst/doc/betareg-ext.pdf |binary
inst/doc/betareg.pdf |binary
tests/Examples/betareg-Ex.Rout.save | 84 +++++++++++++++++-------------------
15 files changed, 70 insertions(+), 67 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2005-03-09 0.8-01
Title: R interface to the Java Chinese word segmentation system of
mmseg4j
Diff between rmmseg4j versions 0.1-0 dated 2012-06-18 and 0.2-0 dated 2012-07-22
Description: This package uses mmseg4j to provide a function to segment
a Chinese sentence into words which are separated by space. The
returned value can be processed by tm package directly.
Author: HUANG Ronggui
Maintainer: HUANG Ronggui
rmmseg4j-0.1-0/rmmseg4j/demo |only
rmmseg4j-0.2-0/rmmseg4j/DESCRIPTION | 10 ++---
rmmseg4j-0.2-0/rmmseg4j/MD5 | 13 +++----
rmmseg4j-0.2-0/rmmseg4j/R/Rmmseg4j.R | 12 ++++---
rmmseg4j-0.2-0/rmmseg4j/inst/java/Rmmseg4j.jar |binary
rmmseg4j-0.2-0/rmmseg4j/inst/java/src/Rmmseg4j/RmmsegComplex.java | 17 +++++++++-
rmmseg4j-0.2-0/rmmseg4j/inst/mmseg4jExample.R |only
rmmseg4j-0.2-0/rmmseg4j/man/mmseg4j.Rd | 14 ++------
8 files changed, 40 insertions(+), 26 deletions(-)
Title: Regularization paths for regression models with grouped
covariates
Diff between grpreg versions 2.0-0 dated 2012-07-21 and 2.0-1 dated 2012-07-22
Description: Efficient algorithms for fitting the regularization path
of linear or logistic regression models with grouped penalties,
such as group lasso, group MCP, and group SCAD. The algorithms
are based on the idea of either locally approximated coordinate
descent or group descent, depending on the penalty.
Author: Patrick Breheny
Maintainer: Patrick Breheny
DESCRIPTION | 9 ++++-----
MD5 | 12 ++++++------
R/cv.grpreg.R | 2 +-
R/grpreg.R | 2 +-
R/predict.R | 4 ++--
inst/tests/test.R | 52 ++++++++++++++++++++++++++++------------------------
tests/test-all.R | 10 +++++++---
7 files changed, 49 insertions(+), 42 deletions(-)
Title: Open Document Databases (.odb) management
Diff between ODB versions 1.0.0 dated 2011-06-17 and 1.1.0 dated 2012-07-22
Description: This package provides functions to create, connect, update
and query HSQL databases embedded in Open Document Databases
(.odb) files, as OpenOffice and LibreOffice do.
Author: Sylvain Mareschal
Maintainer: Sylvain Mareschal
ODB-1.0.0/ODB/R/odb-class.r |only
ODB-1.0.0/ODB/R/odb.zip.r |only
ODB-1.0.0/ODB/man/odb-class.Rd |only
ODB-1.0.0/ODB/man/odb.zip.Rd |only
ODB-1.1.0/ODB/DESCRIPTION | 13 -
ODB-1.1.0/ODB/MD5 |only
ODB-1.1.0/ODB/NAMESPACE |only
ODB-1.1.0/ODB/R/ODB-class.r |only
ODB-1.1.0/ODB/R/difftimeFmt.r |only
ODB-1.1.0/ODB/R/entities.r |only
ODB-1.1.0/ODB/R/isClosed.r | 56 ++++--
ODB-1.1.0/ODB/R/odb.close.r | 80 +++++++++
ODB-1.1.0/ODB/R/odb.comments_GET.r | 93 ++++++++++
ODB-1.1.0/ODB/R/odb.comments_SET.r | 115 +++++++++++++
ODB-1.1.0/ODB/R/odb.create.r | 96 ++++++-----
ODB-1.1.0/ODB/R/odb.export.r | 66 ++++---
ODB-1.1.0/ODB/R/odb.insert.r | 160 ++++++++++--------
ODB-1.1.0/ODB/R/odb.open.r | 290 ++++++++++++++++++----------------
ODB-1.1.0/ODB/R/odb.queries_GET.r | 86 +++++-----
ODB-1.1.0/ODB/R/odb.queries_SET.r | 169 ++++++++++---------
ODB-1.1.0/ODB/R/odb.read.r | 170 ++++++++++---------
ODB-1.1.0/ODB/R/odb.tables.r | 78 +++++++++
ODB-1.1.0/ODB/R/odb.write.r | 108 +++++++-----
ODB-1.1.0/ODB/R/progress-class.r |only
ODB-1.1.0/ODB/inst/NEWS.Rd |only
ODB-1.1.0/ODB/inst/tools/template.odb |binary
ODB-1.1.0/ODB/man/ODB-class.Rd |only
ODB-1.1.0/ODB/man/ODB-package.Rd | 190 +++++++++++-----------
ODB-1.1.0/ODB/man/difftimeFmt.Rd |only
ODB-1.1.0/ODB/man/isClosed.Rd | 96 +++++------
ODB-1.1.0/ODB/man/odb.close.Rd | 102 +++++------
ODB-1.1.0/ODB/man/odb.comments.Rd | 196 +++++++++++-----------
ODB-1.1.0/ODB/man/odb.create.Rd | 134 +++++++--------
ODB-1.1.0/ODB/man/odb.export.Rd | 104 ++++++------
ODB-1.1.0/ODB/man/odb.insert.Rd | 200 +++++++++++------------
ODB-1.1.0/ODB/man/odb.open.Rd | 114 ++++++-------
ODB-1.1.0/ODB/man/odb.queries.Rd | 148 ++++++++---------
ODB-1.1.0/ODB/man/odb.read.Rd | 152 +++++++++--------
ODB-1.1.0/ODB/man/odb.tables.Rd | 114 ++++++-------
ODB-1.1.0/ODB/man/odb.write.Rd | 120 +++++++-------
ODB-1.1.0/ODB/man/progress-class.Rd |only
41 files changed, 1876 insertions(+), 1374 deletions(-)
Title: Analysis of light based geolocator data
Diff between GeoLight versions 1.0 dated 2012-06-03 and 1.01 dated 2012-07-22
Description: The package provides basic functions for global
positioning based on light intensity measurements over time.
Positioning process includes the determination of sun events, a
discrimination of residency and movement periods, the
calibration of period-specific data and, finally, the
calculation of positions.
Author: Simeon Lisovski, Silke Bauer, Tamara Emmenegger
Maintainer: Simeon Lisovski
GeoLight-1.0/GeoLight/.Rapp.history |only
GeoLight-1.0/GeoLight/NEWS.R |only
GeoLight-1.0/GeoLight/R/i.sum.Cl.R |only
GeoLight-1.01/GeoLight/DESCRIPTION | 8
GeoLight-1.01/GeoLight/MD5 | 22 +-
GeoLight-1.01/GeoLight/NEWS |only
GeoLight-1.01/GeoLight/R/changeLight.R | 18 -
GeoLight-1.01/GeoLight/R/i.sum.cL.R |only
GeoLight-1.01/GeoLight/R/luxTrans.R |only
GeoLight-1.01/GeoLight/R/trip2kml.R |only
GeoLight-1.01/GeoLight/R/twilightCalc.R | 242 ++++++++-----------------
GeoLight-1.01/GeoLight/man/GeoLight-package.Rd | 9
GeoLight-1.01/GeoLight/man/changeLight.Rd | 7
GeoLight-1.01/GeoLight/man/glfTrans.Rd | 2
GeoLight-1.01/GeoLight/man/luxTrans.Rd |only
GeoLight-1.01/GeoLight/man/trip2kml.Rd |only
GeoLight-1.01/GeoLight/man/twilightCalc.Rd | 6
17 files changed, 125 insertions(+), 189 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-07-27 1.0.5
2010-11-26 1.0.3
2010-11-23 1.0.2
2010-06-23 1.0.1
2010-06-22 1.0
Title: a problem solving environment for fitting separable nonlinear
models in physics and chemistry applications
Diff between TIMP versions 1.10.1 dated 2011-04-24 and 1.10.2 dated 2012-07-22
Description: TIMP is a problem solving environment for fitting
separable nonlinear models to measurements arising in physics
and chemistry experiments, and has been extensively applied to
time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey Laptenok,
David Nicolaides, Ivo H.M. van Stokkum
Maintainer: Joris J. Snellenburg
TIMP-1.10.1/TIMP/Rplots.pdf |only
TIMP-1.10.2/TIMP/DESCRIPTION | 16 +++++++-------
TIMP-1.10.2/TIMP/MD5 |only
TIMP-1.10.2/TIMP/R/barplot3.R | 2 -
TIMP-1.10.2/TIMP/R/calcD.R | 2 -
TIMP-1.10.2/TIMP/R/fitModel.R | 8 +++----
TIMP-1.10.2/TIMP/R/getCoh.R | 29 +++++++++++++++++++++-----
TIMP-1.10.2/TIMP/R/getStdErrClp.R | 16 +++++++-------
TIMP-1.10.2/TIMP/R/set_initModelClass_amp.R | 7 ++++--
TIMP-1.10.2/TIMP/R/set_initModelClass_kin.R | 7 +++++-
TIMP-1.10.2/TIMP/R/set_initModelClass_spec.R | 6 ++++-
TIMP-1.10.2/TIMP/R/summary.R | 6 ++---
TIMP-1.10.2/TIMP/R/zzz.R | 4 +--
TIMP-1.10.2/TIMP/data/denS4.rda |binary
TIMP-1.10.2/TIMP/data/denS5.rda |binary
TIMP-1.10.2/TIMP/data/donorAcceptorTagged.rda |binary
TIMP-1.10.2/TIMP/data/donorTagged.rda |binary
TIMP-1.10.2/TIMP/data/mea_IRF.rda |binary
TIMP-1.10.2/TIMP/data/target.rda |binary
TIMP-1.10.2/TIMP/man/kin-class.Rd | 2 -
20 files changed, 68 insertions(+), 37 deletions(-)
Title: Non-supervised Regional Frequency Analysis
Diff between nsRFA versions 0.7-3 dated 2012-04-04 and 0.7-4 dated 2012-07-22
Description: A collection of statistical tools for objective
(non-supervised) applications of the Regional Frequency
Analysis methods in hydrology. The package refers to the
index-value method and, more precisely, helps the hydrologist
to: (1) regionalize the index-value; (2) form homogeneous
regions with similar growth curves; (3) fit distribution
functions to the empirical regional growth curves.
Author: Alberto Viglione
Maintainer: Alberto Viglione
DESCRIPTION | 6 +++---
MD5 | 20 ++++++++++----------
data/FEH1000.RData |binary
data/functionsLaio.RData |binary
data/hydroSIMN.RData |binary
demo/rfa_annualflows02.R | 4 ++--
inst/doc/Fig11GriffisStedinger.pdf |binary
inst/doc/Fig1ElamirSeheult.pdf |binary
inst/doc/MSClaio2008.pdf |binary
inst/doc/nsRFA_ex01.pdf |binary
inst/doc/nsRFA_ex02.pdf |binary
11 files changed, 15 insertions(+), 15 deletions(-)
Title: Parallel Computing Toolset for Genome-Wide Association Studies
(GWAS)
Diff between SNPRelate versions 0.9.5 dated 2012-04-25 and 0.9.6 dated 2012-07-22
Description: A high-performance computing toolset for relatedness and
principal component analysis in GWAS
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
DESCRIPTION | 10 +-
MD5 | 37 ++++----
R/main.r | 177 ++++++++++++++++++++++++++++++++++++++++--
inst/doc |only
inst/extdata/sequence.vcf |only
man/SNPRelate-package.Rd | 14 +--
man/snpgdsBED2GDS.Rd | 3
man/snpgdsIBDMLE.Rd | 23 ++++-
man/snpgdsIBDMLELogLik.Rd | 23 -----
man/snpgdsIBDMoM.Rd | 11 +-
man/snpgdsPairIBD.Rd | 4
man/snpgdsPairIBDMLELogLik.Rd | 33 -------
man/snpgdsVCF2GDS.Rd |only
src/CoreDEF.h | 60 ++++++--------
src/Makevars | 2
src/dGWASMath.h | 3
src/dType.h | 83 +++++++++----------
src/dVect.cpp | 16 +--
src/dVect.h | 68 ++++++++--------
src/genIBS.cpp | 12 +-
src/main.cpp | 16 ++-
21 files changed, 365 insertions(+), 230 deletions(-)
Title: Information Tools for analyze Skew-Elliptical distributions and
related models
Diff between skewtools versions 0.1.0 dated 2012-04-04 and 0.1.1 dated 2012-07-22
Description: This package include functions related to following
topics: 1. Information Theory: Shannon Entropy and
Kullback-Leibler divergence for Multivariate Skew-Elliptical
distributions. 2. Estimation of Growth models parameters (Von
Bertalanffy, Gompertz, Logistic and Richards) using the robust
ECME method via Heteroscedastic Nonlinear Regression Growth
model with scale mixture of Skew-Normal distributions (Normal,
T-Student, Skew-Normal and Skew-t). Include Bootstrap and
Jackknife methods to estimate the Variance-Covariance matrix
and Local Influence
Author: Javier E. Contreras-Reyes
Maintainer: Javier E. Contreras-Reyes
DESCRIPTION | 30 +++++++++++++++---------------
MD5 | 15 ++++++++++-----
NAMESPACE | 4 ++--
R/Jsn.test.r |only
R/KL.sn.R |only
R/age.sign.r |only
man/Jsn.test.Rd |only
man/KL.sn.Rd |only
man/entropy.skew.Rd | 4 ++--
man/infl.growth.Rd | 4 ++--
man/skewtools-package.Rd | 4 +++-
11 files changed, 34 insertions(+), 27 deletions(-)
Title: Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Diff between rsem versions 0.2 dated 2011-12-13 and 0.3.1 dated 2012-07-22
Description: This package estimates means and covariance matrix of
multiple variables with missing data using Huber weight and
then estimates a SEM model using EQS.
Author: Ke-Hai Yuan and Zhiyong Zhang
Maintainer: Zhiyong Zhang
rsem-0.2/rsem/.Rbuildindex.3869 |only
rsem-0.3.1/rsem/DESCRIPTION | 12
rsem-0.3.1/rsem/MD5 | 22 -
rsem-0.3.1/rsem/NAMESPACE | 15
rsem-0.3.1/rsem/R/rsem.R | 788 +++++++++++++++++++++++++++++++++++-
rsem-0.3.1/rsem/man/rsem-package.Rd | 2
rsem-0.3.1/rsem/man/rsem.Ascov.Rd | 31 -
rsem-0.3.1/rsem/man/rsem.Rd | 2
rsem-0.3.1/rsem/man/rsem.emmusig.Rd | 22 -
rsem-0.3.1/rsem/man/rsem.index.Rd | 2
rsem-0.3.1/rsem/man/rsem.indexv.Rd | 2
rsem-0.3.1/rsem/man/rsem.indexvc.Rd | 4
rsem-0.3.1/rsem/man/rsem.pattern.Rd | 23 -
13 files changed, 847 insertions(+), 78 deletions(-)
Title: Less Code, More Results
Diff between lessR versions 2.4.1 dated 2012-07-20 and 2.4.2 dated 2012-07-22
Description: Each function accomplishes the work of several or more
standard R functions. For example, two function calls, Read()
and CountAll(), read the data and generate descriptive
statistics for all variables in the data frame, plus histograms
and bar charts as appropriate. Other functions provide for
descriptive statistics, a comprehensive regression analysis,
ANOVA and t-test, color plotting, color bar chart, color
histogram, color box plot, color density curves, a calibrated
power curve, and the reading and display of csv and other
formatted data. The function Help provides a help system that
suggests specific analyses and functions. Variable labels, and
color themes with the set function, are also available. A
confirmatory factor analysis of multiple indicator measurement
models is also available as well as pedagogical routines for
data simulation such as for the Central Limit Theorem.
Author: David W. Gerbing, School of Business Administration, Portland
State University
Maintainer: David W. Gerbing
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/zzz.R | 3 ++-
3 files changed, 7 insertions(+), 6 deletions(-)
Title: Downloads and processes GHCN daily
Diff between GhcnDaily versions 1.4 dated 2011-11-02 and 1.5 dated 2012-07-22
Description: The GhcnDaily package provides the core functions required
to download and format the GHCN Daily Data (TMax and Tmin) into
Monthly datasets. It is currently restricted to operating with
temperature data from the daily files.
Author: Steven Mosher,
Maintainer: Steven Mosher
GhcnDaily-1.4/GhcnDaily/demo |only
GhcnDaily-1.5/GhcnDaily/DESCRIPTION | 16 +++++++++-------
GhcnDaily-1.5/GhcnDaily/MD5 | 15 +++++----------
GhcnDaily-1.5/GhcnDaily/man/DAILY.FILES.DIRECTORY.Rd | 2 --
GhcnDaily-1.5/GhcnDaily/man/DAILY.QA.DIRECTORY.Rd | 5 -----
GhcnDaily-1.5/GhcnDaily/man/GhcnDaily-package.Rd | 4 ++--
GhcnDaily-1.5/GhcnDaily/man/mergeInventory.Rd | 5 -----
7 files changed, 16 insertions(+), 31 deletions(-)