Title: General solvers for initial value problems of ordinary
differential equations (ODE), partial differential equations
(PDE), differential algebraic equations (DAE), and delay
differential equations (DDE).
Diff between deSolve versions 1.10-3 dated 2011-08-10 and 1.10-4 dated 2012-07-27
Description: Functions that solve initial value problems of a system of
first-order ordinary differential equations (ODE), of partial
differential equations (PDE), of differential algebraic
equations (DAE), and of delay differential equations. The
functions provide an interface to the FORTRAN functions lsoda,
lsodar, lsode, lsodes of the ODEPACK collection, to the FORTRAN
functions dvode and daspk and a C-implementation of solvers of
the Runge-Kutta family with fixed or variable time steps. The
package contains routines designed for solving ODEs resulting
from 1-D, 2-D and 3-D partial differential equations (PDE) that
have been converted to ODEs by numerical differencing.
Author: Karline Soetaert
Maintainer: Thomas Petzoldt
deSolve-1.10-3/deSolve/inst/doc/jss.bst |only
deSolve-1.10-3/deSolve/inst/doc/jss.cls |only
deSolve-1.10-3/deSolve/inst/doc/source/ddaspkcomments.txt |only
deSolve-1.10-3/deSolve/inst/doc/source/opkdmain.f |only
deSolve-1.10-3/deSolve/inst/doc/source/opkdmaincomments.txt |only
deSolve-1.10-3/deSolve/inst/doc/source/vodecomments.txt |only
deSolve-1.10-4/deSolve/.Rinstignore |only
deSolve-1.10-4/deSolve/DESCRIPTION | 14
deSolve-1.10-4/deSolve/MD5 | 113 +-
deSolve-1.10-4/deSolve/NEWS | 17
deSolve-1.10-4/deSolve/R/Utilities.R | 38
deSolve-1.10-4/deSolve/R/daspk.R | 13
deSolve-1.10-4/deSolve/R/diagnostics.R | 2
deSolve-1.10-4/deSolve/R/euler.R | 2
deSolve-1.10-4/deSolve/R/lsodes.R | 78 +
deSolve-1.10-4/deSolve/R/ode.R | 4
deSolve-1.10-4/deSolve/R/vode.R | 2
deSolve-1.10-4/deSolve/R/zvode.R | 2
deSolve-1.10-4/deSolve/data/ccl4data.rda |binary
deSolve-1.10-4/deSolve/inst/doc/compiledCode.Rnw | 119 +-
deSolve-1.10-4/deSolve/inst/doc/compiledCode.pdf |binary
deSolve-1.10-4/deSolve/inst/doc/deSolve.Rnw | 13
deSolve-1.10-4/deSolve/inst/doc/deSolve.pdf |binary
deSolve-1.10-4/deSolve/inst/doc/examples/Schelde_DSA.R | 2
deSolve-1.10-4/deSolve/inst/doc/examples/Schelde_FKA.R | 2
deSolve-1.10-4/deSolve/inst/doc/examples/Schelde_FNA.R | 2
deSolve-1.10-4/deSolve/inst/doc/examples/Schelde_OSA.R | 2
deSolve-1.10-4/deSolve/inst/doc/examples/Schelde_pars.R | 2
deSolve-1.10-4/deSolve/inst/doc/source/ddaspkcomments.txt.gz |only
deSolve-1.10-4/deSolve/inst/doc/source/opkdmain.f.gz |only
deSolve-1.10-4/deSolve/inst/doc/source/opkdmaincomments.txt.gz |only
deSolve-1.10-4/deSolve/inst/doc/source/vodecomments.txt.gz |only
deSolve-1.10-4/deSolve/man/DLLfunc.Rd | 2
deSolve-1.10-4/deSolve/man/DLLres.Rd | 2
deSolve-1.10-4/deSolve/man/SCOC.Rd | 2
deSolve-1.10-4/deSolve/man/aquaphy.Rd | 2
deSolve-1.10-4/deSolve/man/daspk.Rd | 72 +
deSolve-1.10-4/deSolve/man/deSolve.Rd | 25
deSolve-1.10-4/deSolve/man/dede.Rd | 2
deSolve-1.10-4/deSolve/man/events.Rd | 2
deSolve-1.10-4/deSolve/man/lsodar.Rd | 2
deSolve-1.10-4/deSolve/man/lsode.Rd | 2
deSolve-1.10-4/deSolve/man/lsodes.Rd | 60 -
deSolve-1.10-4/deSolve/man/ode.1D.Rd | 2
deSolve-1.10-4/deSolve/man/ode.2D.Rd | 8
deSolve-1.10-4/deSolve/man/ode.3D.Rd | 2
deSolve-1.10-4/deSolve/man/ode.Rd | 2
deSolve-1.10-4/deSolve/man/ode.band.Rd | 2
deSolve-1.10-4/deSolve/man/radau.Rd | 5
deSolve-1.10-4/deSolve/man/timelags.Rd | 2
deSolve-1.10-4/deSolve/man/vode.Rd | 8
deSolve-1.10-4/deSolve/man/zvode.Rd | 13
deSolve-1.10-4/deSolve/src/call_lsoda.c | 9
deSolve-1.10-4/deSolve/src/call_rkAuto.c | 8
deSolve-1.10-4/deSolve/src/call_rkFixed.c | 2
deSolve-1.10-4/deSolve/src/ddaspk.f | 459 ++++------
deSolve-1.10-4/deSolve/src/deSolve.h | 4
deSolve-1.10-4/deSolve/src/dvode.f | 310 ++----
deSolve-1.10-4/deSolve/src/errmsg.f | 147 +--
deSolve-1.10-4/deSolve/src/opkdmain.f | 20
deSolve-1.10-4/deSolve/src/radau5.f | 84 -
deSolve-1.10-4/deSolve/src/rk_fixed.c | 14
deSolve-1.10-4/deSolve/src/rk_util.h | 4
deSolve-1.10-4/deSolve/src/twoDmap.c |only
64 files changed, 859 insertions(+), 846 deletions(-)
Title: Collection of functions for matrix differential calculus
Diff between matrixcalc versions 1.0-1 dated 2008-02-14 and 1.0-2 dated 2012-07-27
Description: A collection of functions to support matrix calculations
as presented in Magnus and Neudecker (1999). There are
additional functions that are comparable to APL functions which
are useful for actuarial models and calculations. This package
is used for teaching and research purposes at the Department of
Finance and Risk Engineering, New York University, Polytechnic
Institute, Brooklyn, NY 11201.
Author: Frederick Novomestky
Maintainer: Frederick Novomestky
matrixcalc-1.0-1/matrixcalc/R/is.numeric.matrix.R |only
matrixcalc-1.0-1/matrixcalc/duplication.R |only
matrixcalc-1.0-1/matrixcalc/man/is.numeric.matrix.Rd |only
matrixcalc-1.0-2/matrixcalc/DESCRIPTION | 34 +++++++-------
matrixcalc-1.0-2/matrixcalc/MD5 |only
matrixcalc-1.0-2/matrixcalc/NAMESPACE | 23 ++++++++-
matrixcalc-1.0-2/matrixcalc/R/D.matrix.R |only
matrixcalc-1.0-2/matrixcalc/R/E.matrices.R |only
matrixcalc-1.0-2/matrixcalc/R/H.matrices.R |only
matrixcalc-1.0-2/matrixcalc/R/K.matrix.R |only
matrixcalc-1.0-2/matrixcalc/R/L.matrix.R |only
matrixcalc-1.0-2/matrixcalc/R/N.matrix.R |only
matrixcalc-1.0-2/matrixcalc/R/T.matrices.R |only
matrixcalc-1.0-2/matrixcalc/R/commutation.matrix.R | 25 +---------
matrixcalc-1.0-2/matrixcalc/R/direct.prod.R |only
matrixcalc-1.0-2/matrixcalc/R/direct.sum.R |only
matrixcalc-1.0-2/matrixcalc/R/duplication.matrix.R | 18 -------
matrixcalc-1.0-2/matrixcalc/R/elimination.matrix.R | 25 ----------
matrixcalc-1.0-2/matrixcalc/R/entrywise.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/frobenius.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/frobenius.prod.R | 4 -
matrixcalc-1.0-2/matrixcalc/R/hadamard.prod.R | 38 +++++++++++++---
matrixcalc-1.0-2/matrixcalc/R/hilbert.matrix.R | 4 -
matrixcalc-1.0-2/matrixcalc/R/hilbert.schmidt.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/inf.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/is.symmetric.matrix.R | 6 ++
matrixcalc-1.0-2/matrixcalc/R/maximum.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/one.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/s.R |only
matrixcalc-1.0-2/matrixcalc/R/set.submatrix.R | 8 ++-
matrixcalc-1.0-2/matrixcalc/R/shift.down.R | 8 ++-
matrixcalc-1.0-2/matrixcalc/R/shift.left.R | 8 ++-
matrixcalc-1.0-2/matrixcalc/R/shift.right.R | 8 ++-
matrixcalc-1.0-2/matrixcalc/R/shift.up.R | 8 ++-
matrixcalc-1.0-2/matrixcalc/R/spectral.norm.R |only
matrixcalc-1.0-2/matrixcalc/R/svd.inverse.R |only
matrixcalc-1.0-2/matrixcalc/R/u.vectors.R |only
matrixcalc-1.0-2/matrixcalc/R/vec.R | 6 ++
matrixcalc-1.0-2/matrixcalc/man/D.matrix.Rd |only
matrixcalc-1.0-2/matrixcalc/man/E.matrices.Rd |only
matrixcalc-1.0-2/matrixcalc/man/H.matrices.Rd |only
matrixcalc-1.0-2/matrixcalc/man/K.matrix.Rd |only
matrixcalc-1.0-2/matrixcalc/man/L.matrix.Rd |only
matrixcalc-1.0-2/matrixcalc/man/N.matrix.Rd |only
matrixcalc-1.0-2/matrixcalc/man/T.matrices.Rd |only
matrixcalc-1.0-2/matrixcalc/man/commutation.matrix.Rd | 35 +++++++++-----
matrixcalc-1.0-2/matrixcalc/man/direct.prod.Rd |only
matrixcalc-1.0-2/matrixcalc/man/direct.sum.Rd |only
matrixcalc-1.0-2/matrixcalc/man/duplication.matrix.Rd | 28 ++++++++---
matrixcalc-1.0-2/matrixcalc/man/elimination.matrix.Rd | 23 ++++++---
matrixcalc-1.0-2/matrixcalc/man/entrywise.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/frobenius.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/frobenius.prod.Rd | 14 ++++-
matrixcalc-1.0-2/matrixcalc/man/hadamard.prod.Rd | 26 +++++++---
matrixcalc-1.0-2/matrixcalc/man/hilbert.matrix.Rd | 8 ++-
matrixcalc-1.0-2/matrixcalc/man/hilbert.schmidt.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/inf.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/inverse.Rd | 4 +
matrixcalc-1.0-2/matrixcalc/man/is.positive.definite.Rd | 8 +--
matrixcalc-1.0-2/matrixcalc/man/is.square.matrix.Rd | 6 ++
matrixcalc-1.0-2/matrixcalc/man/is.symmetric.matrix.Rd | 9 ++-
matrixcalc-1.0-2/matrixcalc/man/lower.triangle.Rd | 4 +
matrixcalc-1.0-2/matrixcalc/man/matrix.rank.Rd | 4 -
matrixcalc-1.0-2/matrixcalc/man/matrix.trace.Rd | 10 ++--
matrixcalc-1.0-2/matrixcalc/man/maximum.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/one.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/pascal.matrix.Rd | 16 +++++-
matrixcalc-1.0-2/matrixcalc/man/s.Rd |only
matrixcalc-1.0-2/matrixcalc/man/set.submatrix.Rd | 5 --
matrixcalc-1.0-2/matrixcalc/man/shift.down.Rd | 3 -
matrixcalc-1.0-2/matrixcalc/man/shift.left.Rd | 3 -
matrixcalc-1.0-2/matrixcalc/man/shift.right.Rd | 3 -
matrixcalc-1.0-2/matrixcalc/man/shift.up.Rd | 3 -
matrixcalc-1.0-2/matrixcalc/man/spectral.norm.Rd |only
matrixcalc-1.0-2/matrixcalc/man/svd.inverse.Rd |only
matrixcalc-1.0-2/matrixcalc/man/u.vectors.Rd |only
matrixcalc-1.0-2/matrixcalc/man/upper.triangle.Rd | 6 ++
matrixcalc-1.0-2/matrixcalc/man/vandermonde.matrix.Rd | 17 ++++++-
matrixcalc-1.0-2/matrixcalc/man/vec.Rd | 7 --
matrixcalc-1.0-2/matrixcalc/man/vech.Rd | 4 -
80 files changed, 278 insertions(+), 191 deletions(-)
Title: Visualizing of distributions of covariance matrices
Diff between VisCov versions 1.1 dated 2011-08-01 and 1.3 dated 2012-07-27
Description: Visualizing of distributions of covariance matrices
Author: Tomoki Tokuda
Maintainer: Tomoki Tokuda
DESCRIPTION | 11 +++++------
MD5 |only
R/VisCov.R | 16 +++++++++-------
3 files changed, 14 insertions(+), 13 deletions(-)
Title: Functions for optimal matching
Diff between optmatch versions 0.7-3 dated 2012-04-02 and 0.7-5 dated 2012-07-27
Description: Functions for optimal matching, including full matching
Author: Ben B. Hansen
Maintainer: Mark M. Fredrickson
optmatch-0.7-3/optmatch/.gitignore |only
optmatch-0.7-3/optmatch/optmatch_0.7-2.tar.gz |only
optmatch-0.7-3/optmatch/optmatch_0.7-3.tar.gz |only
optmatch-0.7-5/optmatch/ChangeLog | 4
optmatch-0.7-5/optmatch/DESCRIPTION | 12
optmatch-0.7-5/optmatch/MD5 | 30 +-
optmatch-0.7-5/optmatch/NAMESPACE | 2
optmatch-0.7-5/optmatch/R/Ops.optmatch.dlist.R | 26 +
optmatch-0.7-5/optmatch/R/caliper.R | 4
optmatch-0.7-5/optmatch/R/mahal.dist.R | 26 +
optmatch-0.7-5/optmatch/R/mdist.R | 24 +
optmatch-0.7-5/optmatch/data/plantdist.rda |binary
optmatch-0.7-5/optmatch/man/caliper.Rd | 35 ++
optmatch-0.7-5/optmatch/tests/caliper.R | 14 -
optmatch-0.7-5/optmatch/tests/mahal-dist.R | 26 +
optmatch-0.7-5/optmatch/tests/mahal-dist.Rout.save | 135 +++++++++-
optmatch-0.7-5/optmatch/tests/mdist.R | 64 +++-
optmatch-0.7-5/optmatch/tests/summary.optmatch-tests.Rout.save | 2
18 files changed, 339 insertions(+), 65 deletions(-)
Title: Sensitivity Analysis for Complex Computer Models
Diff between CompModSA versions 1.3.1 dated 2011-10-24 and 1.3.1-1 dated 2012-07-27
Description: Uses regression surface approximations to calculate
variance decomposition and total variance sensitivity indices.
This package is useful for conducting sensitivity analysis of
complex computer codes when model evaluations are somewhat
expensive (e.g. take longer than a couple seconds to run) but a
reasonable number (50 or more) of model evaluations can be
obtained at sampled input values.
Author: Curtis Storlie
Maintainer: Alexandre Janon
CompModSA-1.3.1-1/CompModSA/DESCRIPTION | 10 +++++-----
CompModSA-1.3.1-1/CompModSA/MD5 | 9 ++++-----
CompModSA-1.3.1-1/CompModSA/R/step_func.R | 2 +-
CompModSA-1.3.1-1/CompModSA/man/predict.sensitivity.Rd | 2 +-
CompModSA-1.3.1-1/CompModSA/man/print.sensitivity.Rd | 2 +-
CompModSA-1.3.1/CompModSA/CompModSA_1.3.tar.gz |only
6 files changed, 12 insertions(+), 13 deletions(-)
Title: Assessment of risk prediction models
Diff between PredictABEL versions 1.2 dated 2011-10-19 and 1.2-1 dated 2012-07-27
Description: PredictABEL includes functions to assess the performance
of risk models. The package contains functions for the various
measures that are used in empirical studies, including
univariate and multivariate odds ratios (OR) of the predictors,
the c-statistic (or area under the receiver operating
characteristic (ROC) curve (AUC)), Hosmer-Lemeshow goodness of
fit test, reclassification table, net reclassification
improvement (NRI) and integrated discrimination improvement
(IDI). Also included are functions to create plots, such as
risk distributions, ROC curves, calibration plot,
discrimination box plot and predictiveness curves. In addition
to functions to assess the performance of risk models, the
package includes functions to obtain weighted and unweighted
risk scores as well as predicted risks using logistic
regression analysis. These logistic regression functions are
specifically written for models that include genetic variables,
but they can also be applied to models that are based on
non-genetic risk factors only. Finally, the package includes
function to construct a simulated dataset with genotypes,
genetic risks, and disease status for a hypothetical
population, which is used for the evaluation of genetic risk
models.
Author: Suman Kundu, Yurii S. Aulchenko, A. Cecile J.W. Janssens
Maintainer: Suman Kundu
PredictABEL-1.2-1/PredictABEL/DESCRIPTION | 19 +--
PredictABEL-1.2-1/PredictABEL/MD5 | 13 +-
PredictABEL-1.2-1/PredictABEL/NAMESPACE |only
PredictABEL-1.2-1/PredictABEL/NEWS |only
PredictABEL-1.2-1/PredictABEL/R/PredictABEL.R | 92 ++++++++++--------
PredictABEL-1.2-1/PredictABEL/man/predRisk.Rd | 4
PredictABEL-1.2-1/PredictABEL/man/reclassification.Rd | 22 ++--
PredictABEL-1.2-1/PredictABEL/man/simulatedDataset.Rd | 23 ++--
PredictABEL-1.2/PredictABEL/R/simulatedDataset.R |only
9 files changed, 103 insertions(+), 70 deletions(-)
Title: Prediction of condition-specific transcription factor
interactions
Diff between OneHandClapping versions 1.0 dated 2012-01-24 and 1.5 dated 2012-07-27
More information about OneHandClapping at CRAN
Description: Predictions of condition-specific TF interactions using
gene activity data, such as mRNA expression measurements and a
TF-target graph.
Author: Sebastian Dümcke [aut, cre], Achim Tresch [ths]
Maintainer: Sebastian Dümcke
OneHandClapping-1.0/OneHandClapping/.project |only
OneHandClapping-1.0/OneHandClapping/OneHandClapping-Ex.R |only
OneHandClapping-1.5/OneHandClapping/DESCRIPTION | 17 +++++++-----
OneHandClapping-1.5/OneHandClapping/MD5 | 16 +++++------
OneHandClapping-1.5/OneHandClapping/R/Screening.R | 4 +-
OneHandClapping-1.5/OneHandClapping/R/siscreen.R | 11 +++++++
OneHandClapping-1.5/OneHandClapping/R/siscreen.lr.R | 1
OneHandClapping-1.5/OneHandClapping/data/biogridList.71.rda |binary
OneHandClapping-1.5/OneHandClapping/data/salt.folds.rda |binary
OneHandClapping-1.5/OneHandClapping/data/yeastract.rda |binary
OneHandClapping-1.5/OneHandClapping/inst |only
11 files changed, 32 insertions(+), 17 deletions(-)
Permanent link
Title: Statistical Matching
Diff between StatMatch versions 1.0.5 dated 2012-04-04 and 1.1.0 dated 2012-07-27
Description: The package StatMatch provides some R functions to perform
statistical matching, i.e. the integration of two data sources
referred to the same target population which share a number of
common variables. Some functions can also be used to impute
missing values in data sets through hot deck imputation
methods. Methods to perform statistical matching when dealing
with data from complex sample surveys are available too.
Author: Marcello D'Orazio
Maintainer: Marcello D'Orazio
StatMatch-1.0.5/StatMatch/R/RANDwNND.hotdeck.r |only
StatMatch-1.0.5/StatMatch/R/comb.samples.r |only
StatMatch-1.1.0/StatMatch/DESCRIPTION | 8
StatMatch-1.1.0/StatMatch/MD5 | 22 +-
StatMatch-1.1.0/StatMatch/NEWS | 3
StatMatch-1.1.0/StatMatch/R/Fbwidths.by.x.R | 16 +
StatMatch-1.1.0/StatMatch/R/Frechet.bounds.cat.R | 10 -
StatMatch-1.1.0/StatMatch/R/RANDwNND.hotdeck.R |only
StatMatch-1.1.0/StatMatch/R/comb.samples.R |only
StatMatch-1.1.0/StatMatch/inst/doc/Statistical_Matching_with_StatMatch.Rnw | 100 ++++------
StatMatch-1.1.0/StatMatch/inst/doc/Statistical_Matching_with_StatMatch.pdf |binary
StatMatch-1.1.0/StatMatch/man/Fbwidths.by.x.Rd | 18 +
StatMatch-1.1.0/StatMatch/man/Frechet.bounds.cat.Rd | 46 +++-
StatMatch-1.1.0/StatMatch/man/comb.samples.Rd | 37 +++
14 files changed, 162 insertions(+), 98 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-10 1.3.5
2010-07-24 1.3.0
2010-05-08 1.2.4
2010-05-01 1.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-22 1.0-1
2011-09-14 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-28 0.9.3
2012-03-16 0.9.2
2011-10-10 0.9.0
2011-02-04 0.5.0
2010-02-02 0.2.1
2010-01-27 0.2.0
2010-01-15 0.1.1
2009-06-28 0.1
Title: Citations for knitr markdown files
Diff between knitcitations versions 0.0-2 dated 2012-06-19 and 0.1-0 dated 2012-07-27
Description: While traditional Sweave documents can take advantage of
LaTeX citation tools, knitr also allows users to combine the
much simpler markdown with R code. This package offers
citation tools to make up for this. This package will also
take advantage of the web-based nature of markdown documents to
allow dynamic citations pulled from the web.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger
knitcitations-0.0-2/knitcitations/example.bib |only
knitcitations-0.0-2/knitcitations/inst/examples/example.bib |only
knitcitations-0.0-2/knitcitations/inst/examples/refs.bib |only
knitcitations-0.0-2/knitcitations/vignettes/citations.pdf |only
knitcitations-0.1-0/knitcitations/DESCRIPTION | 9 +++---
knitcitations-0.1-0/knitcitations/MD5 | 18 ++++--------
knitcitations-0.1-0/knitcitations/NAMESPACE | 2 -
knitcitations-0.1-0/knitcitations/NEWS | 8 +++++
knitcitations-0.1-0/knitcitations/R/bibliography.R | 9 +++---
knitcitations-0.1-0/knitcitations/R/bibtex_io.R | 6 ++--
knitcitations-0.1-0/knitcitations/man/bibliography.Rd | 11 ++++---
knitcitations-0.1-0/knitcitations/man/write.bibtex.Rd | 8 ++---
12 files changed, 40 insertions(+), 31 deletions(-)