Sun, 29 Jul 2012

Package psyphy updated to version 0.1-7 with previous version 0.1-6 dated 2011-10-14

Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in analyzing data from pyschophysical experiments. It includes functions for calculating d' from several different experimental designs, links for m-alternative forced-choice (mafc) data to be used with the binomial family in glm (and possibly other contexts) and self-Start functions for estimating gamma values for CRT screen calibrations.
Author: Kenneth Knoblauch
Maintainer: Ken Knoblauch

Diff between psyphy versions 0.1-6 dated 2011-10-14 and 0.1-7 dated 2012-07-29

 DESCRIPTION  |    8 ++++----
 MD5          |    8 ++++----
 R/gl.links.R |    8 ++++----
 R/mafc.R     |    8 ++++----
 inst/NEWS    |    6 +++++-
 5 files changed, 21 insertions(+), 17 deletions(-)

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New package poisson.glm.mix with initial version 1.0
Package: poisson.glm.mix
Type: Package
Title: Fit high dimensional mixtures of Poisson GLM's
Version: 1.0
Date: 2012-07-04
Author: Panagiotis Papastamoulis, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau
Maintainer: Panagiotis Papastamoulis
Description: High dimensional mixtures of Poisson Generalized Linear models with three different parameterizations of Poisson means are considered. Moreover, partitioning the response variables into a set of blocks is possible. The package estimates parameters via EM algorithm. For an efficient initialization, a random splitting small-EM is introduced.
License: GPL-2
Packaged: 2012-07-29 13:01:42 UTC; Panagiotis
Repository: CRAN
Date/Publication: 2012-07-29 15:21:58

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Package betareg updated to version 3.0-2 with previous version 3.0-1 dated 2012-07-22

Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions. In addition to maximum likelihood regression (for both mean and precision of a beta-distributed response), bias-corrected and bias-reduced estimation as well as finite mixture models and recursive partitioning for beta regressions are provided.
Author: Achim Zeileis [aut, cre], Francisco Cribari-Neto [aut], Bettina Gruen [aut], Ioannis Kosmidis [aut], Alexandre B. Simas [ctb] (earlier version by), Andrea V. Rocha [ctb] (earlier version by)
Maintainer: Achim Zeileis

Diff between betareg versions 3.0-1 dated 2012-07-22 and 3.0-2 dated 2012-07-29

 DESCRIPTION              |    8 ++++----
 MD5                      |   12 ++++++------
 NEWS                     |    9 ++++++++-
 R/betareg.R              |    2 +-
 R/make.dmu.deta.R        |    9 ++++++---
 inst/doc/betareg-ext.pdf |binary
 inst/doc/betareg.pdf     |binary
 7 files changed, 25 insertions(+), 15 deletions(-)

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Package GLDEX (with last version 1.0.4.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-04-26 1.0.4.4
2012-03-08 1.0.4.3
2012-02-29 1.0.4.2

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Package CDM updated to version 1.1-0 with previous version 1.0-0 dated 2011-10-27

Title: Cognitive Diagnosis Modeling
Description: Functions and example empirical (i.e., fraction subtraction) and artificial data for cognitive diagnosis modeling. This package implements parameter estimation procedures for the deterministic-input, noisy-and-gate (DINA) and deterministic-input, noisy-or-gate (DINO) models. See package?CDM for an overview.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch

Diff between CDM versions 1.0-0 dated 2011-10-27 and 1.1-0 dated 2012-07-29

 DESCRIPTION                           |   37 +-
 MD5                                   |   47 +-
 NAMESPACE                             |    3 
 NEWS                                  |only
 R/check.input.R                       |   16 
 R/din.R                               |  572 ++++++++++++++++++----------------
 R/plot.din.R                          |   79 ++--
 R/print.din.R                         |   24 -
 R/print.summary.din.R                 |   69 +++-
 R/summary.din.R                       |   74 +++-
 data/fraction.subtraction.data.rda    |binary
 data/fraction.subtraction.qmatrix.rda |binary
 data/sim.dina.rda                     |binary
 data/sim.dino.rda                     |binary
 data/sim.qmatrix.rda                  |binary
 man/CDM-internal.Rd                   |    3 
 man/CDM-package.Rd                    |   18 -
 man/Data-sim.Rd                       |    4 
 man/din.Rd                            |  138 +++++---
 man/fraction.subtraction.data.Rd      |   36 +-
 man/plot.din.Rd                       |   44 +-
 man/print.din.Rd                      |   17 -
 man/print.summary.din.Rd              |   10 
 man/sim.din.Rd                        |   15 
 man/summary.din.Rd                    |   57 ++-
 25 files changed, 759 insertions(+), 504 deletions(-)

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Package plotrix updated to version 3.4-3 with previous version 3.4-2 dated 2012-06-22

Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi, Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers, Henrik Singmann,Ted Toal
Maintainer: Jim Lemon

Diff between plotrix versions 3.4-2 dated 2012-06-22 and 3.4-3 dated 2012-07-29

 DESCRIPTION          |    8 ++--
 MD5                  |   36 +++++++++----------
 NEWS                 |    4 +-
 R/addtable2plot.R    |   79 ++++++++++++++++++++++++-------------------
 R/arctext.R          |   30 +++++++++++-----
 R/box.heresy.R       |    4 +-
 R/pyramid.plot.R     |    3 +
 R/taylor.diagram.R   |    4 +-
 R/textbox.R          |   92 +++++++++++++++++++++++++++++++++++++--------------
 R/weighted.hist.R    |    4 +-
 data/soils.rda       |binary
 man/addtable2plot.Rd |   13 ++++---
 man/arctext.Rd       |   18 +++++++--
 man/barp.Rd          |    7 ++-
 man/box.heresy.Rd    |    3 +
 man/boxed.labels.Rd  |    6 ++-
 man/pyramid.plot.Rd  |   52 ++++++++++++++--------------
 man/textbox.Rd       |   58 +++++++++++++++++++++++++-------
 man/weighted.hist.Rd |    6 ++-
 19 files changed, 277 insertions(+), 150 deletions(-)

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New package metRology with initial version 0.9-14
Package: metRology
Version: 0.9-14
Date: 2012-07-26
Title: Support for metrological applications
Author: Stephen L R Ellison .
Maintainer: Stephen L R Ellison
Depends: R (>= 2.14.0), base, stats, graphics, MASS, numDeriv
Suggests:
Description: metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and inter-laboratory metrology comparison studies.
License: GPL (>= 2)
URL: http://metrology.sourceforge.net
Repository: CRAN
Repository/R-Forge/Project: metrology
Repository/R-Forge/Revision: 29
Packaged: 2012-07-26 02:19:49 UTC; rforge
Date/Publication: 2012-07-29 10:38:26

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New package WCQ with initial version 0.1-2
Package: WCQ
Type: Package
Title: WCQ: QTL Mapping with Small Sample Size
Version: 0.1-2
Date: 2012-07-29
Author: Jan Michael Yap
Maintainer: Jan Michael Yap
Description: The package contains the WCQ method for QTL mapping specially with small sample size. It also contains implementation of the Chen-Qin two-sample and one-sample test of means.
License: GPL-3
Packaged: 2012-07-29 07:12:09 UTC; janmichaelyap
Repository: CRAN
Date/Publication: 2012-07-29 08:24:28

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Package ftsa updated to version 3.4 with previous version 3.3 dated 2012-05-28

Title: Functional time series analysis
Description: Functions for functional time series
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang

Diff between ftsa versions 3.3 dated 2012-05-28 and 3.4 dated 2012-07-29

 CHANGELOG                   |    8 +
 DESCRIPTION                 |    8 -
 MD5                         |   39 +++++----
 R/DataPostProc.r            |only
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 R/ParseDevString.r          |only
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 R/fdpca.R                   |   74 +++++++++--------
 R/ftsm.R                    |   27 +++---
 R/loadSgnU.r                |only
 R/plsPI.r                   |   30 +++----
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 man/dynupdate.Rd            |   10 --
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 man/ftsmweightselect.Rd     |    5 -
 man/pcscorebootstrapdata.Rd |    3 
 man/plot.fm.Rd              |    2 
 man/plot.ftsm.Rd            |    2 
 man/residuals.fm.Rd         |    1 
 man/sd.fts.Rd               |    4 
 man/summary.fm.Rd           |    1 
 man/var.fts.Rd              |    4 
 22 files changed, 296 insertions(+), 290 deletions(-)

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Package frmqa updated to version 0.1-3 with previous version 0.1-1 dated 2012-04-26

Title: The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
Description: A collection of R and C++ functions to work with the generalized hyperbolic distribution, related distributions and their applications in financial risk management and quantitative analysis.
Author: Thanh T. Tran
Maintainer: Thanh T. Tran

Diff between frmqa versions 0.1-1 dated 2012-04-26 and 0.1-3 dated 2012-07-29

 DESCRIPTION          |   18 ++++++++++--------
 MD5                  |    5 +++--
 besselK_inc_ite.Rd   |only
 man/frmqa-package.Rd |   13 ++++---------
 4 files changed, 17 insertions(+), 19 deletions(-)

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New package bigmatrix with initial version 0.9.1
Package: bigmatrix
Type: Package
Title: Tuning Insensitive Graph Estimation and Regression
Version: 0.9.1
Date: 2012-07-28
Author: Xingguo, Tuo Zhao, Lie Wang and Han Liu
Maintainer: Xingguo LI
Depends: R (>= 2.14), glmnet, lattice, igraph, MASS, Matrix
Description: The package "bigmatrix" solves for the precision matrix estimations with two different methods. The first is the tuning insensitive graph estimation and regression implemented with scaled Lasso. Another method is by estimating at a grid of values for the constrained lambda and the augmented Lagrangian multiplier rho based on constrained L1 minimization for sparse precision matrix estimation, which guarantees positive definite output by projected augmented Lagrangian method and further accelerates the algorithm via coordinate descent and active set methods.
License: GPL-2
Repository: CRAN
Packaged: 2012-07-28 21:14:28 UTC; admin-118
Date/Publication: 2012-07-29 06:21:29

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