Title: Visualization for seismic tomography
Diff between RTOMO versions 1.0-8 dated 2011-10-20 and 1.0-9 dated 2012-07-30
Description: Created mainly for use with seismic tomography, this
program plots tomographic images, and allows one to interact
and query three-dimensional tomographic models. Vertical
cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/SHOWTOMO.R | 7 ++++---
R/tomo.colors.R | 12 ++++++------
man/RTOMO-package.Rd | 4 ++--
man/SHOWTOMO.Rd | 11 +++++++++--
6 files changed, 30 insertions(+), 22 deletions(-)
Title: Seismic Time Series Analysis Tools
Diff between RSEIS versions 3.0-6 dated 2012-05-19 and 3.0-9 dated 2012-07-30
Description: Multiple interactive codes to view and analyze seismic
data, via spectrum analysis, wavelet transforms, particle
motion, hodograms. Includes general time-series tools,
plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 8 -
MD5 | 22 ++--
NEWS | 4
R/Ray.time1D.R | 12 +-
R/many.time1D.R | 2
R/pickFUNCS.R | 242 ++++++++++++++++++++++++++++++---------------------
R/travel.time1D.R | 8 +
inst/doc/hodo.pdf |binary
inst/doc/rseis.pdf |binary
man/RSEIS-package.Rd | 2
man/YPIX.Rd | 2
src/TTray.c | 5 +
12 files changed, 185 insertions(+), 122 deletions(-)
Title: Seismic Hypocenter Determination
Diff between Rquake versions 1.6-3 dated 2012-05-19 and 2.0-1 dated 2012-07-30
Description: Rquake is a package for analysis of seismic data collected
continuously, or in trigger mode. The functions organize other
functions from RSEIS and GEOmap to help researchers pick,
locate, and store hypocenters for detailed seismic
investigation.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees
DESCRIPTION | 21 +++++++------
MD5 | 47 +++++++++++++++++++++++++-----
R/BLACKJACK.R |only
R/HiJACK.R |only
R/LDATlist.R |only
R/MeanStaDist.R |only
R/PostREQquake.R |only
R/PostVquake.R |only
R/RElocateEQ.R |only
R/ROTcovQUAKE.R |only
R/Vlocate.R | 18 ++++++++---
R/XYlocate.R | 29 +++++++++++++-----
R/contPFarrivals.R | 73 +++++++++++++++++++++++++++++++++++++++--------
R/getEulers.R |only
R/imageINFLUENCE.R |only
R/plotEQ.R |only
R/plotJACKLLZ.R |only
R/rglGEOmapXY.R |only
R/ripper.R |only
data/coso_sta_LLZ.rda |only
data/coso_sta_LLZ.txt.gz |only
man/BLACKJACK.Rd |only
man/HiJACK.Rd |only
man/LDATlist.Rd |only
man/MeanStaDist.Rd |only
man/PostREQquake.Rd |only
man/PostVquake.Rd |only
man/RElocateEQ.Rd |only
man/ROTcovQUAKE.Rd |only
man/Rquake-package.Rd | 4 +-
man/Vlocate.Rd | 2 +
man/XYlocate.Rd | 44 +++++++++++++++++++++++-----
man/contPFarrivals.Rd | 28 ++++++++++++++----
man/coso_sta_LLZ.Rd |only
man/getEulers.Rd |only
man/imageINFLUENCE.Rd |only
man/plotEQ.Rd |only
man/plotJACKLLZ.Rd |only
man/rglGEOmapXY.Rd |only
man/ripper.Rd |only
40 files changed, 208 insertions(+), 58 deletions(-)
Title: Basic Theoretical Copula, Empirical Copula, and Various Utility
Functions
Diff between copBasic versions 1.5.1 dated 2011-12-06 and 1.5.2 dated 2012-07-30
Description: This package implements extensive, but select, functions
for copula computations and is used by several other packages
by the author. This particular package provides the lower (W),
upper (M), and product (P) copulas as well as the
product-summation-product copula (PSP). Wrapper functions for
the copula (COP), survival copula (surCOP), dual of a copula
(duCOP), and co-copula (coCOP) are provided. The package has
(level.curvesCOP) for drawing level curves of a given copula,
and this function uses the inverse of a copula (COPinv and a
COPinv2 is provided for completeness). The numerical derivative
for the derivative of a copula is provided by (derCOP and
derCOP2) and the inversion of these functions are by (derCOPinv
and derCOPinv2). The diagonal sections of a copula are
supported by (diagCOP), and sections and derivatives of
sections are supported by (sectionCOP). The inverses of copula
derivatives are important for random variate generation. Random
variate generation for a copula using the conditional
distribution method and the derivative of a copula is provided
by (simCOP and the reduced capability simCOPmicro). For
slightly broader application for purposes of education and
experimentation with copulas, this package also supports the
Plackett copula (PLACKETTcop) because of the general
applicability of this copula. The Plackett copula is
comprehensive, which means that it can attain complete negative
association, independence, and positive association. Plackett
parameter estimation is straightforward with (PLACKETTpar). A
Plackett-specific, random-variate algorithm is by
(PLACKETTsim). Composition of a single copula for two external
parameters is by (composite1COP). Composition of two copulas
through use of two external parameters is provided by
(composite2COP), and the composition of two copulas through the
use of four external parameters is provided by (composite3COP).
Composite copula random variates are generated by
(simcompositeCOP). These compositions generally yield
asymmetric copulas. A data set is provided that contains darts
thrown at the L-comoment space of a Plackett-Plackett
composited compula; these data might be used for experimental
copula estimation by the method of L-comoments. The package
also provides a full suite of functions to numerically compute
measures of association through concordance for a given copula
such as Kendall's Tau (tauCOP), Spearman's Rho (rhoCOP), Gini's
Gamma (giniCOP), and Blomqvist's Beta (blomCOP). The Schweizer
and Wolff's Sigma (wolfCOP) is implemented as a measure of
dependency as opposed the the concordance measures just listed.
Upper and lower tail dependence is computed by numerical limit
convergence by (taildepCOP). A numerical computation of the
logical whether a copula is left-tail decreasing or right-tail
increasing is provided by (isCOP.LTD and isCOP.RTI). The
package supports quantile and median regression through
(qua.regressCOP, qua.regress2COP, med.regressCOP,
med.regress2COP) for a given copula where "2" represents V with
respect to U instead of U with respect to V. The regressions
can be plotted by (qua.regressCOP.draw). **Empirical Copulas**
Empirical copulas are supported by (EMPIRcop) and the
computation of a data frame of the copula for each sample value
is provided by (EMPIRcopdf). The empirical copula functions are
heavily dependent on a simple grid or matrix structure, which
is created by (EMPIRgrid). The derivatives of the grid, which
are the conditional cumulative distribution functions of the
copula sections, are computed by (EMPIRgridder and
EMPIRgridder2). The inverses of the derivatives, which are the
conditional quantile functions of the copula sections, are
computed by (EMPIRgridderinv and EMPIRgridderinv2). Support for
median and quantile regression of the empirical copula are
provided by (EMPIRmed.regress, EMPIRmed.regress2,
EMPIRqua.regress, EMPIRqua.regress2), which use the grids
emanating from (EMPIRgridderinv and EMPIRgridderinv2). Support
for simulation of V using U from an empirical copula is
provided by (EMPIRsim or by EMPIRsimv).
Author: William H. Asquith
Maintainer: William H. Asquith
ChangeLog | 12 ++++++-
DESCRIPTION | 78 +++++++++++++++++++++++++++++++++++++++++++++----
MD5 | 16 +++++-----
R/med.regressCOP.R | 3 -
R/med.regressCOP2.R | 3 -
R/qua.regressCOP.R | 1
R/qua.regressCOP2.R | 1
man/med.regressCOP.Rd | 3 -
man/med.regressCOP2.Rd | 3 -
9 files changed, 97 insertions(+), 23 deletions(-)
Title: R interface to Python via Jython
Diff between rJython versions 0.0-2 dated 2012-07-30 and 0.0-4 dated 2012-07-30
Description: R interface to Python via Jython allowing R to call python
code.
Author: G. Grothendieck and Carlos J. Gil Bellosta (authors of Jython
itself are Jim Hugunin, Barry Warsaw, Samuele Pedroni, Brian
Zimmer, Frank Wierzbicki and others; Bob Ippolito is the author
of the simplejson Python module)
Maintainer: Carlos J. Gil Bellosta
DESCRIPTION | 16 +++++-----------
MD5 | 5 +++--
NAMESPACE |only
R/rJython.R | 22 +++++++++++++---------
4 files changed, 21 insertions(+), 22 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-10 dated 2012-06-16 and 0.9-11 dated 2012-07-30
Description: This package contains diverse more or less complicated
functions, written to simplify beginners' (but not only) life:
simplifications of existing functions, basic but not
implemented tests, easy-to-use tools... All functions are
presented in the French book 'Aide-memoire de statistique
appliquee a la biologie', written by the same author and
available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 8 +-
MD5 | 51 ++++++++++-----
R/G.multcomp.R |only
R/G.test.R |only
R/G.theo.multcomp.R |only
R/byf.hist.R |only
R/byf.qqnorm.R |only
R/byf.shapiro.R |only
R/pairwise.G.test.R |only
R/perm.anova.1way.R | 3
R/perm.anova.2wayA.R | 3
R/perm.anova.2wayB.R | 3
R/perm.anova.2wayC.R | 3
R/perm.anova.2wayD.R | 5 +
R/perm.anova.3wayA.R | 5 +
R/perm.anova.3wayB.R | 5 +
R/perm.bartlett.test.R | 3
R/perm.cor.test.R | 3
R/perm.t.test.R | 4 +
R/perm.var.test.R | 3
R/print.G.multcomp.R |only
R/print.G.test.R |only
R/print.G.theo.multcomp.R |only
R/print.byf.shapiro.R |only
R/print.pairwise.G.test.R |only
R/zzz.R | 4 -
RVAideMemoire-Ex.R | 138 +++++++++++++++++++++++++++++++++++++++----
man/G.multcomp.Rd |only
man/G.test.Rd |only
man/G.theo.multcomp.Rd |only
man/RVAideMemoire-package.Rd | 4 -
man/byf.hist.Rd |only
man/byf.qqnorm.Rd |only
man/byf.shapiro.Rd |only
man/pairwise.G.test.Rd |only
man/print.bootstrap.Rd | 5 +
36 files changed, 211 insertions(+), 39 deletions(-)
Title: GEV conditional density estimation network
Diff between GEVcdn versions 1.1 dated 2011-05-05 and 1.1.1 dated 2012-07-30
Description: A flexible nonlinear modelling framework for nonstationary
generalized extreme value analysis in hydroclimatology
Author: Alex J. Cannon
Maintainer: Alex J. Cannon
DESCRIPTION | 8 ++++----
MD5 |only
NAMESPACE |only
inst/CITATION | 5 +++--
man/GEVcdn-package.Rd | 2 +-
5 files changed, 8 insertions(+), 7 deletions(-)
Title: Multivariate Dependence with Copulas
Diff between copula versions 0.99-4 dated 2012-07-03 and 0.999-0 dated 2012-07-30
Description: Classes (S4) of commonly used copulas including elliptical
(normal and t), Archimedean (Clayton, Gumbel, Frank, and
Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss,
Galambos, Tawn, and t-EV), and other families (Plackett and
Farlie-Gumbel-Morgenstern). Methods for density, distribution,
random number generation, bivariate dependence measures,
perspective and contour plots. Functions for fitting copula
models with variance estimate. Independence tests among random
variables and random vectors. Serial independence tests for
univariate and multivariate continuous time series.
Goodness-of-fit tests for copulas based on multipliers, the
parametric bootstrap with several transformation options.
Bivariate and multivariate tests of extreme-value dependence.
Bivariate tests of exchangeability. Now with former 'nacopula'
for working with nested Archimedean copulas. Specifically,
providing procedures for computing function values and cube
volumes, characteristics such as Kendall's tau and tail
dependence coefficients, efficient sampling algorithms, various
estimators, and goodness-of-fit tests. The package also
contains related univariate distributions and special functions
such as the Sibuya distribution, the polylogarithm, Stirling
and Eulerian numbers.
Author: Marius Hofert
Maintainer: Martin Maechler
copula-0.99-4/copula/R/debye.R |only
copula-0.99-4/copula/man/Anfun.Rd |only
copula-0.99-4/copula/man/psiDabsMC.Rd |only
copula-0.99-4/copula/src/Anfun.c |only
copula-0.99-4/copula/src/Anfun.h |only
copula-0.99-4/copula/src/R_debye.c |only
copula-0.99-4/copula/src/empcop.stat.c |only
copula-0.99-4/copula/src/empcop.stat.h |only
copula-0.99-4/copula/src/empcopm.test.c |only
copula-0.99-4/copula/src/empcops.test.c |only
copula-0.99-4/copula/src/empcopsm.test.c |only
copula-0.99-4/copula/src/empcopu.test.c |only
copula-0.99-4/copula/src/gsl |only
copula-0.99-4/copula/src/gsl_debye.c |only
copula-0.99-4/copula/src/set.utils.c |only
copula-0.99-4/copula/src/set.utils.h |only
copula-0.999-0/copula/DESCRIPTION | 45
copula-0.999-0/copula/MD5 | 385 ++++----
copula-0.999-0/copula/NAMESPACE | 58 -
copula-0.999-0/copula/R/AllClass.R | 42
copula-0.999-0/copula/R/An.R |only
copula-0.999-0/copula/R/Classes.R | 155 ++-
copula-0.999-0/copula/R/Copula.R | 37
copula-0.999-0/copula/R/K.R | 34
copula-0.999-0/copula/R/amhCopula.R | 102 +-
copula-0.999-0/copula/R/archmCopula.R | 33
copula-0.999-0/copula/R/asymCopula.R | 71 -
copula-0.999-0/copula/R/asymExplicitCopula.R | 62 -
copula-0.999-0/copula/R/aux-acopula.R | 107 +-
copula-0.999-0/copula/R/claytonCopula.R | 135 +-
copula-0.999-0/copula/R/cop_objects.R | 166 ++-
copula-0.999-0/copula/R/derCdfPdf.R | 59 -
copula-0.999-0/copula/R/ellipCopula.R | 26
copula-0.999-0/copula/R/empcop.R |only
copula-0.999-0/copula/R/estimation.R | 17
copula-0.999-0/copula/R/evCopula.R | 78 -
copula-0.999-0/copula/R/evTests.R | 163 +--
copula-0.999-0/copula/R/exchTests.R | 57 -
copula-0.999-0/copula/R/fgmCopula.R | 42
copula-0.999-0/copula/R/fitCopula.R | 71 -
copula-0.999-0/copula/R/fitMvdc.R | 96 +-
copula-0.999-0/copula/R/frankCopula.R | 149 +--
copula-0.999-0/copula/R/galambosCopula.R | 57 -
copula-0.999-0/copula/R/gof.R | 27
copula-0.999-0/copula/R/gofEVTests.R | 117 +-
copula-0.999-0/copula/R/gofTests.R | 256 ++---
copula-0.999-0/copula/R/graphics.R | 33
copula-0.999-0/copula/R/gumbelCopula.R | 101 +-
copula-0.999-0/copula/R/huslerReissCopula.R | 106 +-
copula-0.999-0/copula/R/indepCopula.R | 49 -
copula-0.999-0/copula/R/indepTests.R | 419 ++------
copula-0.999-0/copula/R/joeCopula.R |only
copula-0.999-0/copula/R/mvdc.R | 31
copula-0.999-0/copula/R/nacopula.R | 165 ++-
copula-0.999-0/copula/R/normalCopula.R | 44
copula-0.999-0/copula/R/plackettCopula.R | 43
copula-0.999-0/copula/R/schlatherCopula.R | 42
copula-0.999-0/copula/R/special-func.R | 14
copula-0.999-0/copula/R/tCopula.R | 44
copula-0.999-0/copula/R/tawnCopula.R | 55 -
copula-0.999-0/copula/R/tevCopula.R | 65 -
copula-0.999-0/copula/R/trafos.R | 44
copula-0.999-0/copula/TODO | 248 +++--
copula-0.999-0/copula/demo/00Index | 5
copula-0.999-0/copula/demo/GIG-demo.R | 2
copula-0.999-0/copula/demo/fitting-tests.R |only
copula-0.999-0/copula/demo/gofCopula.R | 4
copula-0.999-0/copula/demo/logL-vis.R | 19
copula-0.999-0/copula/demo/polyGJ.R | 2
copula-0.999-0/copula/do-now.org |only
copula-0.999-0/copula/feature-table.org |only
copula-0.999-0/copula/inst/Rsource/GIG.R | 19
copula-0.999-0/copula/inst/Rsource/dnac.R | 18
copula-0.999-0/copula/inst/Rsource/ggraph-tools.R | 6
copula-0.999-0/copula/inst/Rsource/wrapper.R | 8
copula-0.999-0/copula/inst/doc/Frank-Rmpfr.Rnw | 162 +--
copula-0.999-0/copula/inst/doc/Frank-Rmpfr.pdf |binary
copula-0.999-0/copula/inst/doc/nacopula-pkg.Rnw | 8
copula-0.999-0/copula/inst/doc/nacopula-pkg.pdf |binary
copula-0.999-0/copula/inst/docs/mathnb/check2Ivan.R | 24
copula-0.999-0/copula/inst/docs/obsolete/localpower.R | 42
copula-0.999-0/copula/inst/docs/obsolete/oldgof.R | 162 +--
copula-0.999-0/copula/inst/docs/obsolete/skewNormalCopula.R | 18
copula-0.999-0/copula/inst/docs/obsolete/varEstCopula.R | 22
copula-0.999-0/copula/inst/docs/tauRho |only
copula-0.999-0/copula/man/An.Rd |only
copula-0.999-0/copula/man/Bernoulli.Rd | 9
copula-0.999-0/copula/man/Copula.Rd | 231 ++--
copula-0.999-0/copula/man/K.Rd | 27
copula-0.999-0/copula/man/Mvdc.Rd | 52 -
copula-0.999-0/copula/man/Sibuya.Rd | 37
copula-0.999-0/copula/man/Stirling.Rd | 5
copula-0.999-0/copula/man/absdpsiMC.Rd |only
copula-0.999-0/copula/man/acopula-class.Rd | 36
copula-0.999-0/copula/man/allComp.Rd | 2
copula-0.999-0/copula/man/archmCopula-class.Rd | 58 -
copula-0.999-0/copula/man/archmCopula.Rd | 76 -
copula-0.999-0/copula/man/assocMeasures.Rd | 197 ++--
copula-0.999-0/copula/man/beta.Blomqvist.Rd | 14
copula-0.999-0/copula/man/cacopula.Rd | 7
copula-0.999-0/copula/man/contour-methods.Rd | 26
copula-0.999-0/copula/man/copFamilies.Rd | 4
copula-0.999-0/copula/man/copula-class.Rd | 44
copula-0.999-0/copula/man/copula-internal.Rd | 9
copula-0.999-0/copula/man/dDiag.Rd | 8
copula-0.999-0/copula/man/dnacopula.Rd | 13
copula-0.999-0/copula/man/ellipCopula-class.Rd | 30
copula-0.999-0/copula/man/ellipCopula.Rd | 17
copula-0.999-0/copula/man/emde.Rd | 18
copula-0.999-0/copula/man/emle.Rd | 16
copula-0.999-0/copula/man/empcop.Rd |only
copula-0.999-0/copula/man/enacopula.Rd | 31
copula-0.999-0/copula/man/estim-misc.Rd | 11
copula-0.999-0/copula/man/evCopula-class.Rd | 52 -
copula-0.999-0/copula/man/evCopula.Rd | 68 -
copula-0.999-0/copula/man/evTestA.Rd | 26
copula-0.999-0/copula/man/evTestC.Rd | 34
copula-0.999-0/copula/man/evTestK.Rd | 20
copula-0.999-0/copula/man/exchEVTest.Rd | 50 -
copula-0.999-0/copula/man/exchTest.Rd | 36
copula-0.999-0/copula/man/fgmCopula-class.Rd | 15
copula-0.999-0/copula/man/fgmCopula.Rd | 21
copula-0.999-0/copula/man/fitCopula-class.Rd | 49 -
copula-0.999-0/copula/man/fitCopula.Rd | 38
copula-0.999-0/copula/man/fitMvdc.Rd | 49 -
copula-0.999-0/copula/man/generator-methods.Rd | 185 ++-
copula-0.999-0/copula/man/getAcop.Rd | 2
copula-0.999-0/copula/man/gnacopula.Rd | 33
copula-0.999-0/copula/man/gofCopula.Rd | 58 -
copula-0.999-0/copula/man/gofEVCopula.Rd | 50 -
copula-0.999-0/copula/man/gtrafo.Rd | 14
copula-0.999-0/copula/man/indepCopula-class.Rd | 12
copula-0.999-0/copula/man/indepCopula.Rd | 9
copula-0.999-0/copula/man/indepTest.Rd | 60 -
copula-0.999-0/copula/man/initOpt.Rd | 6
copula-0.999-0/copula/man/interval-class.Rd | 4
copula-0.999-0/copula/man/interval.Rd | 2
copula-0.999-0/copula/man/log1mexp.Rd | 4
copula-0.999-0/copula/man/loss.Rd | 11
copula-0.999-0/copula/man/math-fun.Rd | 12
copula-0.999-0/copula/man/multIndepTest.Rd | 55 -
copula-0.999-0/copula/man/multSerialIndepTest.Rd | 61 -
copula-0.999-0/copula/man/mvdc-class.Rd | 6
copula-0.999-0/copula/man/nacPairthetas.Rd | 7
copula-0.999-0/copula/man/nacopula-class.Rd | 10
copula-0.999-0/copula/man/nesdepth.Rd | 2
copula-0.999-0/copula/man/onacopula.Rd | 2
copula-0.999-0/copula/man/opower.Rd | 13
copula-0.999-0/copula/man/persp-methods.Rd | 23
copula-0.999-0/copula/man/plackettCopula.Rd | 2
copula-0.999-0/copula/man/pnacopula.Rd | 6
copula-0.999-0/copula/man/polylog.Rd | 21
copula-0.999-0/copula/man/polynEval.Rd | 5
copula-0.999-0/copula/man/printNacopula.Rd | 2
copula-0.999-0/copula/man/prob.Rd | 18
copula-0.999-0/copula/man/rF01FrankJoe.Rd | 12
copula-0.999-0/copula/man/rFFrankJoe.Rd | 18
copula-0.999-0/copula/man/rdj.Rd | 7
copula-0.999-0/copula/man/retstable.Rd | 16
copula-0.999-0/copula/man/rlog.Rd | 2
copula-0.999-0/copula/man/rnacModel.Rd | 7
copula-0.999-0/copula/man/rnacopula.Rd | 30
copula-0.999-0/copula/man/rnchild.Rd | 2
copula-0.999-0/copula/man/rstable1.Rd | 2
copula-0.999-0/copula/man/safeUroot.Rd | 2
copula-0.999-0/copula/man/serialIndepTest.Rd | 48 -
copula-0.999-0/copula/man/setTheta.Rd | 39
copula-0.999-0/copula/man/show-methods.Rd | 6
copula-0.999-0/copula/man/splom2.Rd | 8
copula-0.999-0/copula/man/summary-methods.Rd | 5
copula-0.999-0/copula/man/tauAMH.Rd | 13
copula-0.999-0/copula/man/timing.Rd | 2
copula-0.999-0/copula/man/uranium.Rd | 34
copula-0.999-0/copula/misc/evtest_unused.R |only
copula-0.999-0/copula/misc/evtest_unused.c |only
copula-0.999-0/copula/src/An.c |only
copula-0.999-0/copula/src/An.h |only
copula-0.999-0/copula/src/cop_gsl.h | 10
copula-0.999-0/copula/src/copula.h | 25
copula-0.999-0/copula/src/ecIndepTest.c |only
copula-0.999-0/copula/src/empcop.c |only
copula-0.999-0/copula/src/empcop.h |only
copula-0.999-0/copula/src/evtest.c | 570 ++----------
copula-0.999-0/copula/src/exchtest.c | 181 ++-
copula-0.999-0/copula/src/fgm.c | 191 ++--
copula-0.999-0/copula/src/gof.c | 296 ++----
copula-0.999-0/copula/src/gof.h | 4
copula-0.999-0/copula/src/indepTest_utils.c |only
copula-0.999-0/copula/src/indepTests.h |only
copula-0.999-0/copula/src/init.c | 89 +
copula-0.999-0/copula/src/logseries.c | 33
copula-0.999-0/copula/src/multIndepTest.c |only
copula-0.999-0/copula/src/multSerialIndepTest.c |only
copula-0.999-0/copula/src/polyn_eval.c | 8
copula-0.999-0/copula/src/rF01Frank.c | 7
copula-0.999-0/copula/src/rF01Joe.c | 9
copula-0.999-0/copula/src/rLog.c | 6
copula-0.999-0/copula/src/rSibuya.c | 4
copula-0.999-0/copula/src/retstable.c | 34
copula-0.999-0/copula/src/serialIndepTest.c |only
copula-0.999-0/copula/src/set_utils.c |only
copula-0.999-0/copula/src/set_utils.h |only
copula-0.999-0/copula/tests/Stirling-etc.R | 3
copula-0.999-0/copula/tests/copula-play.R | 60 -
copula-0.999-0/copula/tests/estim-ex.R | 3
copula-0.999-0/copula/tests/moments.R |only
copula-0.999-0/copula/tests/nac-experi.R | 40
copula-0.999-0/copula/tests/pdf.R | 38
copula-0.999-0/copula/tests/tail-pcopula.R | 18
copula-0.999-0/copula/tests/tail-pcopula.Rout.save | 34
210 files changed, 4514 insertions(+), 4204 deletions(-)
Title: trio package without Fortran code
Diff between trio versions 1.5.0 dated 2012-04-23 and 1.7.0 dated 2012-07-30
Description: Testing SNPs and SNP interactions with a genotypic TDT.
This package furthermore contains functions for computing
pairwise values of LD measures and for identifying LD blocks,
as well as functions for setting up matched case pseudo-control
genotype data for case-parent trios in order to run trio logic
regreesion, to impute missing genotypes in trios, or to
simulate case-parent trios with disease risk dependent on SNP
interaction.
Author: Holger Schwender, Qing Li, Christoph Neumann, Ingo Ruczinski
Maintainer: Holger Schwender
trio-1.5.0/trio/src |only
trio-1.7.0/trio/DESCRIPTION | 16 ++++++++--------
trio-1.7.0/trio/MD5 | 22 ++++++++++------------
trio-1.7.0/trio/NAMESPACE | 8 +++++---
trio-1.7.0/trio/R/trio.power.R |only
trio-1.7.0/trio/R/trioFS.R | 16 ++++++----------
trio-1.7.0/trio/R/trioLR.R | 38 ++++++++++++++++++++++----------------
trio-1.7.0/trio/R/zzz.R | 6 +++---
trio-1.7.0/trio/inst/doc/trio.pdf |binary
trio-1.7.0/trio/man/trio.power.Rd |only
trio-1.7.0/trio/man/trioFS.Rd | 29 ++++++++++++++++++++++++++++-
trio-1.7.0/trio/man/trioLR.Rd | 34 ++++++++++++++++++++++++++++++----
12 files changed, 112 insertions(+), 57 deletions(-)
Title: A Package for Running jags from R
Diff between R2jags versions 0.03-07 dated 2012-06-30 and 0.03-08 dated 2012-07-30
Description: Using this package to call jags from R.
Author: Yu-Sung Su
Maintainer: Yu-Sung Su
CHANGELOG | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/jags.R | 9 +++++++--
4 files changed, 19 insertions(+), 9 deletions(-)
Title: Analysis of Oceanographic data
Diff between oce versions 0.8-10 dated 2012-06-12 and 0.9-2 dated 2012-07-30
Description: Supports the analysis of Oceanographic data, including ADP
measurements, CTD measurements, sectional data, sea-level time
series, coastline files, etc. Provides functions for
calculating seawater properties such as potential temperature
and density, as well as derived properties such as buoyancy
frequency and dynamic height.
Author: Dan Kelley
Maintainer: Dan Kelley
oce-0.8-10/oce/.gitignore |only
oce-0.8-10/oce/inst/doc/.Rhistory |only
oce-0.8-10/oce/inst/doc/.gitignore |only
oce-0.8-10/oce/inst/doc/.tex |only
oce-0.8-10/oce/inst/doc/ctd-object.svg |only
oce-0.8-10/oce/man/figures/.Rhistory |only
oce-0.8-10/oce/man/magic.Rd |only
oce-0.8-10/oce/man/oce.plot.sticks.Rd |only
oce-0.8-10/oce/man/stickplot.Rd |only
oce-0.8-10/oce/web |only
oce-0.9-2/oce/DESCRIPTION | 8
oce-0.9-2/oce/MD5 | 165 ++++-----
oce-0.9-2/oce/NAMESPACE | 30 -
oce-0.9-2/oce/NEWS | 15
oce-0.9-2/oce/R/cm.R | 311 ++++++++---------
oce-0.9-2/oce/R/ctd.R | 4
oce-0.9-2/oce/R/echosounder.R | 19 -
oce-0.9-2/oce/R/imagep.R | 28 +
oce-0.9-2/oce/R/lobo.R | 92 ++---
oce-0.9-2/oce/R/misc.R | 130 ++++---
oce-0.9-2/oce/R/oce.R | 64 ++-
oce-0.9-2/oce/R/sealevel.R | 346 +++++++++----------
oce-0.9-2/oce/R/section.R | 2
oce-0.9-2/oce/R/spectral.R | 6
oce-0.9-2/oce/R/sw.R | 12
oce-0.9-2/oce/R/tidem.R | 153 ++++----
oce-0.9-2/oce/R/topo.R | 523 ++++++++++++++---------------
oce-0.9-2/oce/R/windrose.R | 194 +++++-----
oce-0.9-2/oce/data/RRprofile.rda |binary
oce-0.9-2/oce/data/a03.rda |binary
oce-0.9-2/oce/data/adp.rda |binary
oce-0.9-2/oce/data/adv.rda |binary
oce-0.9-2/oce/data/airHalifax.rda |binary
oce-0.9-2/oce/data/cm.rda |binary
oce-0.9-2/oce/data/coastlineHalifax.rda |binary
oce-0.9-2/oce/data/coastlineMaritimes.rda |binary
oce-0.9-2/oce/data/coastlineSLE.rda |binary
oce-0.9-2/oce/data/coastlineWorld.rda |binary
oce-0.9-2/oce/data/ctd.rda |binary
oce-0.9-2/oce/data/ctdRaw.rda |binary
oce-0.9-2/oce/data/datalist | 2
oce-0.9-2/oce/data/drag.rda |binary
oce-0.9-2/oce/data/drifter.rda |binary
oce-0.9-2/oce/data/echosounder.rda |binary
oce-0.9-2/oce/data/geosecs235.rda |binary
oce-0.9-2/oce/data/giss.rda |only
oce-0.9-2/oce/data/lisst.rda |binary
oce-0.9-2/oce/data/lobo.rda |binary
oce-0.9-2/oce/data/met.rda |binary
oce-0.9-2/oce/data/munk.rda |binary
oce-0.9-2/oce/data/redfieldNC.rda |binary
oce-0.9-2/oce/data/redfieldNP.rda |binary
oce-0.9-2/oce/data/redfieldPlankton.rda |binary
oce-0.9-2/oce/data/riley.rda |binary
oce-0.9-2/oce/data/schmitt.rda |binary
oce-0.9-2/oce/data/sealevelHalifax.rda |binary
oce-0.9-2/oce/data/sealevelTuktoyaktuk.rda |binary
oce-0.9-2/oce/data/section.rda |binary
oce-0.9-2/oce/data/soi.rda |binary
oce-0.9-2/oce/data/tdr.rda |binary
oce-0.9-2/oce/data/tidedata.rda |binary
oce-0.9-2/oce/data/topo2.rda |only
oce-0.9-2/oce/data/topoMaritimes.rda |binary
oce-0.9-2/oce/data/topoWorld.rda |binary
oce-0.9-2/oce/data/wilson.rda |binary
oce-0.9-2/oce/data/wind.rda |binary
oce-0.9-2/oce/inst/doc/ctd-object.pdf |binary
oce-0.9-2/oce/inst/doc/oce-ctdfig.pdf |only
oce-0.9-2/oce/inst/doc/oce-ctdrawfig.pdf |only
oce-0.9-2/oce/inst/doc/oce.pdf |binary
oce-0.9-2/oce/inst/doc/pt.png |only
oce-0.9-2/oce/man/drag.Rd | 8
oce-0.9-2/oce/man/errorbars.Rd |only
oce-0.9-2/oce/man/figures/starCoords.png |only
oce-0.9-2/oce/man/giss.Rd |only
oce-0.9-2/oce/man/imagep.Rd | 19 -
oce-0.9-2/oce/man/matrixSmooth.Rd | 8
oce-0.9-2/oce/man/oce.plot.ts.Rd | 11
oce-0.9-2/oce/man/oceContour.Rd | 22 -
oce-0.9-2/oce/man/oceMagic.Rd |only
oce-0.9-2/oce/man/plot.cm.Rd | 4
oce-0.9-2/oce/man/plot.echosounder.Rd | 6
oce-0.9-2/oce/man/plot.lobo.Rd | 4
oce-0.9-2/oce/man/plot.sealevel.Rd | 4
oce-0.9-2/oce/man/plot.tidem.Rd | 4
oce-0.9-2/oce/man/plot.topo.Rd | 6
oce-0.9-2/oce/man/plot.windrose.Rd | 8
oce-0.9-2/oce/man/plotPolar.Rd |only
oce-0.9-2/oce/man/plotSticks.Rd |only
oce-0.9-2/oce/man/plotTaylor.Rd | 15
oce-0.9-2/oce/man/read.adv.Rd | 2
oce-0.9-2/oce/man/read.oce.Rd | 4
oce-0.9-2/oce/man/section-class.Rd | 2
oce-0.9-2/oce/man/soi.Rd | 5
oce-0.9-2/oce/man/tidem.Rd | 13
oce-0.9-2/oce/man/topo2.Rd |only
oce-0.9-2/oce/src/sw.c | 1
97 files changed, 1192 insertions(+), 1058 deletions(-)
Title: Calibrating Parameters for the Samejima's Continuous IRT Model
Diff between EstCRM versions 1.2 dated 2012-02-06 and 1.3 dated 2012-07-30
Description: The EstCRM package estimates item and person parameters
for the Samejima's Continuous Response Model (CRM), computes
item fit residual statistics, draws empirical 3D item category
response curves, draws theoretical 3D item category response
curves, and generates data under the CRM for simulation
studies.
Author: Cengiz Zopluoglu
Maintainer: Cengiz Zopluoglu
DESCRIPTION | 20 ++++++++++----------
MD5 | 8 ++++----
NEWS | 7 +++++--
R/print.CRM.R | 9 ++++++++-
man/EstCRM-package.Rd | 4 ++--
5 files changed, 29 insertions(+), 19 deletions(-)
Title: The Analysis of Biological Data
Diff between abd versions 0.2-2 dated 2012-04-04 and 0.2-4 dated 2012-07-30
Description: The abd package contains data sets and sample code for The
Analysis of Biological Data by Michael Whitlock and Dolph
Schluter (2009; Roberts & Company Publishers).
Author: Kevin M. Middleton
Maintainer: Kevin M. Middleton
abd-0.2-2/abd/.gitignore |only
abd-0.2-2/abd/README.md |only
abd-0.2-2/abd/abd.Rproj |only
abd-0.2-2/abd/demo/examples.R |only
abd-0.2-4/abd/DESCRIPTION | 12 -
abd-0.2-4/abd/MD5 | 303 +++++++++++++--------------
abd-0.2-4/abd/R/datasets.R | 121 ++++------
abd-0.2-4/abd/data/AlgaeCO2.rda |binary
abd-0.2-4/abd/data/Antilles.rda |binary
abd-0.2-4/abd/data/Aspirin.rda |binary
abd-0.2-4/abd/data/BeeGenes.rda |binary
abd-0.2-4/abd/data/BeeLifespans.rda |binary
abd-0.2-4/abd/data/Beetles.rda |binary
abd-0.2-4/abd/data/BirdSexRatio.rda |binary
abd-0.2-4/abd/data/Blackbirds.rda |binary
abd-0.2-4/abd/data/BodyFatHeatLoss.rda |binary
abd-0.2-4/abd/data/BrainExpression.rda |binary
abd-0.2-4/abd/data/BrookTrout.rda |binary
abd-0.2-4/abd/data/BrookTrout2.rda |binary
abd-0.2-4/abd/data/Cavalry.rda |binary
abd-0.2-4/abd/data/Chickadees.rda |binary
abd-0.2-4/abd/data/ChimpBrains.rda |binary
abd-0.2-4/abd/data/Cichlids.rda |binary
abd-0.2-4/abd/data/CichlidsGnRH.rda |binary
abd-0.2-4/abd/data/Clearcuts.rda |binary
abd-0.2-4/abd/data/CocaineDopamine.rda |binary
abd-0.2-4/abd/data/Convictions.rda |binary
abd-0.2-4/abd/data/ConvictionsAndIncome.rda |binary
abd-0.2-4/abd/data/Crickets.rda |binary
abd-0.2-4/abd/data/DEET.rda |binary
abd-0.2-4/abd/data/DaphniaLongevity.rda |binary
abd-0.2-4/abd/data/DaphniaResistance.rda |binary
abd-0.2-4/abd/data/DayOfBirth.rda |binary
abd-0.2-4/abd/data/DesertBirds.rda |binary
abd-0.2-4/abd/data/Dioecy.rda |binary
abd-0.2-4/abd/data/Dolphins.rda |binary
abd-0.2-4/abd/data/DungBeetles.rda |binary
abd-0.2-4/abd/data/Earthworms.rda |binary
abd-0.2-4/abd/data/Earwigs.rda |binary
abd-0.2-4/abd/data/Eelgrass.rda |binary
abd-0.2-4/abd/data/ElVerde.rda |binary
abd-0.2-4/abd/data/ElectricFish.rda |binary
abd-0.2-4/abd/data/EndangeredSpecies.rda |binary
abd-0.2-4/abd/data/FingerRatio.rda |binary
abd-0.2-4/abd/data/Fireflies.rda |binary
abd-0.2-4/abd/data/FireflyFlash.rda |binary
abd-0.2-4/abd/data/FlyTestes.rda |binary
abd-0.2-4/abd/data/FlycatcherPatch.rda |binary
abd-0.2-4/abd/data/GeneRegulation.rda |binary
abd-0.2-4/abd/data/GlidingSnakes.rda |binary
abd-0.2-4/abd/data/GodwitArrival.rda |binary
abd-0.2-4/abd/data/Grassland.rda |binary
abd-0.2-4/abd/data/GreatTitMalaria.rda |binary
abd-0.2-4/abd/data/Greenspace.rda |binary
abd-0.2-4/abd/data/Guppies.rda |binary
abd-0.2-4/abd/data/Hemoglobin.rda |binary
abd-0.2-4/abd/data/HippocampusLesions.rda |binary
abd-0.2-4/abd/data/HornedLizards.rda |binary
abd-0.2-4/abd/data/HumanBodyTemp.rda |binary
abd-0.2-4/abd/data/HumanGeneLengths.rda |binary
abd-0.2-4/abd/data/Hurricanes.rda |binary
abd-0.2-4/abd/data/Iguanas.rda |binary
abd-0.2-4/abd/data/IntertidalAlgae.rda |binary
abd-0.2-4/abd/data/JetLagKnees.rda |binary
abd-0.2-4/abd/data/KenyaFinches.rda |binary
abd-0.2-4/abd/data/LanguageBrains.rda |binary
abd-0.2-4/abd/data/LarvalFish.rda |binary
abd-0.2-4/abd/data/Lefthanded.rda |binary
abd-0.2-4/abd/data/LionCubs.rda |binary
abd-0.2-4/abd/data/LionNoses.rda |binary
abd-0.2-4/abd/data/LiverPreparation.rda |binary
abd-0.2-4/abd/data/LizardBite.rda |binary
abd-0.2-4/abd/data/LizardSprint.rda |binary
abd-0.2-4/abd/data/Lobsters.rda |binary
abd-0.2-4/abd/data/LodgepolePines.rda |binary
abd-0.2-4/abd/data/LupusMice.rda |binary
abd-0.2-4/abd/data/Lynx.rda |binary
abd-0.2-4/abd/data/MarineReserve.rda |binary
abd-0.2-4/abd/data/MassExtinctions.rda |binary
abd-0.2-4/abd/data/MoleRats.rda |binary
abd-0.2-4/abd/data/Mosquitoes.rda |binary
abd-0.2-4/abd/data/MouseEmpathy.rda |binary
abd-0.2-4/abd/data/NeanderthalBrains.rda |binary
abd-0.2-4/abd/data/NematodeLifespan.rda |binary
abd-0.2-4/abd/data/NeotropicalTrees.rda |binary
abd-0.2-4/abd/data/Newts.rda |binary
abd-0.2-4/abd/data/NoSmokingDay.rda |binary
abd-0.2-4/abd/data/NorthSeaCod.rda |binary
abd-0.2-4/abd/data/OstrichTemp.rda |binary
abd-0.2-4/abd/data/Penguins.rda |binary
abd-0.2-4/abd/data/PlantPersistence.rda |binary
abd-0.2-4/abd/data/Pollen.rda |binary
abd-0.2-4/abd/data/Powerball.rda |binary
abd-0.2-4/abd/data/PrimateMetabolism.rda |binary
abd-0.2-4/abd/data/PrimateWBC.rda |binary
abd-0.2-4/abd/data/ProgesteroneExercise.rda |binary
abd-0.2-4/abd/data/Pseudoscorpions.rda |binary
abd-0.2-4/abd/data/Pufferfish.rda |binary
abd-0.2-4/abd/data/Rattlesnakes.rda |binary
abd-0.2-4/abd/data/Rigormortis.rda |binary
abd-0.2-4/abd/data/RopeTrick.rda |binary
abd-0.2-4/abd/data/SagebrushCrickets.rda |binary
abd-0.2-4/abd/data/SalmonColor.rda |binary
abd-0.2-4/abd/data/Seedlings.rda |binary
abd-0.2-4/abd/data/Selection.rda |binary
abd-0.2-4/abd/data/SexualSelection.rda |binary
abd-0.2-4/abd/data/ShadParasites.rda |binary
abd-0.2-4/abd/data/ShrinkingSeals.rda |binary
abd-0.2-4/abd/data/ShuttleDisaster.rda |binary
abd-0.2-4/abd/data/Silversword.rda |binary
abd-0.2-4/abd/data/SleepAndPerformance.rda |binary
abd-0.2-4/abd/data/SockeyeFemales.rda |binary
abd-0.2-4/abd/data/Sparrows.rda |binary
abd-0.2-4/abd/data/SpiderColonies.rda |binary
abd-0.2-4/abd/data/SpiderSpeed.rda |binary
abd-0.2-4/abd/data/Stalkies1.rda |binary
abd-0.2-4/abd/data/Stalkies2.rda |binary
abd-0.2-4/abd/data/SticklebackPlates.rda |binary
abd-0.2-4/abd/data/SticklebackPreference.rda |binary
abd-0.2-4/abd/data/Sumo.rda |binary
abd-0.2-4/abd/data/SyrupSwimming.rda |binary
abd-0.2-4/abd/data/TeenDeaths.rda |binary
abd-0.2-4/abd/data/Telomeres.rda |binary
abd-0.2-4/abd/data/TimeOfDeath.rda |binary
abd-0.2-4/abd/data/Toads.rda |binary
abd-0.2-4/abd/data/Tobacco.rda |binary
abd-0.2-4/abd/data/Tobacco2.rda |binary
abd-0.2-4/abd/data/ToothAge.rda |binary
abd-0.2-4/abd/data/TreeSeedlings.rda |binary
abd-0.2-4/abd/data/Trematodes.rda |binary
abd-0.2-4/abd/data/Trillium.rda |binary
abd-0.2-4/abd/data/Truffles.rda |binary
abd-0.2-4/abd/data/TsetseLearning.rda |binary
abd-0.2-4/abd/data/TwoKids.rda |binary
abd-0.2-4/abd/data/VampireBites.rda |binary
abd-0.2-4/abd/data/VasopressinVoles.rda |binary
abd-0.2-4/abd/data/Vines.rda |binary
abd-0.2-4/abd/data/VoleDispersal.rda |binary
abd-0.2-4/abd/data/WalkingStickFemurs.rda |binary
abd-0.2-4/abd/data/WalkingStickHeads.rda |binary
abd-0.2-4/abd/data/WeddellSeals.rda |binary
abd-0.2-4/abd/data/WillsDebates.rda |binary
abd-0.2-4/abd/data/WillsPresidents.rda |binary
abd-0.2-4/abd/data/WolfTeeth.rda |binary
abd-0.2-4/abd/data/Wolves.rda |binary
abd-0.2-4/abd/data/WorldCup.rda |binary
abd-0.2-4/abd/data/WrasseSexes.rda |binary
abd-0.2-4/abd/data/YeastGenes.rda |binary
abd-0.2-4/abd/data/ZebraFinchBeaks.rda |binary
abd-0.2-4/abd/data/ZebraFinches.rda |binary
abd-0.2-4/abd/data/ZooMortality.rda |binary
abd-0.2-4/abd/data/Zooplankton.rda |binary
abd-0.2-4/abd/data/dataInfo.rda |binary
abd-0.2-4/abd/demo/00Index | 1
abd-0.2-4/abd/man/abd-package.Rd | 6
155 files changed, 215 insertions(+), 228 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-07-30 0.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-24 0.72
2011-12-21 0.71
2011-08-16 0.70
2011-04-28 0.65
2011-03-05 0.6