Title: Hourly interpolation of multiple temperature daily series
Diff between Interpol.T versions 2.0 dated 2012-07-17 and 2.1 dated 2012-08-03
Description: Hourly interpolation of daily minimum and maximum
temperature series. Carries out interpolation on multiple
series ad once. Requires some hourly series for calibration
(alternatively can use default calibration table).
Author: Emanuele Eccel & Emanuele Cordano
Maintainer:
DESCRIPTION | 8 +++----
MD5 | 24 +++++++++++-----------
R/F_Th_int_series.R | 10 ++++++---
R/F_Th_interp.R | 32 ++++++++++++++++++++++--------
R/F_shape_calibration.R | 12 +++++++----
R/InterpolT-package.R | 4 +--
data/Trentino_hourly_T.rda |binary
inst/doc/examples/hourly_interp_T_xmpls.R | 4 +--
man/Interpol.T-package.Rd | 2 -
man/Th_int_series.Rd | 18 +++++++++++++++-
man/Th_interp.Rd | 22 ++++++++++++++++----
man/Trentino_hourly_T.Rd | 2 -
man/shape_calibration.Rd | 24 ++++++++++++++++++----
13 files changed, 116 insertions(+), 46 deletions(-)
Title: Simultaneous inference for diversity indices.
Diff between simboot versions 0.1-6 dated 2012-03-01 and 0.1-65 dated 2012-08-03
Description: Package simboot provides estimation of simultaneous
bootstrap and asymptotic confidence intervals for diversity
indices, namely the Shannon and the Simpson index. Several
pre--specified multiple comparison types are available to
choose. Further user--defined contrast matrices are applicable.
In addition, simboot estimates adjusted as well as unadjusted
p--values for two of the three proposed bootstrap methods.
Further simboot allows for comparing biological diversities of
two or more groups while simultaneously testing a user-defined
selection of Hill numbers of orders q, which are considered as
appropriate and useful indices for measuring diversity.
Author: Ralph Scherer, Philip Pallmann
Maintainer: Ralph Scherer
DESCRIPTION | 20 ++++++++++----------
MD5 | 14 ++++++++------
NEWS | 6 +++++-
R/contrMat.R | 1 -
R/sbdiv.R | 2 +-
data/Bacteria.rda |only
man/Bacteria.Rd |only
man/sbdiv.Rd | 13 ++++++++-----
man/simboot.Rd | 14 +++++++-------
9 files changed, 39 insertions(+), 31 deletions(-)
Title: Methods for SDC (statistical disclosure control) in tabular data
Diff between sdcTable versions 0.10.1 dated 2012-07-11 and 0.10.2 dated 2012-08-03
Description: Implementation of methods for SDC (statistical disclosure
control) in tabular data
Author: Bernhard Meindl
Maintainer: Bernhard Meindl
sdcTable-0.10.1/sdcTable/.project |only
sdcTable-0.10.2/sdcTable/DESCRIPTION | 8 ++--
sdcTable-0.10.2/sdcTable/MD5 | 18 +++++-----
sdcTable-0.10.2/sdcTable/R/helper_functions.r | 33 +++++++++++--------
sdcTable-0.10.2/sdcTable/inst/doc/sdcTable.Rnw | 34 ++++++++++----------
sdcTable-0.10.2/sdcTable/inst/doc/sdcTable.pdf |binary
sdcTable-0.10.2/sdcTable/man/cellInfo.Rd | 4 +-
sdcTable-0.10.2/sdcTable/man/changeCellStatus.Rd | 2 -
sdcTable-0.10.2/sdcTable/man/getInfo.Rd | 10 ++---
sdcTable-0.10.2/sdcTable/man/makeProblem.Rd | 32 +++++++++---------
sdcTable-0.10.2/sdcTable/man/protectLinkedTables.Rd | 18 +++++-----
11 files changed, 83 insertions(+), 76 deletions(-)
Title: Parameter estimation for the averaging model of Information
Integration Theory
Diff between rAverage versions 0.3-5 dated 2011-01-28 and 0.3-6 dated 2012-08-03
Description: Parameter estimation for the Averaging model of Anderson's
Information Integration Theory
Author: Giulio Vidotto
Maintainer: Davide Massidda
DESCRIPTION | 13 ++++++-------
MD5 |only
R/rAverage.R | 2 +-
man/rAverage-package.Rd | 4 ++--
4 files changed, 9 insertions(+), 10 deletions(-)
Title: Multi-View Clustering
Diff between mvc versions 1.1 dated 2012-08-01 and 1.2 dated 2012-08-03
Description: An implementation of Multi-View Clustering (Bickel and
Scheffer, 2004). Documents are generated by drawing word values
from a categorical distribution for each word, given the
cluster. This means words are not counted (multinomial, as in
the paper), but words take on different values from a finite
set of values (categorical). Thus, it implements Mixture of
Categoricals EM (as opposed to Mixture of Multinomials
developed in the paper), and Spherical k-Means. The latter
represents documents as vectors in the categorical space.
Author: Andreas Maunz
Maintainer: Andreas Maunz
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/mvc-utils.R | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
Title: Handling missing values with/in multivariate data analysis
(principal component methods)
Diff between missMDA versions 1.2 dated 2010-10-13 and 1.5 dated 2012-08-03
Description: Imputation of incomplete continuous or categorical
datasets; Missing values are imputed with a principal component
analysis (PCA), a multiple correspondence analysis (MCA) model
or a multiple factor analysis (MFA) model; Perform multiple
imputation with and in PCA
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson
DESCRIPTION | 13 +-
MD5 |only
NAMESPACE |only
R/MIPCA.R | 15 +-
R/imputeAFDM.R |only
R/imputeMCA.R | 102 +++++++-------------
R/imputeMFA.R | 272 ++++++++++++++++++++++++++++++++++++++++--------------
R/imputePCA.R | 65 ++++++------
R/plot.MIPCA.R | 22 +---
man/imputeAFDM.Rd |only
man/imputeMCA.Rd | 15 +-
man/imputeMFA.Rd | 30 ++++-
man/imputePCA.Rd | 6 -
man/vnf.Rd | 12 +-
missMDA-Ex.R |only
15 files changed, 344 insertions(+), 208 deletions(-)
Title: Weighted Correlation Network Analysis
Diff between WGCNA versions 1.22 dated 2012-06-19 and 1.23-1 dated 2012-08-03
Description: Functions necessary to perform Weighted Correlation
Network Analysis
Author: Peter Langfelder
Maintainer: Peter Langfelder
Changelog | 27 +++++++++++
DESCRIPTION | 11 ++--
MD5 | 60 +++++++++++++-----------
R/Functions.R | 85 +++++++++++++++++++++--------------
R/corAndPvalue.R | 4 -
R/coxRegressionResiduals.R | 3 -
R/randomGLMpredictor.R |only
R/userListEnrichment.R | 21 +++++++-
data/BloodLists.rda |binary
data/BrainLists.rda |binary
data/BrainRegionMarkers.rda |only
data/ImmunePathwayLists.rda |only
data/SCsLists.rda |binary
man/BloodLists.Rd | 4 -
man/BrainLists.Rd | 2
man/BrainRegionMarkers.Rd |only
man/ImmunePathwayLists.Rd |only
man/SCsLists.Rd | 2
man/WGCNA-package.Rd | 8 ++-
man/chooseOneHubInEachModule.Rd | 2
man/chooseTopHubInEachModule.Rd | 2
man/coClustering.permutationTest.Rd | 7 +-
man/collapseRows.Rd | 6 +-
man/consensusDissTOMandTree.Rd | 4 -
man/cor.Rd | 7 +-
man/initProgInd.Rd | 37 ++++++---------
man/metaAnalysis.Rd | 5 ++
man/moduleMergeUsingKME.Rd | 12 ++--
man/orderBranchesUsingHubGenes.Rd | 2
man/randomGLMpredictor.Rd |only
man/standardScreeningBinaryTrait.Rd | 4 -
man/standardScreeningNumericTrait.Rd | 13 ++++-
man/swapTwoBranches.Rd | 2
man/userListEnrichment.Rd | 51 ++++++++++++++++-----
34 files changed, 244 insertions(+), 137 deletions(-)
Title: Inverse Regression for Text Analysis
Diff between textir versions 1.8-6 dated 2012-06-12 and 1.8-7 dated 2012-08-03
Description: A suite of tools for text and sentiment mining. This
includes the `mnlm' function, for sparse multinomial logistic
regression, `pls', a concise partial least squares routine, and
the `topics' function, for efficient estimation and dimension
selection in latent topic models.
Author: Matt Taddy
Maintainer: Matt Taddy
ChangeLog | 8 ++++-
DESCRIPTION | 8 ++---
MD5 | 10 +++---
R/mnlm.R | 17 ++++-------
R/tpx.R | 2 -
src/mnlogit.c | 84 ++++++++++++++++++++++++++++++++++++++++++----------------
6 files changed, 86 insertions(+), 43 deletions(-)
Title: Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R".
Diff between spuRs versions 1.0.4 dated 2009-12-30 and 1.0.5 dated 2012-08-03
Description: This package provides functions and datasets from the book
"Introduction to Scientific Programming and Simulation Using
R".
Author: Owen Jones, Robert Maillardet, Andrew Robinson, Olga Borovkova,
and Steven Carnie
Maintainer: Andrew Robinson
DESCRIPTION | 10 +++++-----
MD5 |only
NAMESPACE |only
R/newtonraphson_show.R | 3 ++-
data/kew.rda |binary
data/treeg.rda |binary
data/trees.rda |binary
data/ufc.plots.rda |binary
data/ufc.rda |binary
inst/resources/errata.pdf |binary
inst/resources/scripts/quad1.r | 2 +-
11 files changed, 8 insertions(+), 7 deletions(-)
Title: Builds and analyses Integral Projection Models (IPMs).
Diff between IPMpack versions 1.2 dated 2012-06-05 and 1.3 dated 2012-08-03
Description: IPMpack takes demographic vital rates and (optionally)
environmental data to build integral projection models. A
number of functional forms for growth and survival can be
incorporated, as well as a range of reproductive strategies.
The package also includes a suite of diagnostic routines,
provides classic matrix model output (e.g., lambda,
elasticities, sensitivities), and produces post-hoc metrics
(e.g., passage time and life expectancy).
Author: CJE Metcalf, SM McMahon, R Salguero-Gomez, E Jongejans
Maintainer: IPMpack team
IPMpack-1.2/IPMpack/R/.metadata |only
IPMpack-1.2/IPMpack/man/HyperDataSubset.csv.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCov-class.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCovDeclineVar-class.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCovIncr-class.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCovIncrDeclineVar-class.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCovLogIncr-class.Rd |only
IPMpack-1.2/IPMpack/man/growthObjMultiCovLogIncrDeclineVar-class.Rd |only
IPMpack-1.2/IPMpack/man/makeGrowthObjManyCov.Rd |only
IPMpack-1.2/IPMpack/man/makeSurvObjManyCov.Rd |only
IPMpack-1.2/IPMpack/man/survObjMultiCov-class.Rd |only
IPMpack-1.3/IPMpack/DESCRIPTION | 8
IPMpack-1.3/IPMpack/MD5 | 122 -
IPMpack-1.3/IPMpack/R/IPMpack-Base.r | 599 +++-----
IPMpack-1.3/IPMpack/R/IPMpack-Impl.r | 719 ++--------
IPMpack-1.3/IPMpack/R/IPMpack-Util.r | 241 ++-
IPMpack-1.3/IPMpack/data/cryptaDataCovSubset.csv.gz |only
IPMpack-1.3/IPMpack/data/datalist |only
IPMpack-1.3/IPMpack/data/hyperDataCovSubset.csv.gz |only
IPMpack-1.3/IPMpack/doc/IPMpack_Vignette.pdf |binary
IPMpack-1.3/IPMpack/inst/doc/IPMpack_Vignette.Rnw | 418 +++--
IPMpack-1.3/IPMpack/inst/doc/IPMpack_Vignette.pdf |binary
IPMpack-1.3/IPMpack/man/IPMpack-package.Rd | 4
IPMpack-1.3/IPMpack/man/R0Calc.Rd | 2
IPMpack-1.3/IPMpack/man/addPdfGrowthPic.Rd | 5
IPMpack-1.3/IPMpack/man/coerceGrowthObj.Rd |only
IPMpack-1.3/IPMpack/man/createCompoundFmatrix.Rd | 29
IPMpack-1.3/IPMpack/man/createCompoundTmatrix.Rd | 15
IPMpack-1.3/IPMpack/man/createIPMCmatrix.Rd | 9
IPMpack-1.3/IPMpack/man/createIPMFmatrix.Rd | 9
IPMpack-1.3/IPMpack/man/createIPMTmatrix.Rd | 8
IPMpack-1.3/IPMpack/man/cryptaDataCovSubset.csv.Rd |only
IPMpack-1.3/IPMpack/man/diagnosticsTmatrix.Rd | 11
IPMpack-1.3/IPMpack/man/getIPMoutput.Rd | 4
IPMpack-1.3/IPMpack/man/getIPMoutputDirect.Rd | 3
IPMpack-1.3/IPMpack/man/growSurv.Rd | 4
IPMpack-1.3/IPMpack/man/growth-methods.Rd | 107 -
IPMpack-1.3/IPMpack/man/growth.Rd | 6
IPMpack-1.3/IPMpack/man/growthCum-methods.Rd | 28
IPMpack-1.3/IPMpack/man/growthCum.Rd | 4
IPMpack-1.3/IPMpack/man/growthModelComp.Rd | 11
IPMpack-1.3/IPMpack/man/growthObjDeclineVar-class.Rd | 4
IPMpack-1.3/IPMpack/man/growthObjIncr-class.Rd | 4
IPMpack-1.3/IPMpack/man/growthObjIncrDeclineVar-class.Rd | 4
IPMpack-1.3/IPMpack/man/growthObjLogIncr-class.Rd | 4
IPMpack-1.3/IPMpack/man/growthObjLogIncrDeclineVar-class.Rd | 4
IPMpack-1.3/IPMpack/man/growthObjPois.Rd |only
IPMpack-1.3/IPMpack/man/growthObjTruncIncr-class.Rd | 4
IPMpack-1.3/IPMpack/man/hyperDataCovSubset.csv.Rd |only
IPMpack-1.3/IPMpack/man/hyperDataSubset.csv.Rd |only
IPMpack-1.3/IPMpack/man/largeMatrixCalc.Rd | 9
IPMpack-1.3/IPMpack/man/makeClonalObj.Rd | 29
IPMpack-1.3/IPMpack/man/makeFecObj.Rd | 20
IPMpack-1.3/IPMpack/man/makeGrowthObj.Rd | 33
IPMpack-1.3/IPMpack/man/makeListIPMs.Rd | 14
IPMpack-1.3/IPMpack/man/makeListTmatrix.Rd | 5
IPMpack-1.3/IPMpack/man/makePostSurvivalObjs.Rd | 6
IPMpack-1.3/IPMpack/man/makeSurvObj.Rd | 12
IPMpack-1.3/IPMpack/man/meanLifeExpect.Rd | 4
IPMpack-1.3/IPMpack/man/plotGrowthModelComp.Rd | 13
IPMpack-1.3/IPMpack/man/sensParams.Rd | 5
IPMpack-1.3/IPMpack/man/simulateCarlina.Rd |only
IPMpack-1.3/IPMpack/man/stochGrowthRateManyCov.Rd | 22
IPMpack-1.3/IPMpack/man/stochGrowthRateSampleList.Rd | 2
IPMpack-1.3/IPMpack/man/stochGrowthRateSampleListDD.Rd |only
IPMpack-1.3/IPMpack/man/stochPassageTime.Rd | 4
IPMpack-1.3/IPMpack/man/surv-methods.Rd | 16
IPMpack-1.3/IPMpack/man/surv.Rd | 4
IPMpack-1.3/IPMpack/man/survObj-class.Rd | 2
IPMpack-1.3/IPMpack/man/survivorship.Rd | 4
IPMpack-1.3/IPMpack/man/timeToSize.Rd | 4
IPMpack-1.3/IPMpack/man/trackPopStructManyCov.Rd | 8
IPMpack-1.3/IPMpack/vignettes/IPMpack_Vignette.Rnw | 418 +++--
73 files changed, 1492 insertions(+), 1532 deletions(-)
Title: Categorical Randomized Block Data Analysis
Diff between crblocks versions 0.9-0 dated 2012-07-31 and 0.9-1 dated 2012-08-03
Description: Implements a statistical test for comparing bar plots or
histograms of categorical data derived from a randomized block
repeated measures layout.
Author: David Allingham, D.J. Best
Maintainer: David Allingham
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/crblocks.R | 2 --
man/crblocks.Rd | 29 +++++++++++++++--------------
4 files changed, 21 insertions(+), 22 deletions(-)
Title: Conjoint analysis package
Diff between conjoint versions 1.33 dated 2011-10-02 and 1.34 dated 2012-08-03
Description: Conjoint is a simple package that implements a conjoint
analysis method to measure the preferences.
Author: Andrzej Bak
Maintainer: Tomasz Bartlomowicz
DESCRIPTION | 9 ++++-----
MD5 | 8 ++++++--
NAMESPACE | 2 +-
R/caEncodedDesign.R |only
R/caFactorialDesign.R |only
man/caEncodedDesign.Rd |only
man/caFactorialDesign.Rd |only
7 files changed, 11 insertions(+), 8 deletions(-)
Title: Ferguson-Klass type algorithm for posterior normalized random
measures
Diff between BNPdensity versions 0.7.8 dated 2011-10-08 and 0.7.9 dated 2012-08-03
Description: Ferguson-Klass type algorithm for posterior normalized
random measures
Author: I. Prunster and L. E. Nieto. R implementation by Ernesto
Barrios
Maintainer: Ernesto Barrios
BNPdensity-Ex.R |only
CHANGES |only
DESCRIPTION | 10 +++++-----
MD5 | 27 +++++++++++++++------------
NAMESPACE | 1 +
R/gs4.R | 4 ++--
R/gsYZstar.R | 4 ++--
TODO |only
data/Enzyme1.out.rda |binary
data/Enzyme2.out.rda |binary
data/Galaxy1.out.rda |binary
data/Galaxy2.out.rda |binary
data/acidity.rda |binary
data/enzyme.rda |binary
data/galaxy.rda |binary
man/BNPdensity-package.Rd | 4 ++--
16 files changed, 27 insertions(+), 23 deletions(-)