Title: Multiple imputation for multivariate panel or clustered data
Diff between pan versions 0.4 dated 2012-03-19 and 0.5 dated 2012-08-06
Description: Multiple imputation for multivariate panel or clustered
data
Author: Joseph L. Schafer
Maintainer: Jing hua Zhao
pan-0.4/pan/inst/tests |only
pan-0.5/pan/ChangeLog | 8 ++
pan-0.5/pan/DESCRIPTION | 10 +--
pan-0.5/pan/MD5 | 19 +++---
pan-0.5/pan/data |only
pan-0.5/pan/inst/CITATION |only
pan-0.5/pan/inst/doc/pan-tr.Rnw | 35 ++++++++++-
pan-0.5/pan/inst/doc/pan-tr.pdf |binary
pan-0.5/pan/inst/doc/tr9704.pdf |binary
pan-0.5/pan/man/ecme.Rd | 46 ++++++++++++--
pan-0.5/pan/man/marijuana.Rd |only
pan-0.5/pan/man/pan.Rd | 126 +++++++++++++++++++++++++++++++++-------
12 files changed, 200 insertions(+), 44 deletions(-)
Title: Monte Carlo Standard Errors for MCMC
Diff between mcmcse versions 0.1 dated 2012-05-18 and 1.0-1 dated 2012-08-06
Description: mcmcse provides tools for computing Monte Carlo standard
errors (MCSE) in Markov chain Monte Carlo (MCMC) settings. MCSE
computation for expectation and quantile estimators is
supported. The package also provides functions for computing
effective sample size and for plotting Monte Carlo estimates
versus sample size.
Author: James M. Flegal
Maintainer: James M. Flegal
mcmcse-0.1/mcmcse/R/mcse.R |only
mcmcse-0.1/mcmcse/R/mcse.q.R |only
mcmcse-0.1/mcmcse/man/mcmcse-package.Rd |only
mcmcse-1.0-1/mcmcse/COPYING |only
mcmcse-1.0-1/mcmcse/DESCRIPTION | 31 ++++---
mcmcse-1.0-1/mcmcse/MD5 | 18 ++--
mcmcse-1.0-1/mcmcse/NAMESPACE | 12 +-
mcmcse-1.0-1/mcmcse/R/mcmcse.R |only
mcmcse-1.0-1/mcmcse/R/zzz.R |only
mcmcse-1.0-1/mcmcse/inst |only
mcmcse-1.0-1/mcmcse/man/ess.Rd |only
mcmcse-1.0-1/mcmcse/man/estvssamp.Rd |only
mcmcse-1.0-1/mcmcse/man/mcse.Rd | 139 ++++++++++++++++++++------------
mcmcse-1.0-1/mcmcse/man/mcse.mat.Rd |only
mcmcse-1.0-1/mcmcse/man/mcse.q.Rd |only
mcmcse-1.0-1/mcmcse/man/mcse.q.mat.Rd |only
16 files changed, 124 insertions(+), 76 deletions(-)
Title: Tuning Insensitive Graph Estimation and Regression
Diff between bigmatrix versions 0.9.1 dated 2012-07-29 and 0.9.2 dated 2012-08-06
Description: The package "bigmatrix" solves for the precision matrix
estimations with two different methods. The first is the tuning
insensitive graph estimation and regression implemented with
scaled Lasso. Another method is by estimating at a grid of
values for the constrained lambda and the augmented Lagrangian
multiplier rho based on constrained L1 minimization for sparse
precision matrix estimation, which guarantees positive definite
output by projected augmented Lagrangian method and further
accelerates the algorithm via coordinate descent and active set
methods.
Author: Xingguo Li, Tuo Zhao, Lie Wang and Han Liu
Maintainer: Xingguo LI
bigmatrix-0.9.1/bigmatrix/man/tiger-package.Rd |only
bigmatrix-0.9.2/bigmatrix/DESCRIPTION | 10 +-
bigmatrix-0.9.2/bigmatrix/MD5 | 34 ++++-----
bigmatrix-0.9.2/bigmatrix/NAMESPACE | 23 ++----
bigmatrix-0.9.2/bigmatrix/R/tiger.R | 78 +++++++++++++--------
bigmatrix-0.9.2/bigmatrix/R/tiger.clime.R | 8 +-
bigmatrix-0.9.2/bigmatrix/R/tiger.cv.R | 15 ++--
bigmatrix-0.9.2/bigmatrix/R/tiger.generator.R | 7 +
bigmatrix-0.9.2/bigmatrix/R/tiger.plot.R | 4 -
bigmatrix-0.9.2/bigmatrix/R/tiger.roc.R | 4 -
bigmatrix-0.9.2/bigmatrix/R/tiger.select.R | 16 ++--
bigmatrix-0.9.2/bigmatrix/R/tiger.slasso.R | 70 +++++++++---------
bigmatrix-0.9.2/bigmatrix/man/bigmatrix-package.Rd |only
bigmatrix-0.9.2/bigmatrix/man/tiger-internal.Rd | 4 +
bigmatrix-0.9.2/bigmatrix/man/tiger.Rd | 37 +++++----
bigmatrix-0.9.2/bigmatrix/man/tiger.generator.Rd | 6 -
bigmatrix-0.9.2/bigmatrix/man/tiger.roc.Rd | 2
bigmatrix-0.9.2/bigmatrix/man/tiger.select.Rd | 2
bigmatrix-0.9.2/bigmatrix/src/tiger_clime.c | 15 ++--
19 files changed, 191 insertions(+), 144 deletions(-)
Title: Classification and regression trees
Diff between tree versions 1.0-30 dated 2012-06-27 and 1.0-31 dated 2012-08-06
Description: Classification and Regression Trees.
Author: Brian Ripley
Maintainer: Brian Ripley
tree-1.0-30/tree/po/R-en@quot.po |only
tree-1.0-30/tree/po/en@quot.po |only
tree-1.0-31/tree/ChangeLog | 18 +++++++++++++
tree-1.0-31/tree/DESCRIPTION | 10 +++----
tree-1.0-31/tree/MD5 | 22 +++++++----------
tree-1.0-31/tree/R/treemisc.R | 5 ++-
tree-1.0-31/tree/inst/po/en@quot/LC_MESSAGES/R-tree.mo |binary
tree-1.0-31/tree/inst/po/en@quot/LC_MESSAGES/tree.mo |binary
tree-1.0-31/tree/inst/po/pl/LC_MESSAGES/tree.mo |binary
tree-1.0-31/tree/po/R-tree.pot | 5 +--
tree-1.0-31/tree/po/pl.po | 4 +--
tree-1.0-31/tree/po/tree.pot | 8 +++---
tree-1.0-31/tree/src/grow.c | 20 ++++++++++-----
13 files changed, 56 insertions(+), 36 deletions(-)
Title: Power and Sample Size Calculations for SNP Association Studies
with Censored Time to Event Outcomes
Diff between survSNP versions 0.21-4 dated 2012-05-05 and 0.21-5 dated 2012-08-06
Description: This package can be used to conduct asymptotic and
empirical power and sample size calculations for SNP
association studies with right censored time to event outcomes
Author: Kouros Owzar, Zhiguo Li, Nancy Cox, Sin-Ho Jung and Chanhee Yi
Maintainer: Kouros Owzar
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++--------
configure | 18 +++++++++---------
configure.in | 2 +-
inst/doc/survSNP.Rnw | 5 +++--
inst/doc/survSNP.pdf |binary
man/survSNP-package.Rd | 2 +-
src/asypow.cpp | 2 +-
src/integration_wrapper.h | 13 +++++++++----
9 files changed, 37 insertions(+), 31 deletions(-)
Title: Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
Diff between notifyR versions 1.01 dated 2012-08-05 and 1.02 dated 2012-08-06
Description: This Package provides a connection to the pushover.net API
to send push notification to your smartphone directly from R.
(ACCOUNT REQUIRED!)
Author: Torben Engelmeyer
Maintainer: Torben Engelmeyer
DESCRIPTION | 8 +--
MD5 | 4 -
R/send_push.R | 122 +++++++++++++++++++++++++++++-----------------------------
3 files changed, 68 insertions(+), 66 deletions(-)
Title: Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Diff between HAC versions 0.2-3 dated 2012-06-20 and 0.2-4 dated 2012-08-06
Description: Package provides the estimation of the structure and the
parameters, simulation methods and structural plots of
high-dimensional Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin
Maintainer: Alexander Ristig
HAC-0.2-3/HAC/ChangeLog.txt |only
HAC-0.2-4/HAC/ChangeLog |only
HAC-0.2-4/HAC/DESCRIPTION | 10 +++++-----
HAC-0.2-4/HAC/MD5 | 12 ++++++------
HAC-0.2-4/HAC/R/copula_functions.r | 4 ++++
HAC-0.2-4/HAC/R/copula_pdf.r | 12 ++++++------
HAC-0.2-4/HAC/R/copula_plot.r | 21 +++------------------
HAC-0.2-4/HAC/R/copula_simulate.r | 2 +-
8 files changed, 25 insertions(+), 36 deletions(-)
Title: Joint Optimization Plot
Diff between JOP versions 2.1.1 dated 2011-12-02 and 3.0 dated 2012-08-06
Description: JOP is a tool for simultaneous optimization of multiple
responses and visualization of the results. The visualization
is done by the joint optimization plot introduced by Kuhnt and
Erbruegge (2004).
Author: Sonja Kuhnt and Nikolaus Rudak
Maintainer: Nikolaus Rudak
JOP-2.1.1/JOP/R/JOPexample.R |only
JOP-2.1.1/JOP/R/JOPexampledata.R |only
JOP-2.1.1/JOP/R/oplot.R |only
JOP-2.1.1/JOP/man/JOP-package.Rd |only
JOP-3.0/JOP/DESCRIPTION | 12
JOP-3.0/JOP/MD5 | 21
JOP-3.0/JOP/NAMESPACE | 5
JOP-3.0/JOP/R/JOP.R | 1377 ++++++++++++++++-----------------------
JOP-3.0/JOP/R/locate.R | 494 ++++---------
JOP-3.0/JOP/R/plot.JOP.R |only
JOP-3.0/JOP/data |only
JOP-3.0/JOP/man/JOP.Rd | 235 +-----
JOP-3.0/JOP/man/datax.rd |only
JOP-3.0/JOP/man/datay.rd |only
JOP-3.0/JOP/man/locate.rd |only
JOP-3.0/JOP/man/plot.JOP.rd |only
16 files changed, 843 insertions(+), 1301 deletions(-)
Title: Statistical Modeling
Diff between statmod versions 1.4.14 dated 2011-11-21 and 1.4.15 dated 2012-08-06
Description: Various statistical modeling functions including growth
curve comparisons, limiting dilution analysis, mixed linear
models, heteroscedastic regression, Tweedie family generalized
linear models, the inverse-Gaussian distribution and Gauss
quadrature.
Author: Gordon Smyth with contributions from Yifang Hu, Peter Dunn and
Belinda Phipson.
Maintainer: Gordon Smyth
DESCRIPTION | 17 ++--
MD5 | 22 ++---
R/gaussquad.R | 4 -
R/glmgam.R | 6 -
R/glmnb.R | 163 +++++++++++++++++++++++++++---------------
R/limdil.R | 6 -
R/mixedmodel.R | 2
R/sagetest.R | 4 -
inst/doc/changelog.txt | 7 +
man/gauss.quad.Rd | 2
man/glmgam.Rd | 7 +
tests/statmod-Tests.Rout.save | 42 ++++++----
12 files changed, 178 insertions(+), 104 deletions(-)
Title: Complete Environment for Bayesian Inference
Diff between LaplacesDemon versions 12.07.02 dated 2012-07-02 and 12.08.06 dated 2012-08-06
Description: Laplace's Demon is a complete environment for Bayesian
inference.
Author: Byron Hall
Maintainer: Byron Hall
CHANGELOG | 39
DESCRIPTION | 15
MD5 | 205 ++-
NAMESPACE | 39
R/BayesFactor.R | 10
R/BayesianBootstrap.R |only
R/CSF.R | 2
R/Consort.R | 67 +
R/GIV.R | 61 -
R/Importance.R | 25
R/Juxtapose.R | 13
R/LaplaceApproximation.R | 5
R/LaplacesDemon.R | 492 +++++++++
R/LaplacesDemon.RAM.R | 7
R/Levene.Test.R | 5
R/Math.R | 19
R/Matrices.R | 29
R/Mode.R | 4
R/OnLoad.R | 2
R/PMC.R |only
R/PMC.RAM.R |only
R/PosteriorChecks.R | 56 -
R/SIR.R | 20
R/Validate.R |only
R/as.covar.R |only
R/as.initial.values.R | 15
R/as.parm.names.R | 3
R/as.ppc.R |only
R/burnin.R | 3
R/caterpillar.plot.R | 46
R/distributions.R | 657 ++++++++++--
R/interval.R | 48
R/is.class.R | 18
R/is.constant.R |only
R/is.proper.R | 4
R/is.stationary.R | 1
R/p.interval.R | 2
R/plot.demonoid.R | 36
R/plot.demonoid.hpc.R | 6
R/plot.demonoid.ppc.R | 167 +--
R/plot.importance.R | 22
R/plot.laplace.ppc.R | 179 +--
R/plot.pmc.R |only
R/plot.pmc.ppc.R |only
R/plotMatrix.R |only
R/predict.demonoid.R | 9
R/predict.laplace.R | 15
R/predict.pmc.R |only
R/print.pmc.R |only
R/summary.demonoid.ppc.R | 49
R/summary.laplace.ppc.R | 60 -
R/summary.pmc.ppc.R |only
inst/doc/BayesianInference.Stex | 38
inst/doc/BayesianInference.pdf |binary
inst/doc/Examples.Stex | 1036 +++++++++++++-------
inst/doc/Examples.pdf |binary
inst/doc/LaplacesDemonTutorial.Stex | 146 ++
inst/doc/LaplacesDemonTutorial.pdf |binary
inst/doc/References.bib | 111 +-
man/BayesFactor.Rd | 78 -
man/BayesianBootstrap.Rd |only
man/GIV.Rd | 83 +
man/Importance.Rd | 81 +
man/Juxtapose.Rd | 11
man/LML.Rd | 2
man/LPL.interval.Rd | 19
man/LaplaceApproximation.Rd | 54 -
man/LaplacesDemon-package.Rd | 25
man/LaplacesDemon.RAM.Rd | 6
man/LaplacesDemon.Rd | 153 ++
man/Levene.Test.Rd | 7
man/MCSE.Rd | 16
man/Math.Rd | 11
man/Matrices.Rd | 17
man/Model.Spec.Time.Rd | 69 -
man/PMC.RAM.Rd |only
man/PMC.Rd |only
man/PosteriorChecks.Rd | 32
man/Thin.Rd | 18
man/Validate.Rd |only
man/as.covar.Rd |only
man/as.initial.values.Rd | 32
man/as.ppc.Rd |only
man/caterpillar.plot.Rd | 31
man/dist.Categorical.Rd | 3
man/dist.Dirichlet.Rd | 3
man/dist.Inverse.Beta.Rd |only
man/dist.Inverse.Wishart.Cholesky.Rd |only
man/dist.Inverse.Wishart.Rd | 12
man/dist.Multivariate.Cauchy.Cholesky.Rd |only
man/dist.Multivariate.Cauchy.Precision.Cholesky.Rd |only
man/dist.Multivariate.Laplace.Cholesky.Rd |only
man/dist.Multivariate.Normal.Cholesky.Rd |only
man/dist.Multivariate.Normal.Precision.Cholesky.Rd |only
man/dist.Multivariate.Normal.Precision.Rd | 18
man/dist.Multivariate.Normal.Rd | 16
man/dist.Multivariate.Power.Exponential.Cholesky.Rd |only
man/dist.Multivariate.Power.Exponential.Rd | 25
man/dist.Multivariate.t.Cholesky.Rd |only
man/dist.Multivariate.t.Precision.Cholesky.Rd |only
man/dist.Multivariate.t.Rd | 37
man/dist.Student.t.Rd | 3
man/dist.Wishart.Cholesky.Rd |only
man/dist.Wishart.Rd | 12
man/interval.Rd | 17
man/is.class.Rd | 22
man/is.constant.Rd |only
man/is.proper.Rd | 21
man/plot.demonoid.Rd | 21
man/plot.demonoid.ppc.Rd | 28
man/plot.importance.Rd | 44
man/plot.laplace.ppc.Rd | 30
man/plot.pmc.Rd |only
man/plot.pmc.ppc.Rd |only
man/plotMatrix.Rd |only
man/predict.demonoid.Rd | 11
man/predict.laplace.Rd | 2
man/predict.pmc.Rd |only
man/print.pmc.Rd |only
man/summary.demonoid.ppc.Rd | 238 ++--
man/summary.laplace.ppc.Rd | 266 ++---
man/summary.pmc.ppc.Rd |only
122 files changed, 3695 insertions(+), 1665 deletions(-)
Title: A package for graphical modelling in R
Diff between gRbase versions 1.6-1 dated 2012-08-04 and 1.6-2 dated 2012-08-06
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
MD5 | 18 +++++++++---------
inst/doc/gRbase-arrayops1.Rnw | 4 ++--
inst/doc/gRbase-arrayops1.pdf |binary
inst/doc/gRbase-arrayops2.pdf |binary
inst/doc/gRbase-graphs.pdf |binary
inst/doc/gRbase-zzz.pdf |binary
src/Makevars | 2 +-
src/Makevars.win | 1 -
10 files changed, 21 insertions(+), 16 deletions(-)
Title: Forecasting mortality, fertility, migration and population data
Diff between demography versions 1.12 dated 2012-04-24 and 1.13 dated 2012-08-06
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie
Tickle, John Maindonald, Simon Wood and R Core Team.
Maintainer: Rob J Hyndman
ChangeLog | 8 +
DESCRIPTION | 10 -
MD5 | 44 +++---
R/coherent.R | 12 +
R/fdm.R | 4
R/fertility.R | 2
R/hmd.R | 1
R/lca.R | 14 +
R/lifetable.R | 4
R/monotonic.R | 19 ++
R/netmigration.R | 328 +++++++++++++++++++++++----------------------
R/simulate.R | 5
man/coherentfdm.Rd | 6
man/demography-package.Rd | 2
man/forecast.fdm.Rd | 3
man/forecast.fdmpr.Rd | 12 -
man/hmd.Rd | 8 -
man/life.expectancy.Rd | 3
man/migration.Rd | 3
man/monotonic.Rd | 11 -
man/pop.sim.Rd | 7
man/read.demogdata.Rd | 3
man/simulate.fmforecast.Rd | 3
23 files changed, 279 insertions(+), 233 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-03-07 0.3
2009-03-27 0.2
2009-03-20 0.1
Title: Interface to Mendeley API methods
Diff between RMendeley versions 0.1-1 dated 2012-01-18 and 0.1-2 dated 2012-08-06
Description: A programmatic interface to the Web Service methods
provided by the Mendeley open science project.
Author: Carl Boettiger, Duncan Temple Lang
Maintainer: Carl Boettiger
RMendeley-0.1-1/RMendeley/README |only
RMendeley-0.1-1/RMendeley/demo/erdos.R |only
RMendeley-0.1-2/RMendeley/DESCRIPTION | 6 +++---
RMendeley-0.1-2/RMendeley/MD5 | 14 +++++++-------
RMendeley-0.1-2/RMendeley/NEWS |only
RMendeley-0.1-2/RMendeley/R/papers.R | 10 +++++-----
RMendeley-0.1-2/RMendeley/R/search.R | 8 +++++++-
RMendeley-0.1-2/RMendeley/README.md |only
RMendeley-0.1-2/RMendeley/demo/00Index | 1 -
RMendeley-0.1-2/RMendeley/man/msearch.Rd | 3 +++
10 files changed, 25 insertions(+), 17 deletions(-)